Wall clock time and date at job start Mon Mar 30 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46811 * 2 1 4 4 C 1.53002 * 109.47424 * 60.00163 * 3 2 1 5 5 C 1.50700 * 109.47350 * 299.99839 * 3 2 1 6 6 O 1.20819 * 120.00357 * 120.00559 * 5 3 2 7 7 O 1.34231 * 119.99661 * 300.00350 * 5 3 2 8 8 C 1.50707 * 109.46906 * 179.97438 * 3 2 1 9 9 C 1.36580 * 120.11500 * 0.69275 * 8 3 2 10 10 C 1.38918 * 120.22160 * 180.27622 * 9 8 3 11 11 F 1.35099 * 119.77955 * 179.70970 * 10 9 8 12 12 C 1.38960 * 120.44329 * 359.69031 * 10 9 8 13 13 C 1.36551 * 120.21416 * 0.04369 * 12 10 9 14 14 C 1.40746 * 120.11167 * 180.42426 * 8 3 2 15 15 C 1.41321 * 120.21725 * 0.02680 * 14 8 3 16 16 H 1.07998 * 119.99536 * 327.85036 * 15 14 8 17 17 C 1.39923 * 119.99891 * 147.56822 * 15 14 8 18 18 N 1.30847 * 119.99839 * 344.19351 * 17 15 14 19 19 Si 1.86794 * 119.99756 * 164.19430 * 17 15 14 20 20 H 1.48500 * 109.47281 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47018 * 119.99880 * 19 17 15 22 22 H 1.48501 * 109.47096 * 239.99704 * 19 17 15 23 23 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47296 * 300.00365 * 1 2 3 25 25 H 1.09000 * 109.47256 * 60.00187 * 1 2 3 26 26 H 1.08995 * 109.47150 * 240.00117 * 2 1 3 27 27 H 1.09000 * 109.47256 * 119.99813 * 2 1 3 28 28 H 1.09002 * 109.46996 * 178.10386 * 4 3 2 29 29 H 1.08999 * 109.46647 * 298.10248 * 4 3 2 30 30 H 1.08994 * 109.47272 * 58.10272 * 4 3 2 31 31 H 0.96708 * 116.99658 * 179.97438 * 7 5 3 32 32 H 1.08004 * 119.88862 * 359.97438 * 9 8 3 33 33 H 1.07995 * 119.89532 * 180.02562 * 12 10 9 34 34 H 1.08006 * 120.10886 * 179.97438 * 13 12 10 35 35 H 0.97004 * 119.99497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2493 5 6 1.5376 2.1529 -1.2305 6 8 0.8430 3.1353 -1.1197 7 8 1.8619 1.6943 -2.4496 8 6 3.5470 1.4425 0.0006 9 6 4.2323 0.2612 -0.0132 10 6 5.6214 0.2585 -0.0068 11 9 6.2902 -0.9153 -0.0147 12 6 6.3277 1.4552 0.0071 13 6 5.6608 2.6467 0.0156 14 6 4.2531 2.6600 0.0098 15 6 3.5535 3.8879 0.0190 16 1 2.5981 3.9687 -0.4782 17 6 4.0958 4.9972 0.6772 18 7 5.0728 4.8371 1.5327 19 14 3.4250 6.7065 0.3344 20 1 2.3309 6.6176 -0.6656 21 1 2.8993 7.2935 1.5931 22 1 4.5121 7.5674 -0.1971 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.9208 3.1812 1.2663 29 1 0.4405 2.1933 1.2324 30 1 1.8652 1.6308 2.1389 31 1 1.5158 2.1831 -3.2089 32 1 3.6923 -0.6741 -0.0242 33 1 7.4076 1.4428 0.0115 34 1 6.2115 3.5758 0.0269 35 1 5.4485 5.6061 1.9893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725432446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:56 Heat of formation + Delta-G solvation = -147.266353 kcal Electronic energy + Delta-G solvation = -21159.179676 eV Core-core repulsion = 17842.222559 eV Total energy + Delta-G solvation = -3316.957117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.29606 -41.81707 -39.55044 -37.09370 -36.63548 -35.43290 -32.13474 -31.34322 -29.60628 -27.31669 -26.11083 -24.40199 -23.13365 -22.27771 -20.42600 -19.40062 -18.81615 -18.08626 -17.41178 -16.80652 -16.56933 -16.29085 -16.04718 -15.72784 -15.30343 -14.90942 -14.49470 -14.12605 -13.92856 -13.87434 -13.66755 -13.00426 -12.98702 -12.86286 -12.69129 -12.63299 -12.47808 -12.31910 -12.13691 -12.02224 -11.63148 -11.45744 -11.19132 -11.06738 -10.98928 -9.53457 -9.12205 -8.69378 -6.33416 0.72905 0.87999 1.35933 1.39626 1.45475 1.49114 2.18794 2.35455 2.64637 3.51089 3.77884 3.87126 4.06351 4.12953 4.31458 4.41291 4.49168 4.69524 4.71503 4.81163 4.99978 5.05548 5.09478 5.11524 5.20320 5.23725 5.28768 5.38680 5.53694 5.64195 5.71892 5.77653 5.89474 6.04749 6.25249 6.59143 6.86530 6.90007 7.18418 8.29380 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.010903 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.076358 B = 2567.594037 C = 3925.252178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C 0.021 3.979 4 C -0.134 4.134 5 C 0.506 3.494 6 O -0.545 6.545 7 O -0.512 6.512 8 C -0.170 4.170 9 C -0.099 4.099 10 C -0.053 4.053 11 F -0.168 7.168 12 C -0.129 4.129 13 C -0.155 4.155 14 C 0.093 3.907 15 C -0.484 4.484 16 H 0.092 0.908 17 C 0.046 3.954 18 N -0.816 5.816 19 Si 0.958 3.042 20 H -0.268 1.268 21 H -0.265 1.265 22 H -0.263 1.263 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.417 0.583 32 H 0.139 0.861 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 -4.838 -2.668 8.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C 0.020 3.980 4 C -0.191 4.191 5 C 0.351 3.649 6 O -0.436 6.436 7 O -0.324 6.324 8 C -0.172 4.172 9 C -0.118 4.118 10 C -0.073 4.073 11 F -0.147 7.147 12 C -0.148 4.148 13 C -0.175 4.175 14 C 0.091 3.909 15 C -0.512 4.512 16 H 0.110 0.890 17 C -0.170 4.170 18 N -0.442 5.442 19 Si 0.780 3.220 20 H -0.192 1.192 21 H -0.190 1.190 22 H -0.187 1.187 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.277 0.723 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.811 -4.705 -2.133 7.776 hybrid contribution 0.165 1.253 -0.510 1.363 sum -5.646 -3.452 -2.643 7.126 Atomic orbital electron populations 1.21878 0.94323 1.03085 1.01647 1.21715 0.96896 0.92380 1.03915 1.19057 0.92277 0.96897 0.89795 1.21830 1.00346 1.02186 0.94702 1.23543 0.74783 0.81475 0.85095 1.90608 1.38295 1.27036 1.87640 1.84549 1.72205 1.58747 1.16900 1.19057 0.92630 0.92456 1.13048 1.20510 0.91595 0.98714 1.00950 1.17442 0.90507 0.80257 1.19077 1.91297 1.81104 1.46580 1.95749 1.20654 0.99363 0.91952 1.02829 1.20770 0.94729 0.95898 1.06077 1.17776 0.92031 0.92733 0.88395 1.20053 1.06337 0.94462 1.30388 0.89004 1.26463 0.94049 1.03896 0.92583 1.69846 1.21707 1.34166 1.18481 0.85500 0.79241 0.77864 0.79405 1.19176 1.18951 1.18712 0.89912 0.91886 0.94179 0.90444 0.89378 0.91635 0.91587 0.91679 0.72294 0.84360 0.86577 0.87753 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.31 71.98 0.67 -3.03 16 2 C -0.11 -3.23 3.59 30.59 0.11 -3.12 16 3 C 0.02 0.78 0.48 -53.67 -0.03 0.75 16 4 C -0.13 -5.10 7.12 71.98 0.51 -4.59 16 5 C 0.51 19.45 4.00 71.24 0.29 19.74 16 6 O -0.54 -23.33 15.05 21.99 0.33 -23.00 16 7 O -0.51 -16.77 13.24 -51.43 -0.68 -17.45 16 8 C -0.17 -7.42 4.70 -19.64 -0.09 -7.51 16 9 C -0.10 -4.09 8.91 22.04 0.20 -3.89 16 10 C -0.05 -2.34 7.32 22.61 0.17 -2.17 16 11 F -0.17 -7.04 17.26 44.97 0.78 -6.26 16 12 C -0.13 -5.89 9.96 22.05 0.22 -5.67 16 13 C -0.16 -7.71 8.61 22.50 0.19 -7.52 16 14 C 0.09 4.62 5.31 -21.29 -0.11 4.51 16 15 C -0.48 -24.32 5.89 23.44 0.14 -24.18 16 16 H 0.09 4.68 4.02 -2.91 -0.01 4.67 16 17 C 0.05 2.25 5.12 85.25 0.44 2.69 16 18 N -0.82 -40.69 11.38 21.82 0.25 -40.44 16 19 Si 0.96 38.54 29.59 68.60 2.03 40.57 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.52 6.47 -2.39 -0.02 1.50 16 25 H 0.04 1.03 7.22 -2.39 -0.02 1.02 16 26 H 0.08 2.17 7.45 -2.39 -0.02 2.16 16 27 H 0.09 2.36 7.54 -2.39 -0.02 2.34 16 28 H 0.06 2.96 5.23 -2.39 -0.01 2.94 16 29 H 0.07 2.24 6.44 -2.39 -0.02 2.23 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.42 9.64 9.10 -74.05 -0.67 8.96 16 32 H 0.14 4.81 5.85 -2.91 -0.02 4.79 16 33 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.10 5.39 6.68 -2.91 -0.02 5.37 16 35 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 Total: -1.00 -58.87 286.82 5.87 -53.00 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.47 Total: 27.57 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 2.70 Total: -33.99 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.25 Total: -40.44 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -0.35 Total: -40.45 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.78 Total: -6.26 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -58.87 5.87 -53.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725432446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.266 kcal (2) G-P(sol) polarization free energy of solvation -58.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds