Wall clock time and date at job start Mon Mar 30 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47176 * 2 1 4 4 C 1.52998 * 109.47273 * 120.00072 * 2 1 3 5 5 H 1.08998 * 109.47098 * 299.99874 * 4 2 1 6 6 C 1.50707 * 109.47458 * 180.02562 * 4 2 1 7 7 O 1.21209 * 120.00189 * 240.00273 * 6 4 2 8 8 O 1.34314 * 120.00092 * 59.99480 * 6 4 2 9 9 C 1.34913 * 116.99996 * 180.02562 * 8 6 4 10 10 H 1.08002 * 119.99943 * 359.97438 * 9 8 6 11 11 C 1.38755 * 120.00086 * 180.02562 * 9 8 6 12 12 N 1.31438 * 120.00102 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99896 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46847 * 89.99765 * 13 11 9 15 15 H 1.48500 * 109.47012 * 209.99807 * 13 11 9 16 16 H 1.48500 * 109.46913 * 329.99830 * 13 11 9 17 17 C 1.50698 * 109.47233 * 60.00056 * 4 2 1 18 18 C 1.38244 * 119.97167 * 239.99979 * 17 4 2 19 19 C 1.38205 * 120.02298 * 180.02562 * 18 17 4 20 20 C 1.38459 * 119.97412 * 0.24026 * 19 18 17 21 21 F 1.35099 * 120.02759 * 179.72396 * 20 19 18 22 22 C 1.38466 * 119.94836 * 359.48301 * 20 19 18 23 23 C 1.38196 * 119.97140 * 0.53984 * 22 20 19 24 24 H 1.08998 * 109.46956 * 299.99967 * 1 2 3 25 25 H 1.09004 * 109.47140 * 59.99893 * 1 2 3 26 26 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47616 * 240.00125 * 2 1 3 28 28 H 1.09001 * 109.47036 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47174 * 300.00086 * 3 2 1 30 30 H 1.08998 * 109.47151 * 60.00152 * 3 2 1 31 31 H 0.97000 * 120.00251 * 180.02562 * 12 11 9 32 32 H 1.07999 * 119.98898 * 0.02589 * 18 17 4 33 33 H 1.08002 * 120.00949 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00962 * 180.25357 * 22 20 19 35 35 H 1.08000 * 119.98525 * 179.74601 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5471 -0.7207 1.2496 7 8 4.1535 -1.7702 1.2495 8 8 4.2182 0.4427 1.2498 9 6 5.5655 0.3725 1.2496 10 1 6.0562 -0.5896 1.2496 11 6 6.3209 1.5365 1.2504 12 7 7.6335 1.4681 1.2506 13 14 5.4723 3.2006 1.2510 14 1 5.2470 3.6408 2.6512 15 1 6.3278 4.1928 0.5517 16 1 4.1674 3.0911 0.5505 17 6 1.5377 -2.1421 1.2492 18 6 0.7430 -2.5936 2.2864 19 6 0.2822 -3.8966 2.2877 20 6 0.6209 -4.7512 1.2523 21 9 0.1757 -6.0267 1.2554 22 6 1.4122 -4.2961 0.2112 23 6 1.8722 -2.9929 0.2122 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 8.1616 2.2818 1.2516 32 1 0.4821 -1.9280 3.0958 33 1 -0.3383 -4.2493 3.0983 34 1 1.6736 -4.9606 -0.5990 35 1 2.4928 -2.6389 -0.5977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756376054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:40 Heat of formation + Delta-G solvation = -127.468205 kcal Electronic energy + Delta-G solvation = -20329.833681 eV Core-core repulsion = 17013.735077 eV Total energy + Delta-G solvation = -3316.098604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.89478 -41.68643 -40.00553 -37.40139 -36.93218 -34.44288 -32.19227 -32.00323 -29.06310 -27.70406 -26.99104 -24.14375 -23.16133 -22.21754 -20.75711 -20.08894 -18.70061 -18.61836 -17.33740 -16.97783 -16.71906 -16.65302 -16.55396 -15.85458 -15.32516 -14.89477 -14.54051 -14.49022 -14.41096 -14.25467 -13.74534 -13.57311 -13.22869 -13.10562 -12.93463 -12.72701 -12.38898 -12.28842 -12.05592 -11.99769 -11.69365 -11.54531 -11.44040 -10.95611 -10.73750 -10.02644 -9.55160 -8.51402 -6.37293 0.10665 0.30566 1.32291 1.37195 1.55969 1.61174 2.27599 2.33237 2.78111 2.95672 3.27036 3.49387 3.69712 3.88445 3.98573 4.05163 4.31514 4.35913 4.38480 4.49445 4.58117 4.76451 4.92167 4.97174 4.97548 5.09386 5.14544 5.15619 5.25740 5.28621 5.44756 5.52621 5.58620 5.64620 5.90728 5.96941 6.59183 6.87032 7.64351 8.61737 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028640 B = 0.005581 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.420619 B = 5016.036883 C = 5626.061439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.168 4.168 4 C -0.021 4.021 5 H 0.133 0.867 6 C 0.413 3.587 7 O -0.570 6.570 8 O -0.239 6.239 9 C -0.405 4.405 10 H 0.052 0.948 11 C 0.015 3.985 12 N -0.923 5.923 13 Si 0.971 3.029 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.223 1.223 17 C -0.082 4.082 18 C -0.078 4.078 19 C -0.150 4.150 20 C 0.082 3.918 21 F -0.146 7.146 22 C -0.161 4.161 23 C -0.071 4.071 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.287 0.713 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.143 0.857 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.012 -2.237 -0.590 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.225 4.225 4 C -0.040 4.040 5 H 0.151 0.849 6 C 0.260 3.740 7 O -0.465 6.465 8 O -0.148 6.148 9 C -0.481 4.481 10 H 0.070 0.930 11 C -0.184 4.184 12 N -0.564 5.564 13 Si 0.790 3.210 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.146 1.146 17 C -0.082 4.082 18 C -0.096 4.096 19 C -0.168 4.168 20 C 0.063 3.937 21 F -0.125 7.125 22 C -0.180 4.180 23 C -0.089 4.089 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.161 0.839 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.673 -2.458 -0.601 19.835 hybrid contribution 1.025 -0.177 -0.099 1.045 sum -18.647 -2.635 -0.700 18.846 Atomic orbital electron populations 1.21770 0.91416 1.02457 1.03420 1.21079 0.98261 0.95909 0.94462 1.22253 1.02201 0.95201 1.02838 1.20115 0.85042 0.95016 1.03855 0.84942 1.24202 0.92233 0.81806 0.75779 1.90608 1.71644 1.34178 1.50060 1.83645 1.19962 1.33275 1.77952 1.20302 0.78287 0.95446 1.54037 0.93044 1.25566 0.95257 1.03326 0.94231 1.69721 1.06117 1.31758 1.48756 0.85318 0.80330 0.75475 0.79857 1.18907 1.20079 1.14564 1.19468 0.98612 0.94220 0.95880 1.21178 0.95582 0.95526 0.97318 1.21338 1.03014 0.93575 0.98901 1.17883 0.98967 0.79442 0.97430 1.91468 1.87779 1.36596 1.96655 1.21202 1.00128 0.96915 0.99735 1.20818 0.96661 0.92998 0.98467 0.90797 0.91090 0.92310 0.91958 0.92803 0.91027 0.91327 0.90362 0.81944 0.81984 0.83880 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.95 71.98 0.64 -1.82 16 2 C -0.08 -2.08 2.32 -10.79 -0.03 -2.10 16 3 C -0.17 -4.81 8.47 71.98 0.61 -4.20 16 4 C -0.02 -0.66 2.09 -12.28 -0.03 -0.68 16 5 H 0.13 3.36 7.87 -2.39 -0.02 3.34 16 6 C 0.41 18.78 7.01 71.24 0.50 19.28 16 7 O -0.57 -30.52 14.35 20.78 0.30 -30.22 16 8 O -0.24 -12.04 5.51 14.91 0.08 -11.96 16 9 C -0.40 -24.40 10.10 67.94 0.69 -23.72 16 10 H 0.05 3.59 7.09 -2.91 -0.02 3.57 16 11 C 0.02 0.88 5.49 84.88 0.47 1.35 16 12 N -0.92 -56.01 13.96 21.62 0.30 -55.70 16 13 Si 0.97 41.91 28.50 68.60 1.96 43.86 16 14 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 15 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.22 -8.65 5.60 99.48 0.56 -8.09 16 17 C -0.08 -2.34 3.13 -19.86 -0.06 -2.40 16 18 C -0.08 -1.78 9.67 22.26 0.22 -1.56 16 19 C -0.15 -3.26 10.03 22.31 0.22 -3.04 16 20 C 0.08 2.09 7.30 22.38 0.16 2.26 16 21 F -0.15 -3.75 17.27 44.97 0.78 -2.97 16 22 C -0.16 -4.40 10.03 22.31 0.22 -4.18 16 23 C -0.07 -2.18 7.93 22.26 0.18 -2.00 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.07 7.22 -2.39 -0.02 1.06 16 27 H 0.06 1.79 7.39 -2.38 -0.02 1.77 16 28 H 0.05 2.02 3.91 -2.39 -0.01 2.01 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.29 15.76 8.31 -92.71 -0.77 14.99 16 32 H 0.16 2.63 7.94 -2.91 -0.02 2.60 16 33 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.11 3.78 7.51 -2.91 -0.02 3.75 16 Total: -1.00 -72.33 297.84 8.16 -64.18 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.95 Total: 15.62 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 3.79 Total: -22.81 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.30 Total: -55.70 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: 0.38 Total: -42.18 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.78 Total: -2.97 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.96 Total: 43.86 kcal Total: -72.33 8.16 -64.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756376054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.293 kcal (2) G-P(sol) polarization free energy of solvation -72.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds