Wall clock time and date at job start Mon Mar 30 2020 07:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47052 * 2 1 4 4 C 1.50696 * 109.46801 * 240.00417 * 2 1 3 5 5 H 1.08004 * 120.00205 * 239.99234 * 4 2 1 6 6 C 1.37884 * 120.00471 * 59.99838 * 4 2 1 7 7 N 1.31511 * 119.99623 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00225 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46738 * 90.00006 * 8 6 4 10 10 H 1.48501 * 109.47185 * 209.99945 * 8 6 4 11 11 H 1.48503 * 109.47310 * 330.00249 * 8 6 4 12 12 O 1.45192 * 109.47407 * 120.00328 * 2 1 3 13 13 C 1.34230 * 117.00018 * 270.00214 * 12 2 1 14 14 O 1.20826 * 120.00015 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00046 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47060 * 299.99765 * 15 13 12 17 17 C 1.53002 * 109.47419 * 59.99846 * 15 13 12 18 18 C 1.50703 * 109.47064 * 179.97438 * 15 13 12 19 19 C 1.38271 * 119.98518 * 299.72377 * 18 15 13 20 20 C 1.38227 * 120.04905 * 179.72780 * 19 18 15 21 21 C 1.38218 * 120.02416 * 0.54479 * 20 19 18 22 22 C 1.38445 * 119.97590 * 359.73120 * 21 20 19 23 23 F 1.35103 * 120.02505 * 180.02562 * 22 21 20 24 24 C 1.38175 * 119.98595 * 119.99723 * 18 15 13 25 25 H 1.08998 * 109.47158 * 59.99789 * 1 2 3 26 26 H 1.09004 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46802 * 299.99450 * 1 2 3 28 28 H 0.96997 * 119.99950 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46986 * 300.00096 * 17 15 13 30 30 H 1.09002 * 109.47075 * 59.99368 * 17 15 13 31 31 H 1.08996 * 109.47407 * 180.02562 * 17 15 13 32 32 H 1.07995 * 119.97592 * 359.97438 * 19 18 15 33 33 H 1.07998 * 119.98822 * 180.27966 * 20 19 18 34 34 H 1.07996 * 120.01566 * 179.70776 * 21 20 19 35 35 H 1.07997 * 120.01235 * 0.02605 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3223 -1.1193 -4.0080 9 1 1.3445 -2.1614 -4.4124 10 1 2.4870 -0.1400 -5.1121 11 1 3.6307 -1.7564 -3.7121 12 8 2.0140 -0.6845 1.1854 13 6 2.2172 0.0639 2.2810 14 8 1.9982 1.2518 2.2504 15 6 2.7194 -0.5772 3.5490 16 1 2.0106 -1.3374 3.8772 17 6 4.0798 -1.2269 3.2879 18 6 2.8623 0.4730 4.6204 19 6 3.7182 1.5422 4.4303 20 6 3.8461 2.5091 5.4098 21 6 3.1267 2.4023 6.5851 22 6 2.2737 1.3292 6.7790 23 9 1.5697 1.2241 7.9273 24 6 2.1422 0.3641 5.7946 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7086 1.1614 -3.4843 29 1 3.9768 -1.9864 2.5128 30 1 4.7886 -0.4667 2.9596 31 1 4.4428 -1.6910 4.2049 32 1 4.2843 1.6239 3.5142 33 1 4.5115 3.3462 5.2583 34 1 3.2303 3.1554 7.3523 35 1 1.4774 -0.4737 5.9448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744135760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:18 Heat of formation + Delta-G solvation = -120.704024 kcal Electronic energy + Delta-G solvation = -19774.954309 eV Core-core repulsion = 16459.149022 eV Total energy + Delta-G solvation = -3315.805288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.91717 -40.15026 -38.71142 -35.79741 -34.12936 -33.22706 -30.74779 -29.79762 -29.15116 -25.36961 -24.90470 -22.85398 -22.76022 -20.93323 -19.43223 -17.41668 -16.99873 -16.57590 -16.18957 -16.16906 -15.62674 -15.26263 -15.09347 -14.56149 -14.17585 -13.61945 -13.31075 -13.05826 -12.83327 -12.30459 -12.12700 -12.00783 -11.87002 -11.68884 -11.35755 -11.18418 -11.05190 -10.89421 -10.84024 -10.40672 -10.29741 -9.62889 -9.52989 -9.01153 -8.92310 -8.65040 -8.51284 -6.20456 -4.27612 1.11806 1.19040 2.95112 3.23051 3.27974 3.31122 3.41001 3.80576 4.17686 4.32537 4.50952 4.72666 4.94328 5.12381 5.13851 5.19591 5.22927 5.37112 5.49388 5.76962 5.85087 5.92730 6.03809 6.04116 6.20296 6.33199 6.49679 6.62088 6.85106 6.87406 6.89933 7.14812 7.57692 7.70531 7.91524 8.11826 8.60879 8.85965 9.38010 10.86946 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038104 B = 0.004099 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.647125 B = 6829.203408 C = 6934.142219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.353 6.353 13 C 0.456 3.544 14 O -0.513 6.513 15 C -0.050 4.050 16 H 0.112 0.888 17 C -0.139 4.139 18 C -0.038 4.038 19 C -0.093 4.093 20 C -0.092 4.092 21 C -0.155 4.155 22 C 0.091 3.909 23 F -0.143 7.143 24 C -0.145 4.145 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 -0.933 15.315 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.269 6.269 13 C 0.298 3.702 14 O -0.402 6.402 15 C -0.069 4.069 16 H 0.130 0.870 17 C -0.196 4.196 18 C -0.039 4.039 19 C -0.111 4.111 20 C -0.110 4.110 21 C -0.174 4.174 22 C 0.072 3.928 23 F -0.122 7.122 24 C -0.163 4.163 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.172 -0.467 15.140 16.006 hybrid contribution -0.109 -0.213 -0.673 0.715 sum 5.063 -0.680 14.466 15.342 Atomic orbital electron populations 1.22167 0.97613 1.00101 1.01412 1.20639 0.91363 0.93917 0.77761 0.93579 1.21022 1.32538 1.13479 0.88868 0.91295 1.24889 0.94929 0.95071 0.99074 1.69899 1.36043 1.22537 1.24194 0.86277 0.79304 0.79141 0.81429 1.20349 1.20974 1.19607 1.86471 1.75676 1.43581 1.21203 1.23053 0.75182 0.86017 0.85978 1.90623 1.48285 1.16778 1.84537 1.19961 1.00635 0.96564 0.89719 0.87008 1.21765 0.93610 1.01384 1.02868 1.19239 0.95646 0.95649 0.93319 1.21080 0.97886 0.93240 0.98875 1.20976 0.98760 0.98753 0.92528 1.21111 0.98495 0.98162 0.99625 1.17581 0.94987 0.97016 0.83205 1.91482 1.77099 1.96142 1.47483 1.20966 1.01887 0.99950 0.93535 0.88238 0.94433 0.96561 0.92387 0.90180 0.91829 0.91394 0.85280 0.84959 0.84982 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.33 37.16 0.35 -3.59 16 2 C 0.22 5.72 2.56 -27.88 -0.07 5.65 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 4 C -0.52 -14.42 8.90 -34.44 -0.31 -14.73 16 5 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 O -0.35 -8.16 9.77 -39.26 -0.38 -8.55 16 13 C 0.46 9.20 7.10 36.01 0.26 9.45 16 14 O -0.51 -11.77 14.35 -18.75 -0.27 -12.04 16 15 C -0.05 -0.72 3.01 -92.92 -0.28 -1.00 16 16 H 0.11 1.39 7.88 -51.93 -0.41 0.98 16 17 C -0.14 -1.70 8.93 37.16 0.33 -1.37 16 18 C -0.04 -0.53 4.39 -104.63 -0.46 -0.99 16 19 C -0.09 -1.27 7.94 -39.57 -0.31 -1.58 16 20 C -0.09 -1.07 10.04 -39.59 -0.40 -1.47 16 21 C -0.16 -1.78 10.03 -39.51 -0.40 -2.18 16 22 C 0.09 1.17 7.30 -39.41 -0.29 0.88 16 23 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 24 C -0.14 -1.87 9.65 -39.51 -0.38 -2.25 16 25 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 30 H 0.06 0.78 7.37 -51.93 -0.38 0.40 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.13 1.79 7.51 -52.49 -0.39 1.39 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.48 7.95 -52.49 -0.42 1.07 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -30.53 306.74 -6.81 -37.34 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.37 Total: 0.69 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.05 Total: -11.57 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.63 Total: -24.47 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.65 Total: -20.59 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.53 -6.81 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744135760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.369 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds