Wall clock time and date at job start Mon Mar 30 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86791 * 119.99779 * 2 1 4 4 H 1.48502 * 109.47491 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47279 * 299.99799 * 3 2 1 6 6 H 1.48500 * 109.47616 * 59.99752 * 3 2 1 7 7 C 1.37873 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00649 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47556 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47234 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47002 * 55.00002 * 12 11 10 14 14 C 1.50698 * 109.47184 * 295.00598 * 12 11 10 15 15 O 1.20825 * 119.99963 * 359.97438 * 14 12 11 16 16 O 1.34225 * 119.99990 * 179.97438 * 14 12 11 17 17 C 1.50697 * 109.47239 * 174.99933 * 12 11 10 18 18 C 1.38221 * 120.00708 * 60.00346 * 17 12 11 19 19 C 1.38226 * 120.01934 * 179.97438 * 18 17 12 20 20 C 1.38262 * 120.05318 * 0.02562 * 19 18 17 21 21 C 1.38168 * 120.02958 * 359.97438 * 20 19 18 22 22 C 1.38430 * 120.01462 * 239.72585 * 17 12 11 23 23 F 1.35102 * 120.02768 * 359.97438 * 22 17 12 24 24 H 0.96995 * 119.99834 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46666 * 60.00233 * 9 7 2 26 26 H 1.08998 * 109.46919 * 300.00326 * 9 7 2 27 27 H 1.09006 * 109.46758 * 59.99808 * 10 9 7 28 28 H 1.09003 * 109.47204 * 300.00862 * 10 9 7 29 29 H 1.09007 * 109.46945 * 60.00508 * 11 10 9 30 30 H 1.08995 * 109.47339 * 299.99806 * 11 10 9 31 31 H 0.96708 * 116.99703 * 179.97438 * 16 14 12 32 32 H 1.07998 * 119.99389 * 359.95197 * 18 17 12 33 33 H 1.08009 * 119.96871 * 179.97438 * 19 18 17 34 34 H 1.08009 * 119.98605 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.01998 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4804 -4.9871 0.0033 12 6 2.4747 -6.1500 0.0037 13 1 3.1594 -6.0423 0.8449 14 6 3.2566 -6.1428 -1.2845 15 8 3.0406 -5.2949 -2.1177 16 8 4.1932 -7.0784 -1.5063 17 6 1.7254 -7.4515 0.1293 18 6 0.7946 -7.8085 -0.8281 19 6 0.1076 -9.0024 -0.7134 20 6 0.3501 -9.8406 0.3591 21 6 1.2801 -9.4858 1.3174 22 6 1.9732 -8.2925 1.2006 23 9 2.8872 -7.9475 2.1337 24 1 -0.4849 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 2.8727 -3.6039 0.8910 28 1 2.8714 -3.6047 -0.8890 29 1 0.8528 -5.0455 -0.8861 30 1 0.8548 -5.0442 0.8940 31 1 4.6684 -7.0331 -2.3474 32 1 0.6038 -7.1542 -1.6660 33 1 -0.6199 -9.2804 -1.4619 34 1 -0.1877 -10.7730 0.4479 35 1 1.4691 -10.1404 2.1553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709499398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:34 Heat of formation + Delta-G solvation = -133.723210 kcal Electronic energy + Delta-G solvation = -19723.553791 eV Core-core repulsion = 16407.183949 eV Total energy + Delta-G solvation = -3316.369842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.00794 -40.54820 -38.98745 -36.33120 -35.08777 -33.25920 -31.42796 -30.70077 -28.66945 -25.93996 -23.25631 -23.22536 -22.44112 -20.36739 -19.91237 -18.03265 -17.77310 -16.96126 -16.44123 -16.18212 -15.80315 -15.59507 -15.18050 -14.41918 -14.30162 -14.00865 -13.42043 -13.29936 -13.17325 -12.55226 -12.39933 -12.13152 -11.81865 -11.62442 -11.43049 -11.15759 -11.14302 -10.82609 -10.53135 -10.43521 -10.27513 -9.47172 -9.35653 -9.09725 -8.96418 -8.74990 -8.26927 -5.92695 -3.93935 0.93995 1.01439 2.31946 3.07476 3.35757 3.42722 3.44479 3.47791 4.09883 4.38297 4.52216 4.57214 4.74102 4.98064 5.07024 5.11299 5.29470 5.43232 5.52242 5.69098 5.85553 5.86749 5.99369 6.10355 6.16942 6.23176 6.43286 6.53400 6.68854 6.82377 7.00363 7.26686 7.76958 7.93406 8.01875 8.09390 8.52411 9.13223 9.69432 11.18923 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.004246 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.694562 B = 6592.766870 C = 6830.672967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.119 4.119 11 C -0.098 4.098 12 C -0.041 4.041 13 H 0.117 0.883 14 C 0.483 3.517 15 O -0.489 6.489 16 O -0.519 6.519 17 C -0.105 4.105 18 C -0.082 4.082 19 C -0.127 4.127 20 C -0.093 4.093 21 C -0.154 4.154 22 C 0.112 3.888 23 F -0.135 7.135 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.406 0.594 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.668 -22.114 -0.230 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.157 4.157 11 C -0.136 4.136 12 C -0.060 4.060 13 H 0.135 0.865 14 C 0.324 3.676 15 O -0.374 6.374 16 O -0.331 6.331 17 C -0.106 4.106 18 C -0.100 4.100 19 C -0.145 4.145 20 C -0.111 4.111 21 C -0.173 4.173 22 C 0.093 3.907 23 F -0.113 7.113 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.264 0.736 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.285 -21.752 -0.053 21.872 hybrid contribution 0.913 1.057 -0.337 1.436 sum 3.198 -20.696 -0.389 20.945 Atomic orbital electron populations 1.69981 1.06018 1.26320 1.51377 1.25019 0.94839 0.99178 0.95503 0.86560 0.80155 0.83930 0.77504 1.19784 1.21047 1.21071 1.21311 0.93054 0.91155 1.49866 0.92762 1.19052 0.93943 0.91258 0.97067 1.21818 0.99543 0.93317 1.01001 1.21687 0.96472 0.92499 1.02903 1.20155 0.97172 0.94420 0.94297 0.86465 1.23260 0.77676 0.77805 0.88872 1.90775 1.64840 1.36010 1.45801 1.84562 1.50094 1.53555 1.44864 1.19571 0.99694 0.95633 0.95745 1.21028 0.94262 0.96612 0.98113 1.21193 1.00256 0.94363 0.98707 1.21021 0.96837 0.99695 0.93518 1.21117 0.98537 0.96108 1.01508 1.17502 0.90535 0.94684 0.88027 1.91501 1.64187 1.92113 1.63497 0.93174 0.96523 0.96785 0.93743 0.91609 0.91036 0.90754 0.73591 0.84818 0.85143 0.85013 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 8 H 0.05 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 10 C -0.12 -2.60 4.89 -26.74 -0.13 -2.73 16 11 C -0.10 -1.72 4.07 -26.73 -0.11 -1.83 16 12 C -0.04 -0.61 2.46 -92.92 -0.23 -0.84 16 13 H 0.12 1.70 7.13 -51.93 -0.37 1.33 16 14 C 0.48 7.28 6.98 36.00 0.25 7.53 16 15 O -0.49 -8.97 14.73 -18.75 -0.28 -9.24 16 16 O -0.52 -6.17 13.34 -39.24 -0.52 -6.70 16 17 C -0.11 -1.37 4.72 -104.56 -0.49 -1.86 16 18 C -0.08 -0.95 8.87 -39.59 -0.35 -1.30 16 19 C -0.13 -1.17 10.04 -39.58 -0.40 -1.57 16 20 C -0.09 -0.78 10.04 -39.60 -0.40 -1.18 16 21 C -0.15 -1.50 10.03 -39.51 -0.40 -1.90 16 22 C 0.11 1.37 7.25 -39.42 -0.29 1.09 16 23 F -0.13 -1.78 16.19 2.25 0.04 -1.74 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.51 5.96 -51.93 -0.31 1.20 16 29 H 0.07 1.27 7.39 -51.93 -0.38 0.89 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.41 3.04 9.10 45.56 0.41 3.45 16 32 H 0.13 1.54 7.64 -52.49 -0.40 1.14 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -34.31 307.30 -7.05 -41.36 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.55 Total: -0.51 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -3.09 Total: -18.13 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.74 Total: -27.02 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.80 Total: -15.94 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.31 -7.05 -41.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709499398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.359 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds