Wall clock time and date at job start Mon Mar 30 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86791 * 119.99779 * 2 1 4 4 H 1.48502 * 109.47491 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47279 * 299.99799 * 3 2 1 6 6 H 1.48500 * 109.47616 * 59.99752 * 3 2 1 7 7 C 1.37873 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00649 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47556 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47234 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47002 * 55.00002 * 12 11 10 14 14 C 1.50698 * 109.47184 * 295.00598 * 12 11 10 15 15 O 1.20825 * 119.99963 * 359.97438 * 14 12 11 16 16 O 1.34225 * 119.99990 * 179.97438 * 14 12 11 17 17 C 1.50697 * 109.47239 * 174.99933 * 12 11 10 18 18 C 1.38221 * 120.00708 * 60.00346 * 17 12 11 19 19 C 1.38226 * 120.01934 * 179.97438 * 18 17 12 20 20 C 1.38262 * 120.05318 * 0.02562 * 19 18 17 21 21 C 1.38168 * 120.02958 * 359.97438 * 20 19 18 22 22 C 1.38430 * 120.01462 * 239.72585 * 17 12 11 23 23 F 1.35102 * 120.02768 * 359.97438 * 22 17 12 24 24 H 0.96995 * 119.99834 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46666 * 60.00233 * 9 7 2 26 26 H 1.08998 * 109.46919 * 300.00326 * 9 7 2 27 27 H 1.09006 * 109.46758 * 59.99808 * 10 9 7 28 28 H 1.09003 * 109.47204 * 300.00862 * 10 9 7 29 29 H 1.09007 * 109.46945 * 60.00508 * 11 10 9 30 30 H 1.08995 * 109.47339 * 299.99806 * 11 10 9 31 31 H 0.96708 * 116.99703 * 179.97438 * 16 14 12 32 32 H 1.07998 * 119.99389 * 359.95197 * 18 17 12 33 33 H 1.08009 * 119.96871 * 179.97438 * 19 18 17 34 34 H 1.08009 * 119.98605 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.01998 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4804 -4.9871 0.0033 12 6 2.4747 -6.1500 0.0037 13 1 3.1594 -6.0423 0.8449 14 6 3.2566 -6.1428 -1.2845 15 8 3.0406 -5.2949 -2.1177 16 8 4.1932 -7.0784 -1.5063 17 6 1.7254 -7.4515 0.1293 18 6 0.7946 -7.8085 -0.8281 19 6 0.1076 -9.0024 -0.7134 20 6 0.3501 -9.8406 0.3591 21 6 1.2801 -9.4858 1.3174 22 6 1.9732 -8.2925 1.2006 23 9 2.8872 -7.9475 2.1337 24 1 -0.4849 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8919 27 1 2.8727 -3.6039 0.8910 28 1 2.8714 -3.6047 -0.8890 29 1 0.8528 -5.0455 -0.8861 30 1 0.8548 -5.0442 0.8940 31 1 4.6684 -7.0331 -2.3474 32 1 0.6038 -7.1542 -1.6660 33 1 -0.6199 -9.2804 -1.4619 34 1 -0.1877 -10.7730 0.4479 35 1 1.4691 -10.1404 2.1553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709499398.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:34 Heat of formation + Delta-G solvation = -154.627252 kcal Electronic energy + Delta-G solvation = -19724.460258 eV Core-core repulsion = 16407.183949 eV Total energy + Delta-G solvation = -3317.276309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.93442 -41.71134 -39.85985 -37.54043 -36.54040 -35.11659 -33.10834 -31.49949 -30.07345 -27.63670 -24.99639 -24.10123 -23.45312 -22.04365 -21.22604 -19.16681 -18.65718 -18.46617 -18.04897 -17.40142 -16.84592 -16.56112 -16.48477 -16.20197 -15.48827 -15.10657 -14.72783 -14.49837 -14.24765 -14.13175 -13.69896 -13.61333 -13.15656 -13.02329 -12.73364 -12.67819 -12.56140 -12.41891 -12.13122 -12.06587 -11.79999 -11.36608 -11.21717 -11.06964 -10.55502 -9.95194 -9.64602 -8.20955 -6.31995 0.11714 0.22585 1.12999 1.37657 1.38616 1.52154 2.03183 2.40020 2.62867 3.11596 3.26565 3.37536 3.64830 3.84710 3.96004 4.15519 4.30406 4.35734 4.38833 4.52397 4.60422 4.79334 4.87531 5.03003 5.07285 5.18725 5.19611 5.24655 5.35733 5.45450 5.47463 5.59890 5.76714 5.86804 5.92265 6.25373 6.84099 6.96368 7.36778 8.91328 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.004246 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.694562 B = 6592.766870 C = 6830.672967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.107 4.107 11 C -0.087 4.087 12 C -0.036 4.036 13 H 0.120 0.880 14 C 0.491 3.509 15 O -0.529 6.529 16 O -0.508 6.508 17 C -0.123 4.123 18 C -0.098 4.098 19 C -0.122 4.122 20 C -0.081 4.081 21 C -0.151 4.151 22 C 0.091 3.909 23 F -0.146 7.146 24 H 0.264 0.736 25 H -0.012 1.012 26 H -0.005 1.005 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.426 0.574 32 H 0.125 0.875 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -23.769 0.046 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.144 4.144 11 C -0.125 4.125 12 C -0.055 4.055 13 H 0.138 0.862 14 C 0.334 3.666 15 O -0.418 6.418 16 O -0.321 6.321 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.140 4.140 20 C -0.099 4.099 21 C -0.169 4.169 22 C 0.072 3.928 23 F -0.124 7.124 24 H 0.073 0.927 25 H 0.006 0.994 26 H 0.013 0.987 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.288 0.712 32 H 0.143 0.857 33 H 0.175 0.825 34 H 0.188 0.812 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.649 -23.442 0.221 23.592 hybrid contribution 0.769 1.463 -0.445 1.712 sum 3.418 -21.979 -0.224 22.244 Atomic orbital electron populations 1.70105 1.07744 1.27720 1.51755 1.25989 0.95834 1.03349 0.94652 0.85386 0.78935 0.78666 0.77984 1.18856 1.20212 1.19927 1.21722 0.93379 0.92629 1.50503 0.92692 1.18953 0.94323 0.92993 0.94664 1.21601 0.98471 0.93719 1.00638 1.21451 0.96684 0.91610 1.02721 1.19931 0.96718 0.94554 0.94333 0.86250 1.23250 0.77584 0.77358 0.88393 1.90765 1.66193 1.37718 1.47142 1.84506 1.49227 1.52077 1.46311 1.19427 1.00799 0.95067 0.97130 1.21106 0.94830 0.97823 0.97834 1.21545 0.99784 0.93193 0.99477 1.21482 0.95746 1.00538 0.92100 1.21472 0.97860 0.95180 1.02434 1.17768 0.91329 0.95834 0.87889 1.91468 1.64749 1.92368 1.63859 0.92707 0.99358 0.98689 0.93189 0.92704 0.91775 0.90389 0.71196 0.85691 0.82499 0.81240 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.83 13.29 21.45 0.28 -58.55 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -33.05 9.11 25.60 0.23 -32.82 16 8 H 0.05 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.57 4.97 29.85 0.15 1.72 16 10 C -0.11 -4.84 4.89 30.59 0.15 -4.69 16 11 C -0.09 -3.18 4.07 30.59 0.12 -3.05 16 12 C -0.04 -1.09 2.46 -12.29 -0.03 -1.12 16 13 H 0.12 3.49 7.13 -2.39 -0.02 3.47 16 14 C 0.49 14.91 6.98 71.24 0.50 15.41 16 15 O -0.53 -19.95 14.73 21.97 0.32 -19.63 16 16 O -0.51 -11.60 13.34 -51.37 -0.69 -12.28 16 17 C -0.12 -3.13 4.72 -19.82 -0.09 -3.22 16 18 C -0.10 -2.17 8.87 22.26 0.20 -1.98 16 19 C -0.12 -1.91 10.04 22.27 0.22 -1.69 16 20 C -0.08 -1.05 10.04 22.26 0.22 -0.83 16 21 C -0.15 -2.51 10.03 22.31 0.22 -2.28 16 22 C 0.09 2.12 7.25 22.38 0.16 2.28 16 23 F -0.15 -3.76 16.19 44.97 0.73 -3.03 16 24 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.05 2.61 5.96 -2.39 -0.01 2.59 16 29 H 0.06 2.40 7.39 -2.38 -0.02 2.39 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.43 5.82 9.10 -74.05 -0.67 5.15 16 32 H 0.13 2.92 7.64 -2.91 -0.02 2.90 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 34 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -75.67 307.30 5.63 -70.03 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.43 Total: 7.12 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 2.52 Total: -31.86 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.28 Total: -58.55 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.36 Total: -31.91 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.73 Total: -3.03 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -75.67 5.63 -70.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709499398.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.594 kcal (2) G-P(sol) polarization free energy of solvation -75.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds