Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46811 * 2 1 4 4 C 1.53002 * 109.47424 * 60.00163 * 3 2 1 5 5 C 1.50700 * 109.47350 * 299.99839 * 3 2 1 6 6 O 1.20819 * 120.00357 * 120.00559 * 5 3 2 7 7 O 1.34231 * 119.99661 * 300.00350 * 5 3 2 8 8 C 1.50707 * 109.46906 * 179.97438 * 3 2 1 9 9 C 1.36580 * 120.11500 * 0.69275 * 8 3 2 10 10 C 1.38918 * 120.22160 * 180.27622 * 9 8 3 11 11 F 1.35099 * 119.77955 * 179.70970 * 10 9 8 12 12 C 1.38960 * 120.44329 * 359.69031 * 10 9 8 13 13 C 1.36551 * 120.21416 * 0.04369 * 12 10 9 14 14 C 1.40746 * 120.11167 * 180.42426 * 8 3 2 15 15 C 1.41321 * 120.21725 * 0.02680 * 14 8 3 16 16 H 1.07998 * 119.99536 * 327.85036 * 15 14 8 17 17 C 1.39923 * 119.99891 * 147.56822 * 15 14 8 18 18 N 1.30847 * 119.99839 * 344.19351 * 17 15 14 19 19 Si 1.86794 * 119.99756 * 164.19430 * 17 15 14 20 20 H 1.48500 * 109.47281 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47018 * 119.99880 * 19 17 15 22 22 H 1.48501 * 109.47096 * 239.99704 * 19 17 15 23 23 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47296 * 300.00365 * 1 2 3 25 25 H 1.09000 * 109.47256 * 60.00187 * 1 2 3 26 26 H 1.08995 * 109.47150 * 240.00117 * 2 1 3 27 27 H 1.09000 * 109.47256 * 119.99813 * 2 1 3 28 28 H 1.09002 * 109.46996 * 178.10386 * 4 3 2 29 29 H 1.08999 * 109.46647 * 298.10248 * 4 3 2 30 30 H 1.08994 * 109.47272 * 58.10272 * 4 3 2 31 31 H 0.96708 * 116.99658 * 179.97438 * 7 5 3 32 32 H 1.08004 * 119.88862 * 359.97438 * 9 8 3 33 33 H 1.07995 * 119.89532 * 180.02562 * 12 10 9 34 34 H 1.08006 * 120.10886 * 179.97438 * 13 12 10 35 35 H 0.97004 * 119.99497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2493 5 6 1.5376 2.1529 -1.2305 6 8 0.8430 3.1353 -1.1197 7 8 1.8619 1.6943 -2.4496 8 6 3.5470 1.4425 0.0006 9 6 4.2323 0.2612 -0.0132 10 6 5.6214 0.2585 -0.0068 11 9 6.2902 -0.9153 -0.0147 12 6 6.3277 1.4552 0.0071 13 6 5.6608 2.6467 0.0156 14 6 4.2531 2.6600 0.0098 15 6 3.5535 3.8879 0.0190 16 1 2.5981 3.9687 -0.4782 17 6 4.0958 4.9972 0.6772 18 7 5.0728 4.8371 1.5327 19 14 3.4250 6.7065 0.3344 20 1 2.3309 6.6176 -0.6656 21 1 2.8993 7.2935 1.5931 22 1 4.5121 7.5674 -0.1971 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.9208 3.1812 1.2663 29 1 0.4405 2.1933 1.2324 30 1 1.8652 1.6308 2.1389 31 1 1.5158 2.1831 -3.2089 32 1 3.6923 -0.6741 -0.0242 33 1 7.4076 1.4428 0.0115 34 1 6.2115 3.5758 0.0269 35 1 5.4485 5.6061 1.9893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725432446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = -132.384484 kcal Electronic energy + Delta-G solvation = -21158.534350 eV Core-core repulsion = 17842.222559 eV Total energy + Delta-G solvation = -3316.311790 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.52664 -40.27490 -37.87039 -35.61554 -35.10729 -33.63926 -30.61221 -29.58718 -28.04150 -25.61760 -24.49332 -23.00011 -21.41835 -20.59037 -18.92439 -17.59936 -17.27678 -16.43877 -15.75505 -15.22282 -14.89582 -14.59533 -14.28315 -14.12585 -13.86355 -13.51196 -12.78331 -12.65721 -12.41321 -12.20472 -11.96649 -11.45994 -11.34431 -11.29351 -11.23627 -11.06381 -10.98248 -10.79041 -10.61445 -10.35905 -10.17849 -9.82029 -9.64610 -9.34436 -9.22514 -7.76086 -7.30022 -6.89683 -4.47922 2.51527 2.64403 2.99922 3.05154 3.06517 3.14361 3.76413 3.89635 4.44647 5.17989 5.25137 5.34063 5.43671 5.68197 5.81865 5.96234 5.96966 5.98593 6.10793 6.21513 6.31866 6.38643 6.49774 6.62863 6.68694 6.87580 6.93618 7.06465 7.13568 7.26502 7.33394 7.51499 7.72427 7.86166 8.04920 8.41823 8.59809 8.69279 8.73242 10.06622 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.010903 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.076358 B = 2567.594037 C = 3925.252178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C 0.026 3.974 4 C -0.138 4.138 5 C 0.505 3.495 6 O -0.520 6.520 7 O -0.514 6.514 8 C -0.172 4.172 9 C -0.101 4.101 10 C -0.045 4.045 11 F -0.173 7.173 12 C -0.124 4.124 13 C -0.134 4.134 14 C 0.117 3.883 15 C -0.468 4.468 16 H 0.099 0.901 17 C 0.080 3.920 18 N -0.789 5.789 19 Si 0.901 3.099 20 H -0.256 1.256 21 H -0.272 1.272 22 H -0.272 1.272 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 -3.773 -2.445 6.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C 0.025 3.975 4 C -0.195 4.195 5 C 0.348 3.652 6 O -0.409 6.409 7 O -0.324 6.324 8 C -0.174 4.174 9 C -0.119 4.119 10 C -0.065 4.065 11 F -0.152 7.152 12 C -0.144 4.144 13 C -0.153 4.153 14 C 0.114 3.886 15 C -0.496 4.496 16 H 0.117 0.883 17 C -0.139 4.139 18 N -0.414 5.414 19 Si 0.725 3.275 20 H -0.179 1.179 21 H -0.197 1.197 22 H -0.197 1.197 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.253 0.747 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.851 -3.628 -1.892 6.347 hybrid contribution -0.154 1.011 -0.541 1.157 sum -5.005 -2.617 -2.433 6.150 Atomic orbital electron populations 1.21908 0.96121 1.01349 1.01994 1.21699 0.95321 0.95046 1.03185 1.18952 0.94121 0.94511 0.89896 1.21916 0.99402 1.04041 0.94157 1.23520 0.75283 0.81997 0.84374 1.90622 1.36990 1.26097 1.87167 1.84614 1.72448 1.58577 1.16741 1.18752 0.90892 0.93072 1.14705 1.20209 0.91889 0.97677 1.02165 1.17263 0.89839 0.80219 1.19143 1.91287 1.81127 1.47052 1.95783 1.20491 0.98400 0.92157 1.03316 1.20822 0.94418 0.95880 1.04186 1.17471 0.91709 0.91630 0.87759 1.19994 1.06345 0.93622 1.29667 0.88334 1.25858 0.93839 1.01222 0.92972 1.69816 1.20722 1.33061 1.17793 0.86342 0.80096 0.81315 0.79767 1.17930 1.19746 1.19704 0.92670 0.91972 0.93390 0.90897 0.90470 0.88385 0.93246 0.92334 0.74707 0.87320 0.88117 0.86304 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.31 37.16 0.35 -1.80 16 2 C -0.12 -1.83 3.59 -26.73 -0.10 -1.93 16 3 C 0.03 0.51 0.48 -156.81 -0.07 0.44 16 4 C -0.14 -2.69 7.12 37.16 0.26 -2.43 16 5 C 0.50 9.98 4.00 36.01 0.14 10.12 16 6 O -0.52 -11.27 15.05 -18.74 -0.28 -11.55 16 7 O -0.51 -8.85 13.24 -39.26 -0.52 -9.37 16 8 C -0.17 -3.84 4.70 -104.27 -0.49 -4.33 16 9 C -0.10 -2.17 8.91 -39.93 -0.36 -2.53 16 10 C -0.04 -1.02 7.32 -39.06 -0.29 -1.31 16 11 F -0.17 -3.80 17.26 2.25 0.04 -3.76 16 12 C -0.12 -2.86 9.96 -39.92 -0.40 -3.26 16 13 C -0.13 -3.27 8.61 -39.23 -0.34 -3.61 16 14 C 0.12 2.88 5.31 -106.82 -0.57 2.31 16 15 C -0.47 -11.58 5.89 -37.78 -0.22 -11.81 16 16 H 0.10 2.47 4.02 -52.49 -0.21 2.26 16 17 C 0.08 1.92 5.12 -17.34 -0.09 1.83 16 18 N -0.79 -19.34 11.38 55.55 0.63 -18.71 16 19 Si 0.90 18.60 29.59 -169.99 -5.03 13.57 16 20 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.84 6.47 -51.93 -0.34 0.50 16 25 H 0.05 0.68 7.22 -51.93 -0.37 0.31 16 26 H 0.07 1.15 7.45 -51.93 -0.39 0.76 16 27 H 0.08 1.17 7.54 -51.93 -0.39 0.78 16 28 H 0.10 2.20 5.23 -51.93 -0.27 1.92 16 29 H 0.05 0.87 6.44 -51.93 -0.33 0.53 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.40 4.92 9.10 45.56 0.41 5.33 16 32 H 0.11 2.07 5.85 -52.48 -0.31 1.76 16 33 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.12 2.97 6.68 -52.48 -0.35 2.62 16 35 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 286.82 15.07 4.32 4.32 Total: -1.00 -27.80 286.82 -5.95 -33.75 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -2.95 Total: 10.05 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.16 Total: -18.30 kcal Atomic # 7 Polarization: -19.34 SS G_CDS: 0.63 Total: -18.71 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.80 Total: -20.92 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.76 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.80 -5.95 -33.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725432446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.636 kcal (2) G-P(sol) polarization free energy of solvation -27.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds