Wall clock time and date at job start Mon Mar 30 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33391 * 125.20594 * 2 1 4 4 C 1.38426 * 114.92091 * 179.79225 * 3 2 1 5 5 C 1.50696 * 122.54080 * 180.27245 * 4 3 2 6 6 C 1.33395 * 114.91759 * 0.43087 * 4 3 2 7 7 C 1.50704 * 125.19644 * 179.85915 * 6 4 3 8 8 H 1.09002 * 110.27890 * 342.62402 * 7 6 4 9 9 C 1.54950 * 110.30810 * 104.71988 * 7 6 4 10 10 C 1.55306 * 100.94152 * 155.35503 * 9 7 6 11 11 C 1.54383 * 102.25441 * 325.86727 * 10 9 7 12 12 C 1.53000 * 109.82967 * 261.75354 * 11 10 9 13 13 C 1.50694 * 109.83245 * 140.86881 * 11 10 9 14 14 H 1.08002 * 120.00179 * 0.18326 * 13 11 10 15 15 C 1.37879 * 120.00472 * 180.18643 * 13 11 10 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47326 * 270.00340 * 17 15 13 19 19 H 1.48506 * 109.46545 * 30.00090 * 17 15 13 20 20 H 1.48498 * 109.47210 * 149.99801 * 17 15 13 21 21 O 1.43238 * 107.66659 * 21.31058 * 11 10 9 22 22 S 1.75882 * 109.59617 * 359.59477 * 6 4 3 23 23 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47136 * 300.00261 * 1 2 3 25 25 H 1.09000 * 109.47149 * 60.00135 * 1 2 3 26 26 H 1.07998 * 122.53567 * 0.02562 * 3 2 1 27 27 H 1.09006 * 109.46775 * 270.17286 * 5 4 3 28 28 H 1.09001 * 109.46910 * 30.16827 * 5 4 3 29 29 H 1.08995 * 109.47493 * 150.16997 * 5 4 3 30 30 H 1.08999 * 111.12302 * 37.43925 * 9 7 6 31 31 H 1.08995 * 111.12129 * 273.27364 * 9 7 6 32 32 H 1.08994 * 110.84683 * 207.67411 * 10 9 7 33 33 H 1.08998 * 111.01915 * 84.13323 * 10 9 7 34 34 H 1.09000 * 109.47026 * 299.81129 * 12 11 10 35 35 H 1.08996 * 109.47205 * 59.81161 * 12 11 10 36 36 H 1.09003 * 109.46937 * 179.81873 * 12 11 10 37 37 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0046 5 6 4.6624 1.9480 0.0113 6 6 3.9751 -0.4479 -0.0008 7 6 5.3861 -0.9772 -0.0006 8 1 6.0831 -0.1949 -0.3010 9 6 5.7572 -1.5184 1.4031 10 6 6.8729 -2.5363 1.0410 11 6 6.3950 -3.0743 -0.3248 12 6 5.6732 -4.4096 -0.1329 13 6 7.5755 -3.2588 -1.2431 14 1 8.5709 -3.0226 -0.8971 15 6 7.3849 -3.7292 -2.5251 16 7 6.1728 -4.0173 -2.9462 17 14 8.8482 -3.9573 -3.6636 18 1 9.0834 -2.7041 -4.4246 19 1 10.0542 -4.2824 -2.8604 20 1 8.5703 -5.0668 -4.6107 21 8 5.4933 -2.1100 -0.8805 22 16 2.5209 -1.4373 -0.0006 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8670 2.0894 0.0004 27 1 4.9110 2.2192 -1.0148 28 1 4.2558 2.8171 0.5285 29 1 5.5613 1.6072 0.5250 30 1 4.9072 -2.0166 1.8693 31 1 6.1428 -0.7234 2.0412 32 1 6.9210 -3.3376 1.7783 33 1 7.8388 -2.0403 0.9461 34 1 6.3563 -5.1307 0.3160 35 1 4.8135 -4.2671 0.5219 36 1 5.3356 -4.7824 -1.1000 37 1 6.0387 -4.3479 -3.8483 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719479488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:01 Heat of formation + Delta-G solvation = -41.423288 kcal Electronic energy + Delta-G solvation = -18538.222056 eV Core-core repulsion = 15792.067815 eV Total energy + Delta-G solvation = -2746.154241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41086 -39.00922 -35.12187 -33.72201 -32.79414 -31.53647 -29.13980 -28.27193 -27.30142 -25.01021 -22.70713 -22.26338 -21.26269 -19.28617 -18.45062 -18.02855 -16.81019 -16.46665 -15.94735 -15.45896 -15.07464 -14.77181 -14.47981 -14.03694 -13.92050 -13.80100 -13.61926 -13.56869 -13.12781 -12.89689 -12.82922 -12.64742 -12.45720 -12.34823 -12.31489 -12.15615 -12.00981 -11.72962 -11.45494 -11.26291 -10.95886 -10.56800 -9.84581 -9.26791 -9.09919 -8.00944 -6.25111 0.13496 0.80280 1.26955 1.40764 1.41711 1.51332 1.80779 2.43553 3.11836 3.58873 3.87926 3.91180 3.97622 4.23218 4.39979 4.47429 4.52739 4.64652 4.65525 4.78402 4.79323 4.81726 4.85142 4.91079 4.95609 5.04844 5.08610 5.14750 5.19904 5.27139 5.31470 5.48071 5.61618 5.69036 5.77674 6.10438 6.34266 6.66398 7.11288 7.50950 8.99165 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.005993 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.220720 B = 4670.666630 C = 4789.986834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.189 4.189 3 C -0.144 4.144 4 C -0.111 4.111 5 C -0.091 4.091 6 C -0.189 4.189 7 C 0.136 3.864 8 H 0.067 0.933 9 C -0.131 4.131 10 C -0.136 4.136 11 C 0.213 3.787 12 C -0.130 4.130 13 C -0.553 4.553 14 H 0.056 0.944 15 C 0.032 3.968 16 N -0.889 5.889 17 Si 0.949 3.051 18 H -0.280 1.280 19 H -0.264 1.264 20 H -0.284 1.284 21 O -0.375 6.375 22 S 0.075 5.925 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.165 0.835 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 10.179 8.324 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.307 4.307 3 C -0.174 4.174 4 C -0.124 4.124 5 C -0.150 4.150 6 C -0.306 4.306 7 C 0.076 3.924 8 H 0.085 0.915 9 C -0.169 4.169 10 C -0.174 4.174 11 C 0.175 3.825 12 C -0.188 4.188 13 C -0.590 4.590 14 H 0.074 0.926 15 C -0.170 4.170 16 N -0.526 5.526 17 Si 0.775 3.225 18 H -0.206 1.206 19 H -0.189 1.189 20 H -0.209 1.209 21 O -0.296 6.296 22 S 0.341 5.659 23 H 0.084 0.916 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.182 0.818 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.521 8.477 7.985 14.430 hybrid contribution 1.242 0.915 -0.838 1.755 sum -7.279 9.392 7.148 13.867 Atomic orbital electron populations 1.20394 0.85592 1.03293 1.04184 1.24984 1.01294 0.95218 1.09165 1.20097 0.91511 1.00255 1.05526 1.19135 0.96151 0.93672 1.03412 1.20549 0.96320 0.95579 1.02516 1.24481 0.97929 0.96569 1.11618 1.21227 0.89448 0.90875 0.90839 0.91496 1.23180 0.98542 0.99126 0.96091 1.23136 0.98275 0.98569 0.97385 1.19752 0.87052 0.86107 0.89551 1.21843 0.97758 0.98429 1.00732 1.21668 0.93082 1.45189 0.99084 0.92559 1.25753 0.97748 0.94041 0.99507 1.70124 1.21913 1.43292 1.17319 0.85722 0.80352 0.77525 0.78936 1.20638 1.18874 1.20916 1.88794 1.66777 1.28789 1.45216 1.84606 0.97253 1.10791 1.73241 0.91600 0.88691 0.89403 0.81802 0.91472 0.89053 0.91808 0.91459 0.88505 0.90618 0.91493 0.93895 0.95892 0.92323 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.38 71.24 0.74 -0.73 16 2 C -0.19 -5.28 6.51 24.59 0.16 -5.12 16 3 C -0.14 -3.88 9.85 21.22 0.21 -3.67 16 4 C -0.11 -3.48 5.80 -20.92 -0.12 -3.60 16 5 C -0.09 -2.26 9.60 71.23 0.68 -1.57 16 6 C -0.19 -7.12 5.50 24.59 0.14 -6.99 16 7 C 0.14 5.69 3.51 30.52 0.11 5.80 16 8 H 0.07 2.79 6.81 -2.39 -0.02 2.77 16 9 C -0.13 -4.76 6.56 32.05 0.21 -4.54 16 10 C -0.14 -5.57 6.08 31.86 0.19 -5.38 16 11 C 0.21 10.84 0.82 -11.07 -0.01 10.83 16 12 C -0.13 -6.56 8.50 71.98 0.61 -5.95 16 13 C -0.55 -30.90 8.22 25.60 0.21 -30.69 16 14 H 0.06 3.07 7.52 -2.91 -0.02 3.05 16 15 C 0.03 1.80 5.26 84.66 0.45 2.24 16 16 N -0.89 -53.19 10.92 21.45 0.23 -52.95 16 17 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 O -0.38 -19.86 9.72 -148.98 -1.45 -21.31 16 22 S 0.07 2.72 23.16 -56.49 -1.31 1.41 16 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 27 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.09 1.70 8.13 -2.39 -0.02 1.68 16 29 H 0.06 1.60 7.00 -2.39 -0.02 1.58 16 30 H 0.07 2.42 8.05 -2.39 -0.02 2.40 16 31 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.08 2.84 7.82 -2.39 -0.02 2.82 16 33 H 0.07 2.69 7.65 -2.39 -0.02 2.67 16 34 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.06 3.34 6.03 -2.39 -0.01 3.32 16 37 H 0.26 14.70 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -66.62 313.60 4.13 -62.50 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.05 Total: 13.28 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 3.58 Total: -49.37 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.23 Total: -52.95 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -1.45 Total: -21.31 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.31 Total: 1.41 kcal Total: -66.62 4.13 -62.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719479488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.075 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds