Wall clock time and date at job start Mon Mar 30 2020 07:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47340 * 2 1 4 4 C 1.50702 * 109.47315 * 120.00654 * 2 1 3 5 5 H 1.07998 * 119.99762 * 119.99741 * 4 2 1 6 6 C 1.37879 * 119.99634 * 299.99627 * 4 2 1 7 7 N 1.31511 * 120.00168 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99750 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47036 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46979 * 119.99838 * 8 6 4 11 11 H 1.48494 * 109.47403 * 240.00085 * 8 6 4 12 12 O 1.45203 * 109.46578 * 240.00471 * 2 1 3 13 13 C 1.34228 * 117.00192 * 90.00518 * 12 2 1 14 14 O 1.20826 * 119.99914 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00400 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.46613 * 299.99660 * 15 13 12 17 17 C 1.53006 * 109.47239 * 59.99268 * 15 13 12 18 18 C 1.50698 * 109.47576 * 179.97438 * 15 13 12 19 19 C 1.38275 * 119.98281 * 299.72837 * 18 15 13 20 20 C 1.38224 * 120.04940 * 179.72815 * 19 18 15 21 21 C 1.38220 * 120.02260 * 0.54141 * 20 19 18 22 22 C 1.38441 * 119.97576 * 359.72617 * 21 20 19 23 23 F 1.35104 * 120.02696 * 180.02562 * 22 21 20 24 24 C 1.38167 * 119.99218 * 119.99814 * 18 15 13 25 25 H 1.08994 * 109.47402 * 59.99533 * 1 2 3 26 26 H 1.09002 * 109.46867 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46655 * 299.99491 * 1 2 3 28 28 H 0.97002 * 119.99697 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47002 * 60.00070 * 17 15 13 30 30 H 1.08993 * 109.46955 * 180.02562 * 17 15 13 31 31 H 1.09000 * 109.47050 * 300.00336 * 17 15 13 32 32 H 1.07992 * 119.97377 * 359.97201 * 19 18 15 33 33 H 1.07991 * 119.98813 * 180.27174 * 20 19 18 34 34 H 1.07997 * 120.01093 * 179.70873 * 21 20 19 35 35 H 1.08003 * 120.01005 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3215 -1.1207 4.0078 9 1 3.1466 -2.2873 3.6035 10 1 3.1469 -0.1878 4.8164 11 1 1.1663 -1.5870 4.8159 12 8 2.0139 -0.6844 -1.1857 13 6 2.2171 0.0641 -2.2812 14 8 1.9975 1.2519 -2.2505 15 6 2.7192 -0.5768 -3.5493 16 1 3.6883 -1.0398 -3.3633 17 6 1.7242 -1.6439 -4.0100 18 6 2.8610 0.4733 -4.6209 19 6 1.7554 1.1950 -5.0317 20 6 1.8850 2.1624 -6.0105 21 6 3.1180 2.4015 -6.5877 22 6 4.2245 1.6756 -6.1810 23 9 5.4303 1.9088 -6.7441 24 6 4.0945 0.7106 -5.1964 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 0.7084 1.1606 3.4845 29 1 0.7550 -1.1809 -4.1959 30 1 2.0875 -2.1077 -4.9270 31 1 1.6213 -2.4035 -3.2351 32 1 0.7908 1.0056 -4.5847 33 1 1.0218 2.7285 -6.3275 34 1 3.2181 3.1541 -7.3557 35 1 4.9569 0.1434 -4.8787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744135756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:12 Heat of formation + Delta-G solvation = -136.350570 kcal Electronic energy + Delta-G solvation = -19778.355443 eV Core-core repulsion = 16461.871670 eV Total energy + Delta-G solvation = -3316.483773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.89972 -41.63785 -39.95645 -37.56810 -35.47856 -35.10176 -31.80164 -31.59471 -30.32914 -27.45875 -26.11606 -24.27120 -23.76167 -22.56284 -20.96446 -18.93218 -18.54313 -18.16402 -17.47868 -17.18131 -16.94645 -16.68437 -16.58669 -16.22082 -15.40659 -14.90705 -14.60496 -14.32947 -14.13297 -13.96893 -13.66659 -13.21465 -13.19114 -13.08307 -12.89883 -12.79103 -12.70623 -12.42823 -12.35919 -12.14338 -11.88966 -11.55907 -11.20118 -10.97467 -10.60254 -9.98633 -9.65126 -8.29137 -6.45836 0.12175 0.22002 1.34000 1.42336 1.42671 1.56557 1.98476 2.39702 2.68673 3.01850 3.16644 3.46518 3.73132 3.97960 4.07501 4.12655 4.19793 4.22404 4.42928 4.53621 4.76045 4.78865 4.82225 4.86218 4.91816 5.06176 5.10353 5.16550 5.24089 5.35065 5.49103 5.49823 5.63778 5.90233 5.93168 6.09734 6.60066 6.97440 7.26546 8.78698 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033077 B = 0.004154 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.311368 B = 6738.141891 C = 6862.721083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.547 4.547 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.982 3.018 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.271 1.271 12 O -0.358 6.358 13 C 0.450 3.550 14 O -0.545 6.545 15 C -0.039 4.039 16 H 0.134 0.866 17 C -0.134 4.134 18 C -0.055 4.055 19 C -0.109 4.109 20 C -0.091 4.091 21 C -0.150 4.150 22 C 0.078 3.922 23 F -0.146 7.146 24 C -0.149 4.149 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.270 0.730 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -2.372 -17.216 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.164 3.836 3 H 0.023 0.977 4 C -0.585 4.585 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.805 3.195 9 H -0.186 1.186 10 H -0.203 1.203 11 H -0.196 1.196 12 O -0.275 6.275 13 C 0.294 3.706 14 O -0.436 6.436 15 C -0.058 4.058 16 H 0.151 0.849 17 C -0.191 4.191 18 C -0.055 4.055 19 C -0.127 4.127 20 C -0.109 4.109 21 C -0.168 4.168 22 C 0.059 3.941 23 F -0.124 7.124 24 C -0.168 4.168 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.401 -1.907 -17.048 17.321 hybrid contribution 0.348 0.256 1.031 1.118 sum 2.748 -1.650 -16.017 16.334 Atomic orbital electron populations 1.21961 0.96646 1.00441 1.00769 1.20331 0.92083 0.91946 0.79236 0.97731 1.21342 1.33314 1.13862 0.89962 0.91371 1.25823 0.94717 0.95648 1.02154 1.70026 1.36654 1.23737 1.25126 0.85145 0.78360 0.78441 0.77527 1.18626 1.20272 1.19638 1.86466 1.76111 1.43593 1.21306 1.24257 0.74049 0.85765 0.86531 1.90600 1.49621 1.18300 1.85031 1.20074 1.03862 0.95756 0.86136 0.84869 1.21789 0.97368 0.96591 1.03375 1.19231 0.93424 0.97063 0.95789 1.21198 0.98743 0.96044 0.96726 1.21273 0.97933 0.96672 0.95010 1.21438 0.91604 1.01195 1.02575 1.17776 0.81092 0.98831 0.96361 1.91478 1.43195 1.93846 1.83920 1.21130 0.98431 0.99508 0.97692 0.95682 0.93412 0.90278 0.92035 0.92119 0.88150 0.90749 0.86096 0.82307 0.82389 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.15 9.33 71.98 0.67 -6.48 16 2 C 0.22 11.87 2.56 29.85 0.08 11.95 16 3 H 0.00 0.30 7.16 -2.39 -0.02 0.28 16 4 C -0.55 -30.91 8.90 25.60 0.23 -30.68 16 5 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -52.61 11.32 21.45 0.24 -52.36 16 8 Si 0.98 42.63 29.54 68.60 2.03 44.66 16 9 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 12 O -0.36 -16.85 9.77 -51.40 -0.50 -17.35 16 13 C 0.45 18.37 7.10 71.23 0.51 18.87 16 14 O -0.54 -25.71 14.35 21.97 0.32 -25.39 16 15 C -0.04 -1.10 3.01 -12.29 -0.04 -1.14 16 16 H 0.13 3.16 7.88 -2.39 -0.02 3.14 16 17 C -0.13 -2.98 8.93 71.98 0.64 -2.33 16 18 C -0.05 -1.47 4.39 -19.87 -0.09 -1.56 16 19 C -0.11 -2.84 7.94 22.28 0.18 -2.67 16 20 C -0.09 -1.93 10.04 22.26 0.22 -1.71 16 21 C -0.15 -3.10 10.03 22.31 0.22 -2.87 16 22 C 0.08 1.88 7.30 22.37 0.16 2.05 16 23 F -0.15 -3.56 17.27 44.97 0.78 -2.78 16 24 C -0.15 -3.66 9.65 22.31 0.22 -3.45 16 25 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.08 4.35 6.07 -2.39 -0.01 4.34 16 28 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.06 1.36 7.37 -2.39 -0.02 1.34 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 32 H 0.12 3.26 7.51 -2.91 -0.02 3.24 16 33 H 0.16 2.42 8.06 -2.92 -0.02 2.40 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.15 3.10 7.95 -2.91 -0.02 3.08 16 Total: -1.00 -66.92 306.74 7.40 -59.52 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.09 Total: 12.39 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 3.45 Total: -18.69 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.24 Total: -52.36 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.19 Total: -42.74 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -66.92 7.40 -59.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744135756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.827 kcal (2) G-P(sol) polarization free energy of solvation -66.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds