Wall clock time and date at job start Mon Mar 30 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 C 1.50701 * 109.47180 * 59.99852 * 4 2 1 7 7 O 1.21208 * 119.99902 * 120.00495 * 6 4 2 8 8 O 1.34310 * 119.99641 * 300.00185 * 6 4 2 9 9 C 1.34926 * 116.99653 * 180.02562 * 8 6 4 10 10 H 1.07999 * 119.99972 * 359.97438 * 9 8 6 11 11 C 1.38752 * 119.99976 * 179.97438 * 9 8 6 12 12 N 1.31438 * 119.99951 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00280 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46883 * 59.99509 * 13 11 9 15 15 H 1.48495 * 109.47843 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46998 * 300.00127 * 13 11 9 17 17 C 1.50703 * 109.47126 * 179.97438 * 4 2 1 18 18 C 1.38237 * 119.97409 * 299.72584 * 17 4 2 19 19 C 1.38202 * 120.02572 * 179.72555 * 18 17 4 20 20 C 1.38458 * 119.97231 * 0.52784 * 19 18 17 21 21 F 1.35103 * 120.02914 * 179.72800 * 20 19 18 22 22 C 1.38459 * 119.94853 * 359.74106 * 20 19 18 23 23 C 1.38199 * 119.97436 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 0.97002 * 120.00293 * 179.97438 * 12 11 9 32 32 H 1.08006 * 119.99119 * 359.97438 * 18 17 4 33 33 H 1.08002 * 120.01544 * 180.29118 * 19 18 17 34 34 H 1.08006 * 120.01488 * 179.97438 * 22 20 19 35 35 H 1.08004 * 119.98843 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 1.5376 -2.1422 1.2492 7 8 2.3253 -3.0634 1.2492 8 8 0.2171 -2.3875 1.2492 9 6 -0.1655 -3.6814 1.2497 10 1 0.5783 -4.4644 1.2496 11 6 -1.5145 -4.0059 1.2502 12 7 -2.4197 -3.0529 1.2507 13 14 -2.0442 -5.7972 1.2501 14 1 -1.5126 -6.4706 2.4623 15 1 -3.5272 -5.8750 1.2514 16 1 -1.5138 -6.4702 0.0373 17 6 3.5470 -0.7219 1.2489 18 6 4.2372 -1.3259 0.2147 19 6 5.6192 -1.3221 0.2104 20 6 6.3125 -0.7225 1.2482 21 9 7.6635 -0.7230 1.2479 22 6 5.6201 -0.1227 2.2864 23 6 4.2381 -0.1236 2.2860 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 -3.3628 -3.2798 1.2507 32 1 3.6963 -1.7976 -0.5925 33 1 6.1583 -1.7900 -0.6001 34 1 6.1598 0.3450 3.0966 35 1 3.6978 0.3439 3.0959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756376046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:38 Heat of formation + Delta-G solvation = -113.764592 kcal Electronic energy + Delta-G solvation = -20252.525090 eV Core-core repulsion = 16937.020718 eV Total energy + Delta-G solvation = -3315.504371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.77571 -39.97839 -38.41441 -35.75712 -35.05787 -32.12706 -31.02525 -30.77906 -27.48574 -26.31204 -25.07248 -22.99893 -21.88109 -20.77833 -19.25186 -17.76109 -17.54137 -16.83919 -15.87848 -15.60046 -15.45830 -14.90809 -14.66928 -14.34809 -14.11098 -13.45624 -13.36759 -13.22674 -12.91478 -12.49750 -12.04251 -11.91493 -11.81884 -11.67620 -11.52043 -11.19386 -10.90818 -10.76344 -10.52387 -10.41732 -10.23904 -10.13592 -9.64810 -9.05053 -8.83960 -8.56544 -8.35684 -6.41862 -4.09107 1.29212 1.42274 3.11991 3.18622 3.21860 3.50304 3.68141 3.99544 4.39064 4.55401 4.83989 4.88712 5.00123 5.07731 5.23334 5.33092 5.46962 5.50362 5.65400 5.79881 5.93982 6.03172 6.09187 6.14253 6.24242 6.27267 6.32474 6.41213 6.51250 6.64071 6.70001 6.83899 7.05549 7.34647 7.42925 7.95717 8.70835 9.07860 9.84776 10.75477 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.005359 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.987354 B = 5223.891861 C = 5950.742525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.080 4.080 3 C -0.143 4.143 4 C -0.032 4.032 5 H 0.102 0.898 6 C 0.402 3.598 7 O -0.548 6.548 8 O -0.203 6.203 9 C -0.386 4.386 10 H 0.093 0.907 11 C 0.045 3.955 12 N -0.864 5.864 13 Si 0.940 3.060 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.271 1.271 17 C -0.061 4.061 18 C -0.052 4.052 19 C -0.155 4.155 20 C 0.087 3.913 21 F -0.147 7.147 22 C -0.158 4.158 23 C -0.085 4.085 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.269 0.731 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 8.319 -1.264 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.099 4.099 3 C -0.201 4.201 4 C -0.051 4.051 5 H 0.120 0.880 6 C 0.248 3.752 7 O -0.445 6.445 8 O -0.110 6.110 9 C -0.462 4.462 10 H 0.111 0.889 11 C -0.159 4.159 12 N -0.500 5.500 13 Si 0.765 3.235 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.196 1.196 17 C -0.061 4.061 18 C -0.071 4.071 19 C -0.174 4.174 20 C 0.068 3.932 21 F -0.125 7.125 22 C -0.177 4.177 23 C -0.103 4.103 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.512 8.099 -1.262 12.556 hybrid contribution -0.013 -0.939 0.112 0.945 sum 9.499 7.161 -1.150 11.951 Atomic orbital electron populations 1.22116 0.92854 1.06042 1.00641 1.21055 0.97624 0.95393 0.95806 1.21851 1.00716 0.95744 1.01762 1.19931 0.90679 0.92972 1.01508 0.87953 1.22907 0.83031 0.90503 0.78797 1.90578 1.57027 1.46439 1.50466 1.83941 1.21475 1.30315 1.75302 1.21182 0.92044 0.80425 1.52533 0.88905 1.25257 0.94515 0.99921 0.96238 1.69963 1.01232 1.32324 1.46530 0.85798 0.77547 0.80869 0.79297 1.19599 1.20427 1.19575 1.19482 0.94354 0.97576 0.94701 1.20842 0.92646 0.95313 0.98251 1.21073 0.94914 1.02454 0.98985 1.17688 0.76495 1.01830 0.97153 1.91462 1.29420 1.95008 1.96655 1.20987 0.94786 1.03091 0.98799 1.20873 0.93002 0.98735 0.97711 0.93598 0.92854 0.88059 0.91121 0.92588 0.92831 0.92621 0.92080 0.85124 0.85052 0.85071 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 8.67 37.16 0.32 -2.52 16 2 C -0.08 -1.27 2.32 -90.62 -0.21 -1.48 16 3 C -0.14 -1.80 8.95 37.15 0.33 -1.47 16 4 C -0.03 -0.56 2.10 -92.92 -0.19 -0.75 16 5 H 0.10 1.67 7.88 -51.93 -0.41 1.26 16 6 C 0.40 9.44 7.00 36.01 0.25 9.69 16 7 O -0.55 -14.21 14.32 -19.05 -0.27 -14.48 16 8 O -0.20 -5.43 6.66 -20.72 -0.14 -5.57 16 9 C -0.39 -10.98 9.65 30.92 0.30 -10.68 16 10 H 0.09 2.70 6.86 -52.49 -0.36 2.34 16 11 C 0.04 1.22 5.49 -17.53 -0.10 1.12 16 12 N -0.86 -24.20 13.67 55.48 0.76 -23.44 16 13 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 C -0.06 -0.98 3.14 -104.62 -0.33 -1.31 16 18 C -0.05 -0.84 7.92 -39.59 -0.31 -1.15 16 19 C -0.16 -2.24 10.03 -39.51 -0.40 -2.64 16 20 C 0.09 1.25 7.30 -39.42 -0.29 0.96 16 21 F -0.15 -2.07 17.27 2.25 0.04 -2.03 16 22 C -0.16 -2.08 10.03 -39.51 -0.40 -2.48 16 23 C -0.09 -1.18 9.67 -39.59 -0.38 -1.56 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.10 2.28 5.32 -51.93 -0.28 2.00 16 27 H 0.07 1.13 7.40 -51.93 -0.38 0.75 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.13 2.15 7.51 -52.48 -0.39 1.75 16 33 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.13 1.52 7.94 -52.48 -0.42 1.10 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -30.65 302.17 -5.77 -36.43 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.29 Total: 2.91 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.40 Total: -14.26 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.76 Total: -23.44 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.41 Total: -20.05 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.65 -5.77 -36.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756376046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.339 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds