Wall clock time and date at job start Mon Mar 30 2020 07:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46655 * 2 1 4 4 C 1.50700 * 109.46692 * 239.99963 * 2 1 3 5 5 H 1.07998 * 119.99933 * 239.99912 * 4 2 1 6 6 C 1.37875 * 120.00178 * 60.00421 * 4 2 1 7 7 N 1.31522 * 119.99799 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00353 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46779 * 60.00145 * 8 6 4 10 10 H 1.48502 * 109.47451 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47305 * 300.00180 * 8 6 4 12 12 O 1.45195 * 109.46940 * 120.00442 * 2 1 3 13 13 C 1.34234 * 116.99602 * 269.99961 * 12 2 1 14 14 O 1.20820 * 120.00151 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99783 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.47622 * 59.99431 * 15 13 12 17 17 C 1.53005 * 109.47071 * 299.99401 * 15 13 12 18 18 C 1.50699 * 109.47149 * 180.02562 * 15 13 12 19 19 C 1.38264 * 119.99175 * 60.01641 * 18 15 13 20 20 C 1.38223 * 120.05372 * 179.97438 * 19 18 15 21 21 C 1.38223 * 120.02448 * 0.02779 * 20 19 18 22 22 C 1.38437 * 119.97390 * 359.69495 * 21 20 19 23 23 F 1.35099 * 120.02356 * 180.32333 * 22 21 20 24 24 C 1.38183 * 119.98467 * 240.00069 * 18 15 13 25 25 H 1.09000 * 109.47276 * 59.99657 * 1 2 3 26 26 H 1.09003 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47456 * 299.99682 * 1 2 3 28 28 H 0.96998 * 119.99828 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47161 * 179.97438 * 17 15 13 30 30 H 1.08997 * 109.47176 * 300.00937 * 17 15 13 31 31 H 1.09007 * 109.46603 * 59.99893 * 17 15 13 32 32 H 1.08004 * 119.96758 * 359.97438 * 19 18 15 33 33 H 1.07999 * 119.98701 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.01081 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.01017 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8276 -2.5197 -4.0082 10 1 1.8267 -0.4199 -5.2205 11 1 3.8073 -1.1191 -4.0079 12 8 2.0139 -0.6846 1.1855 13 6 2.2170 0.0639 2.2811 14 8 1.9973 1.2516 2.2506 15 6 2.7192 -0.5772 3.5491 16 1 3.6882 -1.0402 3.3632 17 6 1.7241 -1.6442 4.0098 18 6 2.8609 0.4728 4.6209 19 6 1.7565 1.1981 5.0282 20 6 1.8849 2.1610 6.0114 21 6 3.1180 2.4003 6.5883 22 6 4.2234 1.6708 6.1854 23 9 5.4278 1.8993 6.7531 24 6 4.0946 0.7100 5.1964 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7087 1.1614 -3.4843 29 1 2.0875 -2.1082 4.9267 30 1 0.7550 -1.1812 4.1957 31 1 1.6211 -2.4037 3.2347 32 1 0.7927 1.0120 4.5776 33 1 1.0214 2.7266 6.3291 34 1 3.2180 3.1525 7.3568 35 1 4.9570 0.1429 4.8785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744135751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:10 Heat of formation + Delta-G solvation = -120.582138 kcal Electronic energy + Delta-G solvation = -19777.563596 eV Core-core repulsion = 16461.763593 eV Total energy + Delta-G solvation = -3315.800002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.91301 -40.15348 -38.71134 -35.79665 -34.13471 -33.22414 -30.74720 -29.79635 -29.17334 -25.34638 -24.92201 -22.85066 -22.77183 -20.95746 -19.39804 -17.41479 -17.06157 -16.56539 -16.18152 -16.12929 -15.62315 -15.26202 -15.05659 -14.57937 -14.25707 -13.65060 -13.23789 -13.06537 -12.79095 -12.30244 -12.23134 -12.08041 -11.77452 -11.63762 -11.44608 -11.14040 -11.05459 -10.91606 -10.84793 -10.41116 -10.29694 -9.61957 -9.53433 -9.00659 -8.93594 -8.65238 -8.50568 -6.19965 -4.27166 1.11664 1.19001 2.95306 3.25227 3.28270 3.30139 3.40800 3.80194 4.17961 4.33191 4.50706 4.72601 4.94123 5.12125 5.13256 5.19441 5.21791 5.36832 5.48635 5.76380 5.83523 5.90749 6.03333 6.04134 6.17749 6.31654 6.49081 6.61387 6.84493 6.86441 6.89265 7.14587 7.57785 7.70461 7.91572 8.12016 8.61028 8.86059 9.38420 10.87380 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033114 B = 0.004153 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.358587 B = 6740.017449 C = 6864.468281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.353 6.353 13 C 0.456 3.544 14 O -0.513 6.513 15 C -0.050 4.050 16 H 0.113 0.887 17 C -0.139 4.139 18 C -0.038 4.038 19 C -0.093 4.093 20 C -0.093 4.093 21 C -0.155 4.155 22 C 0.092 3.908 23 F -0.143 7.143 24 C -0.144 4.144 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.015 0.985 28 H 0.267 0.733 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 -1.516 16.328 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.269 6.269 13 C 0.298 3.702 14 O -0.402 6.402 15 C -0.069 4.069 16 H 0.131 0.869 17 C -0.196 4.196 18 C -0.039 4.039 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.174 4.174 22 C 0.072 3.928 23 F -0.122 7.122 24 C -0.163 4.163 25 H 0.117 0.883 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.935 -1.038 16.128 16.277 hybrid contribution 0.497 -0.111 -0.848 0.989 sum 2.432 -1.148 15.280 15.514 Atomic orbital electron populations 1.22154 0.97549 1.00079 1.01369 1.20637 0.91380 0.93915 0.77754 0.93607 1.20986 1.32602 1.13511 0.88909 0.91359 1.24885 0.94905 0.95085 0.99062 1.69891 1.35983 1.22527 1.24297 0.86330 0.79231 0.79536 0.81016 1.19920 1.21021 1.19980 1.86473 1.75711 1.43548 1.21200 1.23049 0.75225 0.85964 0.85984 1.90622 1.48283 1.16731 1.84577 1.19962 1.02597 0.95177 0.89192 0.86906 1.21761 0.97994 0.97609 1.02218 1.19237 0.92781 0.96402 0.95441 1.21059 0.99036 0.95152 0.95849 1.20969 0.96826 0.97367 0.95907 1.21110 0.92263 1.01322 1.02681 1.17579 0.80792 0.98430 0.95957 1.91483 1.43120 1.93894 1.83689 1.20981 0.98336 0.99345 0.97605 0.88270 0.94424 0.96581 0.92335 0.91342 0.91933 0.90253 0.85365 0.84983 0.84977 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.33 37.16 0.35 -3.49 16 2 C 0.22 5.72 2.56 -27.88 -0.07 5.65 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 4 C -0.52 -14.54 8.90 -34.44 -0.31 -14.84 16 5 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 8 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 O -0.35 -8.17 9.77 -39.27 -0.38 -8.55 16 13 C 0.46 9.20 7.10 36.01 0.26 9.46 16 14 O -0.51 -11.77 14.33 -18.75 -0.27 -12.04 16 15 C -0.05 -0.73 3.01 -92.92 -0.28 -1.00 16 16 H 0.11 1.43 7.88 -51.93 -0.41 1.02 16 17 C -0.14 -1.65 8.94 37.16 0.33 -1.32 16 18 C -0.04 -0.54 4.39 -104.63 -0.46 -1.00 16 19 C -0.09 -1.26 7.93 -39.58 -0.31 -1.57 16 20 C -0.09 -1.07 10.04 -39.59 -0.40 -1.47 16 21 C -0.15 -1.78 10.03 -39.51 -0.40 -2.18 16 22 C 0.09 1.18 7.30 -39.42 -0.29 0.89 16 23 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 24 C -0.14 -1.87 9.65 -39.51 -0.38 -2.25 16 25 H 0.10 2.66 6.07 -51.93 -0.32 2.34 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.74 7.38 -51.93 -0.38 0.35 16 31 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.13 1.74 7.51 -52.48 -0.39 1.35 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.52 7.95 -52.49 -0.42 1.10 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -30.62 306.74 -6.81 -37.43 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.37 Total: 0.47 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.05 Total: -11.51 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.63 Total: -24.52 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.65 Total: -20.59 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.62 -6.81 -37.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744135751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.153 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds