Wall clock time and date at job start Mon Mar 30 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47176 * 2 1 4 4 C 1.52998 * 109.47273 * 120.00072 * 2 1 3 5 5 H 1.08998 * 109.47098 * 299.99874 * 4 2 1 6 6 C 1.50707 * 109.47458 * 180.02562 * 4 2 1 7 7 O 1.21209 * 120.00189 * 240.00273 * 6 4 2 8 8 O 1.34314 * 120.00092 * 59.99480 * 6 4 2 9 9 C 1.34913 * 116.99996 * 180.02562 * 8 6 4 10 10 H 1.08002 * 119.99943 * 359.97438 * 9 8 6 11 11 C 1.38755 * 120.00086 * 180.02562 * 9 8 6 12 12 N 1.31438 * 120.00102 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99896 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46847 * 89.99765 * 13 11 9 15 15 H 1.48500 * 109.47012 * 209.99807 * 13 11 9 16 16 H 1.48500 * 109.46913 * 329.99830 * 13 11 9 17 17 C 1.50698 * 109.47233 * 60.00056 * 4 2 1 18 18 C 1.38244 * 119.97167 * 239.99979 * 17 4 2 19 19 C 1.38205 * 120.02298 * 180.02562 * 18 17 4 20 20 C 1.38459 * 119.97412 * 0.24026 * 19 18 17 21 21 F 1.35099 * 120.02759 * 179.72396 * 20 19 18 22 22 C 1.38466 * 119.94836 * 359.48301 * 20 19 18 23 23 C 1.38196 * 119.97140 * 0.53984 * 22 20 19 24 24 H 1.08998 * 109.46956 * 299.99967 * 1 2 3 25 25 H 1.09004 * 109.47140 * 59.99893 * 1 2 3 26 26 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47616 * 240.00125 * 2 1 3 28 28 H 1.09001 * 109.47036 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47174 * 300.00086 * 3 2 1 30 30 H 1.08998 * 109.47151 * 60.00152 * 3 2 1 31 31 H 0.97000 * 120.00251 * 180.02562 * 12 11 9 32 32 H 1.07999 * 119.98898 * 0.02589 * 18 17 4 33 33 H 1.08002 * 120.00949 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00962 * 180.25357 * 22 20 19 35 35 H 1.08000 * 119.98525 * 179.74601 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5471 -0.7207 1.2496 7 8 4.1535 -1.7702 1.2495 8 8 4.2182 0.4427 1.2498 9 6 5.5655 0.3725 1.2496 10 1 6.0562 -0.5896 1.2496 11 6 6.3209 1.5365 1.2504 12 7 7.6335 1.4681 1.2506 13 14 5.4723 3.2006 1.2510 14 1 5.2470 3.6408 2.6512 15 1 6.3278 4.1928 0.5517 16 1 4.1674 3.0911 0.5505 17 6 1.5377 -2.1421 1.2492 18 6 0.7430 -2.5936 2.2864 19 6 0.2822 -3.8966 2.2877 20 6 0.6209 -4.7512 1.2523 21 9 0.1757 -6.0267 1.2554 22 6 1.4122 -4.2961 0.2112 23 6 1.8722 -2.9929 0.2122 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 8.1616 2.2818 1.2516 32 1 0.4821 -1.9280 3.0958 33 1 -0.3383 -4.2493 3.0983 34 1 1.6736 -4.9606 -0.5990 35 1 2.4928 -2.6389 -0.5977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756376054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:40 Heat of formation + Delta-G solvation = -110.076270 kcal Electronic energy + Delta-G solvation = -20329.079510 eV Core-core repulsion = 17013.735077 eV Total energy + Delta-G solvation = -3315.344434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.82275 -40.13478 -38.57630 -35.92446 -35.26501 -32.29882 -31.10104 -30.88974 -27.67879 -26.56189 -25.11968 -23.07242 -21.88346 -20.81534 -19.31133 -18.01803 -17.60046 -16.99910 -15.98255 -15.68786 -15.50445 -15.12129 -14.98508 -14.24619 -14.04431 -13.60343 -13.44629 -13.27678 -12.88728 -12.49571 -12.45639 -12.13941 -12.02513 -11.96435 -11.69985 -11.30712 -10.98827 -10.76553 -10.67532 -10.43533 -10.29685 -10.25391 -9.60390 -9.17488 -8.92873 -8.66674 -8.43208 -6.37796 -4.13590 1.22077 1.36010 3.11363 3.22986 3.32027 3.37131 3.61412 4.18150 4.23418 4.33639 4.69739 4.79778 4.94070 5.00192 5.12424 5.17953 5.38641 5.41416 5.49857 5.66235 5.79463 5.89309 5.95184 6.04405 6.07911 6.15067 6.19003 6.28964 6.31346 6.38873 6.48879 6.69507 6.96341 7.00071 7.72480 8.03752 8.61363 9.00856 9.67093 10.70898 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028640 B = 0.005581 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.420619 B = 5016.036883 C = 5626.061439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.166 4.166 4 C -0.032 4.032 5 H 0.104 0.896 6 C 0.414 3.586 7 O -0.531 6.531 8 O -0.242 6.242 9 C -0.384 4.384 10 H 0.108 0.892 11 C 0.067 3.933 12 N -0.876 5.876 13 Si 0.895 3.105 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.249 1.249 17 C -0.064 4.064 18 C -0.084 4.084 19 C -0.158 4.158 20 C 0.090 3.910 21 F -0.146 7.146 22 C -0.155 4.155 23 C -0.053 4.053 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.279 0.721 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 -3.643 -1.345 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.223 4.223 4 C -0.051 4.051 5 H 0.122 0.878 6 C 0.259 3.741 7 O -0.425 6.425 8 O -0.151 6.151 9 C -0.459 4.459 10 H 0.126 0.874 11 C -0.137 4.137 12 N -0.515 5.515 13 Si 0.721 3.279 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.172 1.172 17 C -0.065 4.065 18 C -0.102 4.102 19 C -0.176 4.176 20 C 0.071 3.929 21 F -0.124 7.124 22 C -0.173 4.173 23 C -0.071 4.071 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.149 -3.836 -1.349 16.653 hybrid contribution -0.074 0.462 0.145 0.490 sum -16.223 -3.374 -1.204 16.613 Atomic orbital electron populations 1.21848 0.94690 1.01740 1.01817 1.21071 0.95769 0.97091 0.96109 1.22270 1.04941 0.94057 1.01036 1.19948 0.90421 0.93243 1.01518 0.87762 1.22689 0.89648 0.83043 0.78747 1.90625 1.70049 1.32881 1.48931 1.83576 1.22287 1.32262 1.76988 1.20674 0.76219 0.97096 1.51929 0.87427 1.24534 0.94690 0.98825 0.95632 1.69604 1.04145 1.29956 1.47791 0.86426 0.80488 0.81956 0.79041 1.20024 1.20994 1.17249 1.19423 0.97312 0.94832 0.94906 1.20859 0.96802 0.94905 0.97626 1.20994 1.03663 0.94124 0.98862 1.17701 0.98933 0.79213 0.97074 1.91468 1.87818 1.36522 1.96639 1.21085 1.00051 0.97238 0.98958 1.20850 0.95941 0.92043 0.98224 0.92552 0.92522 0.92582 0.90706 0.88759 0.93072 0.92798 0.91093 0.85080 0.85002 0.84945 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.95 37.16 0.33 -1.27 16 2 C -0.08 -1.17 2.32 -90.62 -0.21 -1.38 16 3 C -0.17 -2.60 8.47 37.16 0.31 -2.28 16 4 C -0.03 -0.52 2.09 -92.92 -0.19 -0.71 16 5 H 0.10 1.51 7.87 -51.93 -0.41 1.10 16 6 C 0.41 9.23 7.01 36.01 0.25 9.48 16 7 O -0.53 -13.55 14.35 -19.05 -0.27 -13.82 16 8 O -0.24 -5.98 5.51 -20.69 -0.11 -6.10 16 9 C -0.38 -11.01 10.10 30.92 0.31 -10.70 16 10 H 0.11 3.46 7.09 -52.49 -0.37 3.09 16 11 C 0.07 1.86 5.49 -17.53 -0.10 1.77 16 12 N -0.88 -25.62 13.96 55.48 0.77 -24.85 16 13 Si 0.90 20.46 28.50 -169.99 -4.84 15.61 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.25 -5.28 5.60 56.52 0.32 -4.96 16 17 C -0.06 -0.97 3.13 -104.62 -0.33 -1.30 16 18 C -0.08 -1.09 9.67 -39.59 -0.38 -1.47 16 19 C -0.16 -1.98 10.03 -39.51 -0.40 -2.37 16 20 C 0.09 1.23 7.30 -39.42 -0.29 0.95 16 21 F -0.15 -2.00 17.27 2.25 0.04 -1.96 16 22 C -0.15 -2.15 10.03 -39.51 -0.40 -2.54 16 23 C -0.05 -0.80 7.93 -39.59 -0.31 -1.12 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.61 7.22 -51.93 -0.37 0.24 16 27 H 0.07 1.09 7.39 -51.93 -0.38 0.71 16 28 H 0.09 1.84 3.91 -51.93 -0.20 1.63 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.13 1.39 7.94 -52.49 -0.42 0.97 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 2.05 7.51 -52.49 -0.39 1.66 16 LS Contribution 297.84 15.07 4.49 4.49 Total: -1.00 -31.17 297.84 -5.63 -36.81 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.31 Total: 2.79 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.39 Total: -12.97 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.77 Total: -24.85 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.39 Total: -19.92 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.84 Total: 15.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.17 -5.63 -36.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756376054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.268 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds