Wall clock time and date at job start Mon Mar 30 2020 07:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46655 * 2 1 4 4 C 1.50700 * 109.46692 * 239.99963 * 2 1 3 5 5 H 1.07998 * 119.99933 * 239.99912 * 4 2 1 6 6 C 1.37875 * 120.00178 * 60.00421 * 4 2 1 7 7 N 1.31522 * 119.99799 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00353 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46779 * 60.00145 * 8 6 4 10 10 H 1.48502 * 109.47451 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47305 * 300.00180 * 8 6 4 12 12 O 1.45195 * 109.46940 * 120.00442 * 2 1 3 13 13 C 1.34234 * 116.99602 * 269.99961 * 12 2 1 14 14 O 1.20820 * 120.00151 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99783 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.47622 * 59.99431 * 15 13 12 17 17 C 1.53005 * 109.47071 * 299.99401 * 15 13 12 18 18 C 1.50699 * 109.47149 * 180.02562 * 15 13 12 19 19 C 1.38264 * 119.99175 * 60.01641 * 18 15 13 20 20 C 1.38223 * 120.05372 * 179.97438 * 19 18 15 21 21 C 1.38223 * 120.02448 * 0.02779 * 20 19 18 22 22 C 1.38437 * 119.97390 * 359.69495 * 21 20 19 23 23 F 1.35099 * 120.02356 * 180.32333 * 22 21 20 24 24 C 1.38183 * 119.98467 * 240.00069 * 18 15 13 25 25 H 1.09000 * 109.47276 * 59.99657 * 1 2 3 26 26 H 1.09003 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47456 * 299.99682 * 1 2 3 28 28 H 0.96998 * 119.99828 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47161 * 179.97438 * 17 15 13 30 30 H 1.08997 * 109.47176 * 300.00937 * 17 15 13 31 31 H 1.09007 * 109.46603 * 59.99893 * 17 15 13 32 32 H 1.08004 * 119.96758 * 359.97438 * 19 18 15 33 33 H 1.07999 * 119.98701 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.01081 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.01017 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8276 -2.5197 -4.0082 10 1 1.8267 -0.4199 -5.2205 11 1 3.8073 -1.1191 -4.0079 12 8 2.0139 -0.6846 1.1855 13 6 2.2170 0.0639 2.2811 14 8 1.9973 1.2516 2.2506 15 6 2.7192 -0.5772 3.5491 16 1 3.6882 -1.0402 3.3632 17 6 1.7241 -1.6442 4.0098 18 6 2.8609 0.4728 4.6209 19 6 1.7565 1.1981 5.0282 20 6 1.8849 2.1610 6.0114 21 6 3.1180 2.4003 6.5883 22 6 4.2234 1.6708 6.1854 23 9 5.4278 1.8993 6.7531 24 6 4.0946 0.7100 5.1964 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7087 1.1614 -3.4843 29 1 2.0875 -2.1082 4.9267 30 1 0.7550 -1.1812 4.1957 31 1 1.6211 -2.4037 3.2347 32 1 0.7927 1.0120 4.5776 33 1 1.0214 2.7266 6.3291 34 1 3.2180 3.1525 7.3568 35 1 4.9570 0.1429 4.8785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744135751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:10 Heat of formation + Delta-G solvation = -136.223858 kcal Electronic energy + Delta-G solvation = -19778.241872 eV Core-core repulsion = 16461.763593 eV Total energy + Delta-G solvation = -3316.478278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.90041 -41.63847 -39.95555 -37.56809 -35.47667 -35.09950 -31.79965 -31.59291 -30.33051 -27.45390 -26.11474 -24.26996 -23.76188 -22.56090 -20.96429 -18.92881 -18.54233 -18.16054 -17.47709 -17.18249 -16.94032 -16.68408 -16.58611 -16.22778 -15.40732 -14.90375 -14.60466 -14.32579 -14.13168 -13.96618 -13.66273 -13.21733 -13.18459 -13.08177 -12.87611 -12.79909 -12.70603 -12.42650 -12.35229 -12.17119 -11.88860 -11.55554 -11.20012 -10.98959 -10.58964 -9.98613 -9.65161 -8.28506 -6.45501 0.12183 0.21987 1.34030 1.42367 1.45906 1.53942 1.98418 2.40018 2.68638 3.02262 3.16691 3.46519 3.73162 3.97966 4.07440 4.12631 4.19816 4.22480 4.42911 4.53682 4.76057 4.78911 4.82267 4.86281 4.91807 5.06175 5.10335 5.16589 5.24095 5.35004 5.48914 5.49843 5.63830 5.90242 5.93266 6.09933 6.59860 6.97438 7.26732 8.78842 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033114 B = 0.004153 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.358587 B = 6740.017449 C = 6864.468281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.218 3.782 3 H 0.005 0.995 4 C -0.549 4.549 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.982 3.018 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.269 1.269 12 O -0.358 6.358 13 C 0.450 3.550 14 O -0.545 6.545 15 C -0.039 4.039 16 H 0.134 0.866 17 C -0.134 4.134 18 C -0.055 4.055 19 C -0.109 4.109 20 C -0.091 4.091 21 C -0.150 4.150 22 C 0.078 3.922 23 F -0.146 7.146 24 C -0.149 4.149 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.024 0.976 28 H 0.271 0.729 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -2.371 17.199 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.023 0.977 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.805 3.195 9 H -0.187 1.187 10 H -0.203 1.203 11 H -0.194 1.194 12 O -0.275 6.275 13 C 0.294 3.706 14 O -0.435 6.435 15 C -0.058 4.058 16 H 0.151 0.849 17 C -0.191 4.191 18 C -0.055 4.055 19 C -0.127 4.127 20 C -0.109 4.109 21 C -0.168 4.168 22 C 0.059 3.941 23 F -0.124 7.124 24 C -0.167 4.167 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.404 -1.901 17.028 17.301 hybrid contribution 0.359 0.241 -1.021 1.109 sum 2.762 -1.660 16.007 16.328 Atomic orbital electron populations 1.21963 0.96659 1.00425 1.00767 1.20317 0.92068 0.91932 0.79224 0.97746 1.21283 1.33461 1.13947 0.89978 0.91354 1.25823 0.94698 0.95643 1.02142 1.70016 1.36576 1.23672 1.25247 0.85248 0.78761 0.78698 0.76805 1.18716 1.20313 1.19392 1.86465 1.76112 1.43591 1.21306 1.24260 0.74051 0.85766 0.86532 1.90598 1.49615 1.18300 1.85027 1.20076 1.03861 0.95758 0.86130 0.84864 1.21788 0.97363 0.96592 1.03376 1.19234 0.93423 0.97035 0.95835 1.21195 0.98763 0.96043 0.96688 1.21274 0.97923 0.96723 0.94981 1.21439 0.91615 1.01120 1.02627 1.17773 0.81145 0.98879 0.96270 1.91477 1.43319 1.93927 1.83714 1.21137 0.98415 0.99574 0.97623 0.90270 0.93436 0.95691 0.92028 0.88150 0.92128 0.90748 0.86112 0.82306 0.82384 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.16 9.33 71.98 0.67 -6.48 16 2 C 0.22 11.90 2.56 29.85 0.08 11.98 16 3 H 0.00 0.29 7.16 -2.39 -0.02 0.27 16 4 C -0.55 -31.01 8.90 25.60 0.23 -30.78 16 5 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 8 Si 0.98 42.59 29.54 68.60 2.03 44.61 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 O -0.36 -16.85 9.77 -51.45 -0.50 -17.35 16 13 C 0.45 18.36 7.10 71.24 0.51 18.87 16 14 O -0.54 -25.71 14.33 21.98 0.31 -25.39 16 15 C -0.04 -1.10 3.01 -12.28 -0.04 -1.14 16 16 H 0.13 3.16 7.88 -2.39 -0.02 3.14 16 17 C -0.13 -2.98 8.94 71.98 0.64 -2.33 16 18 C -0.06 -1.48 4.39 -19.87 -0.09 -1.56 16 19 C -0.11 -2.84 7.93 22.27 0.18 -2.67 16 20 C -0.09 -1.93 10.04 22.26 0.22 -1.71 16 21 C -0.15 -3.09 10.03 22.31 0.22 -2.87 16 22 C 0.08 1.88 7.30 22.38 0.16 2.04 16 23 F -0.15 -3.55 17.27 44.97 0.78 -2.78 16 24 C -0.15 -3.66 9.65 22.31 0.22 -3.44 16 25 H 0.08 4.36 6.07 -2.39 -0.01 4.34 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.36 7.38 -2.39 -0.02 1.34 16 31 H 0.07 1.73 8.11 -2.38 -0.02 1.71 16 32 H 0.12 3.27 7.51 -2.91 -0.02 3.25 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.15 3.10 7.95 -2.91 -0.02 3.08 16 Total: -1.00 -66.83 306.74 7.40 -59.43 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.09 Total: 12.59 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 3.45 Total: -18.73 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.24 Total: -52.39 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.19 Total: -42.74 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -66.83 7.40 -59.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744135751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.796 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds