Wall clock time and date at job start Mon Mar 30 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 C 1.50701 * 109.47180 * 59.99852 * 4 2 1 7 7 O 1.21208 * 119.99902 * 120.00495 * 6 4 2 8 8 O 1.34310 * 119.99641 * 300.00185 * 6 4 2 9 9 C 1.34926 * 116.99653 * 180.02562 * 8 6 4 10 10 H 1.07999 * 119.99972 * 359.97438 * 9 8 6 11 11 C 1.38752 * 119.99976 * 179.97438 * 9 8 6 12 12 N 1.31438 * 119.99951 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00280 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46883 * 59.99509 * 13 11 9 15 15 H 1.48495 * 109.47843 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46998 * 300.00127 * 13 11 9 17 17 C 1.50703 * 109.47126 * 179.97438 * 4 2 1 18 18 C 1.38237 * 119.97409 * 299.72584 * 17 4 2 19 19 C 1.38202 * 120.02572 * 179.72555 * 18 17 4 20 20 C 1.38458 * 119.97231 * 0.52784 * 19 18 17 21 21 F 1.35103 * 120.02914 * 179.72800 * 20 19 18 22 22 C 1.38459 * 119.94853 * 359.74106 * 20 19 18 23 23 C 1.38199 * 119.97436 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 0.97002 * 120.00293 * 179.97438 * 12 11 9 32 32 H 1.08006 * 119.99119 * 359.97438 * 18 17 4 33 33 H 1.08002 * 120.01544 * 180.29118 * 19 18 17 34 34 H 1.08006 * 120.01488 * 179.97438 * 22 20 19 35 35 H 1.08004 * 119.98843 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 6 1.5376 -2.1422 1.2492 7 8 2.3253 -3.0634 1.2492 8 8 0.2171 -2.3875 1.2492 9 6 -0.1655 -3.6814 1.2497 10 1 0.5783 -4.4644 1.2496 11 6 -1.5145 -4.0059 1.2502 12 7 -2.4197 -3.0529 1.2507 13 14 -2.0442 -5.7972 1.2501 14 1 -1.5126 -6.4706 2.4623 15 1 -3.5272 -5.8750 1.2514 16 1 -1.5138 -6.4702 0.0373 17 6 3.5470 -0.7219 1.2489 18 6 4.2372 -1.3259 0.2147 19 6 5.6192 -1.3221 0.2104 20 6 6.3125 -0.7225 1.2482 21 9 7.6635 -0.7230 1.2479 22 6 5.6201 -0.1227 2.2864 23 6 4.2381 -0.1236 2.2860 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 -3.3628 -3.2798 1.2507 32 1 3.6963 -1.7976 -0.5925 33 1 6.1583 -1.7900 -0.6001 34 1 6.1598 0.3450 3.0966 35 1 3.6978 0.3439 3.0959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756376046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:37 Heat of formation + Delta-G solvation = -129.841393 kcal Electronic energy + Delta-G solvation = -20253.222232 eV Core-core repulsion = 16937.020718 eV Total energy + Delta-G solvation = -3316.201514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.88357 -41.56431 -39.92633 -37.27372 -36.85365 -34.21614 -32.17633 -31.98739 -28.91348 -27.63443 -26.99807 -24.12954 -23.25189 -22.26853 -20.72336 -19.82535 -18.66750 -18.53391 -17.26484 -16.90550 -16.59790 -16.59512 -16.44818 -16.10710 -15.30403 -14.79042 -14.66792 -14.47437 -14.35312 -13.84895 -13.58238 -13.47479 -13.16439 -13.07310 -12.93176 -12.72148 -12.46955 -12.18436 -12.13524 -11.99734 -11.69777 -11.54276 -11.46316 -10.87042 -10.62625 -10.01848 -9.53925 -8.48790 -6.26569 0.12301 0.31235 1.33204 1.35304 1.49089 1.68031 2.12004 2.51411 2.95007 3.03154 3.27526 3.53078 3.72547 3.90394 3.99758 4.06610 4.32414 4.37426 4.46304 4.56733 4.69054 4.77780 4.92695 4.97724 4.99596 5.09832 5.14445 5.14865 5.23939 5.27234 5.28990 5.44096 5.60183 5.77248 5.91574 5.93203 6.73256 6.97387 7.83892 8.70221 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.005359 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.987354 B = 5223.891861 C = 5950.742525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.022 4.022 5 H 0.119 0.881 6 C 0.398 3.602 7 O -0.578 6.578 8 O -0.222 6.222 9 C -0.422 4.422 10 H 0.075 0.925 11 C 0.003 3.997 12 N -0.894 5.894 13 Si 1.007 2.993 14 H -0.266 1.266 15 H -0.261 1.261 16 H -0.265 1.265 17 C -0.078 4.078 18 C -0.070 4.070 19 C -0.159 4.159 20 C 0.082 3.918 21 F -0.145 7.145 22 C -0.149 4.149 23 C -0.082 4.082 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.277 0.723 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.314 9.446 -0.658 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.093 4.093 3 C -0.190 4.190 4 C -0.041 4.041 5 H 0.137 0.863 6 C 0.246 3.754 7 O -0.475 6.475 8 O -0.129 6.129 9 C -0.498 4.498 10 H 0.093 0.907 11 C -0.198 4.198 12 N -0.531 5.531 13 Si 0.827 3.173 14 H -0.191 1.191 15 H -0.185 1.185 16 H -0.190 1.190 17 C -0.078 4.078 18 C -0.088 4.088 19 C -0.177 4.177 20 C 0.063 3.937 21 F -0.124 7.124 22 C -0.167 4.167 23 C -0.099 4.099 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.164 0.836 34 H 0.180 0.820 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.313 9.249 -0.660 13.869 hybrid contribution -0.159 -1.248 -0.084 1.261 sum 10.154 8.001 -0.744 12.949 Atomic orbital electron populations 1.22002 0.94409 1.02982 1.01712 1.21026 0.96088 0.97627 0.94540 1.21764 1.01130 0.92885 1.03203 1.20023 0.92029 0.88965 1.03102 0.86282 1.24192 0.81880 0.92905 0.76438 1.90540 1.57402 1.48246 1.51346 1.84017 1.23245 1.29450 1.76235 1.21303 0.92613 0.81058 1.54857 0.90714 1.26293 0.93877 1.04652 0.94964 1.70045 1.01766 1.34547 1.46716 0.84829 0.77967 0.75036 0.79461 1.19068 1.18461 1.19023 1.19457 0.93200 0.99238 0.95918 1.20795 0.93429 0.96235 0.98349 1.21199 0.94340 1.02424 0.99758 1.17844 0.76622 1.01833 0.97393 1.91469 1.29300 1.94988 1.96654 1.21313 0.94542 1.01928 0.98943 1.21148 0.93461 0.97975 0.97363 0.91728 0.92559 0.92993 0.92032 0.91233 0.92037 0.91130 0.91394 0.86794 0.83630 0.81995 0.82441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 8.67 71.98 0.62 -4.89 16 2 C -0.07 -2.31 2.32 -10.79 -0.03 -2.33 16 3 C -0.13 -2.98 8.95 71.98 0.64 -2.34 16 4 C -0.02 -0.78 2.10 -12.28 -0.03 -0.80 16 5 H 0.12 3.74 7.88 -2.39 -0.02 3.72 16 6 C 0.40 19.38 7.00 71.24 0.50 19.88 16 7 O -0.58 -31.11 14.32 20.78 0.30 -30.81 16 8 O -0.22 -12.39 6.66 14.82 0.10 -12.29 16 9 C -0.42 -25.07 9.65 67.94 0.66 -24.42 16 10 H 0.08 4.58 6.86 -2.91 -0.02 4.56 16 11 C 0.00 0.18 5.49 84.87 0.47 0.65 16 12 N -0.89 -51.06 13.67 21.62 0.30 -50.77 16 13 Si 1.01 43.18 29.55 68.60 2.03 45.21 16 14 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 15 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 C -0.08 -2.42 3.14 -19.86 -0.06 -2.48 16 18 C -0.07 -2.23 7.92 22.26 0.18 -2.05 16 19 C -0.16 -4.42 10.03 22.31 0.22 -4.19 16 20 C 0.08 2.16 7.30 22.37 0.16 2.32 16 21 F -0.15 -3.77 17.27 44.97 0.78 -2.99 16 22 C -0.15 -3.44 10.03 22.31 0.22 -3.21 16 23 C -0.08 -2.04 9.67 22.26 0.22 -1.82 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 2.43 5.32 -2.38 -0.01 2.42 16 27 H 0.06 2.01 7.40 -2.39 -0.02 1.99 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.31 7.22 -2.39 -0.02 1.30 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.11 3.92 7.51 -2.91 -0.02 3.90 16 33 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 34 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.16 3.04 7.94 -2.91 -0.02 3.02 16 Total: -1.00 -68.67 302.17 8.37 -60.30 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.09 Total: 17.06 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 3.78 Total: -25.71 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.30 Total: -50.77 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: 0.40 Total: -43.10 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -2.99 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.67 8.37 -60.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756376046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.539 kcal (2) G-P(sol) polarization free energy of solvation -68.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds