Wall clock time and date at job start Mon Mar 30 2020 07:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47052 * 2 1 4 4 C 1.50696 * 109.46801 * 240.00417 * 2 1 3 5 5 H 1.08004 * 120.00205 * 239.99234 * 4 2 1 6 6 C 1.37884 * 120.00471 * 59.99838 * 4 2 1 7 7 N 1.31511 * 119.99623 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00225 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46738 * 90.00006 * 8 6 4 10 10 H 1.48501 * 109.47185 * 209.99945 * 8 6 4 11 11 H 1.48503 * 109.47310 * 330.00249 * 8 6 4 12 12 O 1.45192 * 109.47407 * 120.00328 * 2 1 3 13 13 C 1.34230 * 117.00018 * 270.00214 * 12 2 1 14 14 O 1.20826 * 120.00015 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00046 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47060 * 299.99765 * 15 13 12 17 17 C 1.53002 * 109.47419 * 59.99846 * 15 13 12 18 18 C 1.50703 * 109.47064 * 179.97438 * 15 13 12 19 19 C 1.38271 * 119.98518 * 299.72377 * 18 15 13 20 20 C 1.38227 * 120.04905 * 179.72780 * 19 18 15 21 21 C 1.38218 * 120.02416 * 0.54479 * 20 19 18 22 22 C 1.38445 * 119.97590 * 359.73120 * 21 20 19 23 23 F 1.35103 * 120.02505 * 180.02562 * 22 21 20 24 24 C 1.38175 * 119.98595 * 119.99723 * 18 15 13 25 25 H 1.08998 * 109.47158 * 59.99789 * 1 2 3 26 26 H 1.09004 * 109.47258 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46802 * 299.99450 * 1 2 3 28 28 H 0.96997 * 119.99950 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46986 * 300.00096 * 17 15 13 30 30 H 1.09002 * 109.47075 * 59.99368 * 17 15 13 31 31 H 1.08996 * 109.47407 * 180.02562 * 17 15 13 32 32 H 1.07995 * 119.97592 * 359.97438 * 19 18 15 33 33 H 1.07998 * 119.98822 * 180.27966 * 20 19 18 34 34 H 1.07996 * 120.01566 * 179.70776 * 21 20 19 35 35 H 1.07997 * 120.01235 * 0.02605 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3223 -1.1193 -4.0080 9 1 1.3445 -2.1614 -4.4124 10 1 2.4870 -0.1400 -5.1121 11 1 3.6307 -1.7564 -3.7121 12 8 2.0140 -0.6845 1.1854 13 6 2.2172 0.0639 2.2810 14 8 1.9982 1.2518 2.2504 15 6 2.7194 -0.5772 3.5490 16 1 2.0106 -1.3374 3.8772 17 6 4.0798 -1.2269 3.2879 18 6 2.8623 0.4730 4.6204 19 6 3.7182 1.5422 4.4303 20 6 3.8461 2.5091 5.4098 21 6 3.1267 2.4023 6.5851 22 6 2.2737 1.3292 6.7790 23 9 1.5697 1.2241 7.9273 24 6 2.1422 0.3641 5.7946 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7086 1.1614 -3.4843 29 1 3.9768 -1.9864 2.5128 30 1 4.7886 -0.4667 2.9596 31 1 4.4428 -1.6910 4.2049 32 1 4.2843 1.6239 3.5142 33 1 4.5115 3.3462 5.2583 34 1 3.2303 3.1554 7.3523 35 1 1.4774 -0.4737 5.9448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744135760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:18 Heat of formation + Delta-G solvation = -136.238817 kcal Electronic energy + Delta-G solvation = -19775.627948 eV Core-core repulsion = 16459.149022 eV Total energy + Delta-G solvation = -3316.478927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.89723 -41.63766 -39.95801 -37.57029 -35.47918 -35.09942 -31.81367 -31.58402 -30.32366 -27.46690 -26.13522 -24.25626 -23.76040 -22.54900 -20.99595 -18.94412 -18.43768 -18.18561 -17.57219 -17.18225 -16.93318 -16.65612 -16.58549 -16.22402 -15.32824 -14.93184 -14.58078 -14.51138 -14.07626 -13.88835 -13.66985 -13.30160 -13.13516 -13.05850 -12.91711 -12.79526 -12.70782 -12.41710 -12.36351 -12.15246 -11.88222 -11.57349 -11.20530 -10.98039 -10.59203 -9.98629 -9.65221 -8.28329 -6.45203 0.12048 0.21961 1.33735 1.42993 1.44791 1.55981 1.98531 2.40230 2.68486 3.02671 3.16449 3.46541 3.73403 3.97961 4.07152 4.12921 4.19027 4.22141 4.42823 4.52625 4.74888 4.77433 4.82967 4.85609 4.91266 5.05919 5.09980 5.15781 5.23895 5.35154 5.48945 5.50130 5.62836 5.90106 5.92748 6.09784 6.60508 6.97423 7.27042 8.79367 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038104 B = 0.004099 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.647125 B = 6829.203408 C = 6934.142219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.547 4.547 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.982 3.018 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.263 1.263 12 O -0.358 6.358 13 C 0.449 3.551 14 O -0.545 6.545 15 C -0.038 4.038 16 H 0.137 0.863 17 C -0.135 4.135 18 C -0.055 4.055 19 C -0.110 4.110 20 C -0.092 4.092 21 C -0.149 4.149 22 C 0.079 3.921 23 F -0.145 7.145 24 C -0.147 4.147 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.021 0.979 28 H 0.270 0.730 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -1.810 16.164 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.584 4.584 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.805 3.195 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.188 1.188 12 O -0.275 6.275 13 C 0.294 3.706 14 O -0.436 6.436 15 C -0.057 4.057 16 H 0.155 0.845 17 C -0.192 4.192 18 C -0.055 4.055 19 C -0.128 4.128 20 C -0.109 4.109 21 C -0.168 4.168 22 C 0.060 3.940 23 F -0.124 7.124 24 C -0.166 4.166 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.136 0.864 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.895 -1.352 16.016 17.120 hybrid contribution -0.327 0.145 -0.838 0.912 sum 5.568 -1.206 15.177 16.211 Atomic orbital electron populations 1.21993 0.97013 1.00375 1.00691 1.20315 0.91826 0.92089 0.79284 0.97513 1.21304 1.33351 1.13896 0.89855 0.91238 1.25831 0.94717 0.95620 1.02172 1.70021 1.36677 1.23725 1.25186 0.85187 0.79086 0.78078 0.77100 1.19280 1.20431 1.18763 1.86464 1.76061 1.43614 1.21323 1.24270 0.73969 0.85832 0.86559 1.90600 1.49588 1.18358 1.85014 1.20075 1.02119 0.97017 0.86520 0.84524 1.21789 0.92165 1.00941 1.04321 1.19227 0.96680 0.95966 0.93615 1.21194 0.98297 0.94139 0.99198 1.21262 0.98872 0.98841 0.91955 1.21432 0.97270 0.98112 0.99967 1.17768 0.95457 0.97550 0.83227 1.91479 1.77203 1.96191 1.47508 1.21127 1.01696 1.00610 0.93141 0.90159 0.93491 0.95997 0.92048 0.90829 0.92427 0.88058 0.86382 0.82437 0.82385 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.40 9.33 71.98 0.67 -6.73 16 2 C 0.22 11.92 2.56 29.85 0.08 12.00 16 3 H 0.01 0.43 7.16 -2.39 -0.02 0.42 16 4 C -0.55 -30.68 8.90 25.60 0.23 -30.45 16 5 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 6 C 0.02 0.89 5.30 84.66 0.45 1.33 16 7 N -0.92 -52.60 11.32 21.45 0.24 -52.36 16 8 Si 0.98 42.36 29.54 68.60 2.03 44.38 16 9 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 12 O -0.36 -16.84 9.77 -51.41 -0.50 -17.34 16 13 C 0.45 18.36 7.10 71.24 0.51 18.87 16 14 O -0.54 -25.75 14.35 21.97 0.32 -25.43 16 15 C -0.04 -1.08 3.01 -12.28 -0.04 -1.11 16 16 H 0.14 3.12 7.88 -2.39 -0.02 3.11 16 17 C -0.14 -3.12 8.93 71.98 0.64 -2.47 16 18 C -0.05 -1.47 4.39 -19.87 -0.09 -1.55 16 19 C -0.11 -2.94 7.94 22.27 0.18 -2.76 16 20 C -0.09 -1.98 10.04 22.26 0.22 -1.75 16 21 C -0.15 -3.09 10.03 22.31 0.22 -2.86 16 22 C 0.08 1.87 7.30 22.38 0.16 2.03 16 23 F -0.15 -3.47 17.27 44.97 0.78 -2.70 16 24 C -0.15 -3.54 9.65 22.31 0.22 -3.33 16 25 H 0.08 4.47 6.07 -2.39 -0.01 4.45 16 26 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.07 1.80 8.11 -2.39 -0.02 1.78 16 30 H 0.06 1.39 7.37 -2.39 -0.02 1.37 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 3.34 7.51 -2.91 -0.02 3.31 16 33 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.15 3.00 7.95 -2.91 -0.02 2.98 16 Total: -1.00 -66.59 306.74 7.40 -59.19 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.09 Total: 13.05 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 3.45 Total: -18.79 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.24 Total: -52.36 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.19 Total: -42.77 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -66.59 7.40 -59.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744135760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.050 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds