Wall clock time and date at job start Mon Mar 30 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33391 * 125.20594 * 2 1 4 4 C 1.38426 * 114.92091 * 179.79225 * 3 2 1 5 5 C 1.50696 * 122.54080 * 180.27245 * 4 3 2 6 6 C 1.33395 * 114.91759 * 0.43087 * 4 3 2 7 7 C 1.50704 * 125.19644 * 179.85915 * 6 4 3 8 8 H 1.09002 * 110.27890 * 342.62402 * 7 6 4 9 9 C 1.54950 * 110.30810 * 104.71988 * 7 6 4 10 10 C 1.55306 * 100.94152 * 155.35503 * 9 7 6 11 11 C 1.54383 * 102.25441 * 325.86727 * 10 9 7 12 12 C 1.53000 * 109.82967 * 261.75354 * 11 10 9 13 13 C 1.50694 * 109.83245 * 140.86881 * 11 10 9 14 14 H 1.08002 * 120.00179 * 0.18326 * 13 11 10 15 15 C 1.37879 * 120.00472 * 180.18643 * 13 11 10 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 O 1.43238 * 107.66659 * 21.31058 * 11 10 9 22 22 S 1.75882 * 109.59617 * 359.59477 * 6 4 3 23 23 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47136 * 300.00261 * 1 2 3 25 25 H 1.09000 * 109.47149 * 60.00135 * 1 2 3 26 26 H 1.07998 * 122.53567 * 0.02562 * 3 2 1 27 27 H 1.09006 * 109.46775 * 270.17286 * 5 4 3 28 28 H 1.09001 * 109.46910 * 30.16827 * 5 4 3 29 29 H 1.08995 * 109.47493 * 150.16997 * 5 4 3 30 30 H 1.08999 * 111.12302 * 37.43925 * 9 7 6 31 31 H 1.08995 * 111.12129 * 273.27364 * 9 7 6 32 32 H 1.08994 * 110.84683 * 207.67411 * 10 9 7 33 33 H 1.08998 * 111.01915 * 84.13323 * 10 9 7 34 34 H 1.09000 * 109.47026 * 299.81129 * 12 11 10 35 35 H 1.08996 * 109.47205 * 59.81161 * 12 11 10 36 36 H 1.09003 * 109.46937 * 179.81873 * 12 11 10 37 37 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0046 5 6 4.6624 1.9480 0.0113 6 6 3.9751 -0.4479 -0.0008 7 6 5.3861 -0.9772 -0.0006 8 1 6.0831 -0.1949 -0.3010 9 6 5.7572 -1.5184 1.4031 10 6 6.8729 -2.5363 1.0410 11 6 6.3950 -3.0743 -0.3248 12 6 5.6732 -4.4096 -0.1329 13 6 7.5755 -3.2588 -1.2431 14 1 8.5709 -3.0226 -0.8971 15 6 7.3849 -3.7292 -2.5251 16 7 6.1728 -4.0173 -2.9462 17 14 8.8482 -3.9573 -3.6636 18 1 9.0834 -2.7041 -4.4246 19 1 10.0542 -4.2824 -2.8604 20 1 8.5703 -5.0668 -4.6107 21 8 5.4933 -2.1100 -0.8805 22 16 2.5209 -1.4373 -0.0006 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8670 2.0894 0.0004 27 1 4.9110 2.2192 -1.0148 28 1 4.2558 2.8171 0.5285 29 1 5.5613 1.6072 0.5250 30 1 4.9072 -2.0166 1.8693 31 1 6.1428 -0.7234 2.0412 32 1 6.9210 -3.3376 1.7783 33 1 7.8388 -2.0403 0.9461 34 1 6.3563 -5.1307 0.3160 35 1 4.8135 -4.2671 0.5219 36 1 5.3356 -4.7824 -1.1000 37 1 6.0387 -4.3479 -3.8483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719479488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:01 Heat of formation + Delta-G solvation = -25.417681 kcal Electronic energy + Delta-G solvation = -18537.528000 eV Core-core repulsion = 15792.067815 eV Total energy + Delta-G solvation = -2745.460186 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.81605 -37.62624 -33.32507 -32.30989 -31.02547 -29.85943 -28.06642 -26.80865 -25.23618 -23.44856 -21.40522 -20.84943 -19.39004 -17.98146 -16.65499 -16.44075 -15.14435 -14.78371 -14.38756 -14.00104 -13.71822 -13.24091 -13.05025 -12.96680 -12.72067 -12.29760 -12.14230 -11.88797 -11.62100 -11.42686 -11.23032 -11.05055 -10.93236 -10.77229 -10.59905 -10.47261 -10.35284 -10.10776 -9.94649 -9.51982 -9.09953 -8.46598 -8.11451 -7.85170 -7.74525 -5.92142 -4.09227 1.40434 2.08351 2.54631 3.02282 3.32084 3.38928 3.40978 4.44248 4.92958 5.03365 5.30882 5.38363 5.46204 5.50231 5.57588 5.58760 5.68842 5.77854 5.85547 5.90483 5.95747 6.16835 6.22431 6.29113 6.35076 6.49760 6.53919 6.67470 6.82075 6.84042 6.94356 6.96468 7.12914 7.41317 7.80911 8.11637 8.38276 8.62587 9.05182 9.62148 11.09400 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.005993 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.220720 B = 4670.666630 C = 4789.986834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.210 4.210 3 C -0.134 4.134 4 C -0.123 4.123 5 C -0.089 4.089 6 C -0.151 4.151 7 C 0.141 3.859 8 H 0.073 0.927 9 C -0.146 4.146 10 C -0.140 4.140 11 C 0.227 3.773 12 C -0.138 4.138 13 C -0.535 4.535 14 H 0.058 0.942 15 C 0.082 3.918 16 N -0.858 5.858 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.286 1.286 21 O -0.341 6.341 22 S 0.139 5.861 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.011 0.989 36 H 0.090 0.910 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 8.135 7.357 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.328 4.328 3 C -0.165 4.165 4 C -0.135 4.135 5 C -0.148 4.148 6 C -0.269 4.269 7 C 0.080 3.920 8 H 0.091 0.909 9 C -0.185 4.185 10 C -0.178 4.178 11 C 0.190 3.810 12 C -0.196 4.196 13 C -0.573 4.573 14 H 0.077 0.923 15 C -0.124 4.124 16 N -0.494 5.494 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.199 1.199 20 H -0.212 1.212 21 O -0.261 6.261 22 S 0.406 5.594 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.109 0.891 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.024 6.425 7.004 12.439 hybrid contribution 1.168 1.460 -0.552 1.950 sum -6.856 7.886 6.452 12.280 Atomic orbital electron populations 1.20221 0.88465 1.02448 1.02211 1.24523 0.99740 0.97218 1.11298 1.19744 0.92299 0.98734 1.05761 1.18657 0.94583 0.93964 1.06284 1.20450 0.96901 0.95442 1.02049 1.24668 0.98948 0.95652 1.07637 1.21144 0.87960 0.92386 0.90502 0.90944 1.23262 0.99432 0.99036 0.96731 1.23236 0.97668 0.97618 0.99308 1.19678 0.87617 0.85821 0.87909 1.21974 0.97230 0.98086 1.02318 1.21262 0.92188 1.45524 0.98300 0.92348 1.25002 0.95370 0.94092 0.97930 1.69958 1.20043 1.42198 1.17242 0.86697 0.83168 0.77794 0.80876 1.20619 1.19896 1.21183 1.88876 1.66775 1.27312 1.43134 1.84466 0.95534 1.07732 1.71623 0.91761 0.91221 0.91145 0.85267 0.91549 0.92137 0.91653 0.91497 0.91595 0.91989 0.91560 0.94525 0.97016 0.89111 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.38 36.01 0.37 -0.47 16 2 C -0.21 -3.16 6.51 -36.00 -0.23 -3.40 16 3 C -0.13 -2.01 9.85 -41.21 -0.41 -2.42 16 4 C -0.12 -2.04 5.80 -106.25 -0.62 -2.66 16 5 C -0.09 -1.22 9.60 36.00 0.35 -0.88 16 6 C -0.15 -2.88 5.50 -36.00 -0.20 -3.07 16 7 C 0.14 2.93 3.51 -26.85 -0.09 2.84 16 8 H 0.07 1.50 6.81 -51.93 -0.35 1.14 16 9 C -0.15 -2.72 6.56 -24.48 -0.16 -2.88 16 10 C -0.14 -2.92 6.08 -24.78 -0.15 -3.07 16 11 C 0.23 5.69 0.82 -91.05 -0.07 5.61 16 12 C -0.14 -3.41 8.50 37.16 0.32 -3.09 16 13 C -0.54 -14.73 8.22 -34.44 -0.28 -15.01 16 14 H 0.06 1.58 7.52 -52.49 -0.39 1.18 16 15 C 0.08 2.27 5.26 -17.82 -0.09 2.18 16 16 N -0.86 -24.86 10.92 55.43 0.61 -24.26 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 O -0.34 -8.79 9.72 -35.23 -0.34 -9.14 16 22 S 0.14 2.51 23.16 -107.50 -2.49 0.02 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.06 0.89 7.00 -51.93 -0.36 0.52 16 30 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.19 7.82 -51.93 -0.41 0.79 16 33 H 0.07 1.35 7.65 -51.93 -0.40 0.96 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 2.49 6.03 -51.93 -0.31 2.17 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -30.11 313.60 -9.38 -39.50 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.58 Total: -0.82 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -1.28 Total: -26.31 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.61 Total: -24.26 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.34 Total: -9.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.49 Total: 0.02 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.11 -9.38 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719479488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.080 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds