Wall clock time and date at job start Mon Mar 30 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38367 * 119.85018 * 2 1 4 4 C 1.37921 * 120.17100 * 179.74175 * 3 2 1 5 5 C 1.39701 * 119.86888 * 0.51010 * 4 3 2 6 6 C 1.47496 * 120.15067 * 179.74782 * 5 4 3 7 7 N 1.29736 * 119.99974 * 359.71958 * 6 5 4 8 8 N 1.40105 * 119.99968 * 180.02562 * 7 6 5 9 9 C 1.46499 * 120.00063 * 180.02562 * 8 7 6 10 10 H 1.09008 * 109.47058 * 330.00507 * 9 8 7 11 11 C 1.52999 * 109.47276 * 89.99692 * 9 8 7 12 12 C 1.50699 * 109.47248 * 209.99951 * 9 8 7 13 13 H 1.08000 * 120.00005 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99921 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99976 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99793 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47039 * 90.00039 * 16 14 12 18 18 H 1.48503 * 109.47257 * 209.99917 * 16 14 12 19 19 H 1.48498 * 109.47398 * 330.00272 * 16 14 12 20 20 C 1.39647 * 119.70154 * 359.46903 * 5 4 3 21 21 C 1.38078 * 119.82445 * 0.27638 * 20 5 4 22 22 Cl 1.73599 * 119.93614 * 180.02562 * 21 20 5 23 23 H 1.08994 * 109.47738 * 270.02275 * 1 2 3 24 24 H 1.09001 * 109.47165 * 30.02671 * 1 2 3 25 25 H 1.09004 * 109.47184 * 150.02199 * 1 2 3 26 26 H 1.07998 * 119.91501 * 0.02562 * 3 2 1 27 27 H 1.08006 * 120.06679 * 180.25558 * 4 3 2 28 28 H 1.07999 * 119.99953 * 179.72660 * 6 5 4 29 29 H 0.96999 * 119.99953 * 0.02562 * 8 7 6 30 30 H 1.08996 * 109.47549 * 179.97438 * 11 9 8 31 31 H 1.08998 * 109.47074 * 300.00425 * 11 9 8 32 32 H 1.09007 * 109.46853 * 59.99785 * 11 9 8 33 33 H 0.97007 * 119.99893 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.08823 * 180.25380 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5749 1.2078 0.0054 5 6 4.2774 0.0003 0.0000 6 6 5.7524 0.0014 0.0001 7 7 6.4002 1.1254 -0.0003 8 7 7.8013 1.1264 -0.0008 9 6 8.5329 2.3956 -0.0008 10 1 7.9430 3.1550 -0.5142 11 6 8.7880 2.8372 1.4417 12 6 9.8496 2.2165 -0.7116 13 1 10.1147 1.2536 -1.1227 14 6 10.7153 3.2822 -0.8381 15 7 10.3922 4.4547 -0.3379 16 14 12.3476 3.0600 -1.7186 17 1 12.1736 3.3500 -3.1646 18 1 13.3509 3.9920 -1.1441 19 1 12.8162 1.6613 -1.5472 20 6 3.5769 -1.2077 0.0005 21 6 2.1962 -1.2009 0.0005 22 17 1.3224 -2.7010 0.0018 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6519 2.1332 0.0004 27 1 4.1107 2.1456 0.0095 28 1 6.2930 -0.9336 0.0005 29 1 8.2869 0.2867 -0.0011 30 1 9.3327 3.7813 1.4418 31 1 7.8357 2.9667 1.9559 32 1 9.3778 2.0778 1.9553 33 1 11.0011 5.2046 -0.4272 34 1 4.1137 -2.1448 0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766454456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:33 Heat of formation + Delta-G solvation = 45.444096 kcal Electronic energy + Delta-G solvation = -16650.933161 eV Core-core repulsion = 13802.961723 eV Total energy + Delta-G solvation = -2847.971438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38210 -36.75718 -36.27292 -34.33825 -32.80639 -31.08227 -30.64410 -28.20154 -26.14986 -25.24058 -22.78140 -22.34147 -20.50288 -19.99730 -17.22429 -16.37187 -15.99119 -15.27304 -15.04036 -14.83713 -14.22169 -13.99104 -13.63470 -13.06360 -12.80686 -12.59272 -12.42762 -12.34712 -11.77739 -11.65096 -11.33790 -11.22054 -11.07995 -10.90607 -10.79076 -10.58179 -10.29387 -10.24478 -9.64024 -9.11541 -8.86184 -8.66858 -8.51413 -6.88719 -6.19003 -4.27655 1.01049 1.28814 2.09355 2.86495 3.21331 3.27848 3.29943 3.69607 3.93458 4.31990 4.74403 4.77645 5.09660 5.13614 5.15469 5.36907 5.48643 5.61280 5.61841 5.75213 5.94083 6.07280 6.18293 6.42121 6.57694 6.67893 6.86356 6.92158 6.93608 7.08354 7.51267 7.70622 7.79080 8.07209 8.22265 8.79105 9.20801 9.39414 10.86925 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.042829 B = 0.003137 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.600159 B = 8923.329557 C = 9263.450700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 C -0.107 4.107 4 C -0.093 4.093 5 C 0.005 3.995 6 C -0.020 4.020 7 N -0.187 5.187 8 N -0.618 5.618 9 C 0.296 3.704 10 H 0.043 0.957 11 C -0.151 4.151 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.274 1.274 20 C -0.104 4.104 21 C -0.034 4.034 22 Cl -0.079 7.079 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.104 0.896 29 H 0.370 0.630 30 H 0.091 0.909 31 H 0.013 0.987 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.496 -9.183 1.332 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.125 4.125 4 C -0.113 4.113 5 C 0.002 3.998 6 C -0.228 4.228 7 N -0.001 5.001 8 N -0.354 5.354 9 C 0.194 3.806 10 H 0.061 0.939 11 C -0.210 4.210 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.126 4.126 21 C -0.060 4.060 22 Cl -0.050 7.050 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.156 0.844 28 H 0.121 0.879 29 H 0.206 0.794 30 H 0.109 0.891 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.422 -7.931 1.353 18.287 hybrid contribution 1.390 -1.426 -0.423 2.035 sum -15.032 -9.356 0.930 17.731 Atomic orbital electron populations 1.20827 0.90713 1.03127 1.02567 1.19735 0.96430 0.91460 1.01655 1.20928 0.94103 0.96862 1.00638 1.21509 0.93618 0.98669 0.97549 1.18314 0.91027 0.92275 0.98149 1.23353 0.92267 0.94229 1.12927 1.73878 0.96303 1.26795 1.03079 1.49146 0.96592 1.09941 1.79697 1.18587 0.89548 0.79398 0.93103 0.93930 1.22210 0.98211 1.02975 0.97604 1.21224 1.01961 0.97110 1.36898 0.92150 1.24858 0.98487 0.94895 0.95350 1.69886 1.36975 1.00905 1.44535 0.86411 0.82697 0.78097 0.79698 1.20484 1.20977 1.19852 1.20965 0.91606 0.98317 1.01678 1.20543 0.91973 0.86263 1.07230 1.98336 1.76685 1.32909 1.97067 0.91020 0.91319 0.91124 0.85237 0.84356 0.87869 0.79363 0.89058 0.96805 0.95463 0.92488 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.60 36.00 0.35 -0.66 16 2 C -0.09 -1.03 5.89 -104.49 -0.62 -1.65 16 3 C -0.11 -1.26 9.68 -39.65 -0.38 -1.64 16 4 C -0.09 -1.31 9.58 -39.15 -0.37 -1.68 16 5 C 0.01 0.07 5.87 -105.05 -0.62 -0.54 16 6 C -0.02 -0.34 10.75 -14.67 -0.16 -0.50 16 7 N -0.19 -3.71 10.61 32.16 0.34 -3.37 16 8 N -0.62 -13.39 6.10 -5.88 -0.04 -13.43 16 9 C 0.30 7.40 3.23 -69.08 -0.22 7.18 16 10 H 0.04 1.18 8.14 -51.92 -0.42 0.76 16 11 C -0.15 -3.65 9.29 37.16 0.35 -3.30 16 12 C -0.53 -14.12 8.74 -34.44 -0.30 -14.42 16 13 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 14 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 15 N -0.89 -24.35 11.32 55.43 0.63 -23.72 16 16 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.10 -1.33 9.57 -39.11 -0.37 -1.70 16 21 C -0.03 -0.40 6.31 -39.56 -0.25 -0.65 16 22 Cl -0.08 -0.84 27.27 -51.86 -1.41 -2.25 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 25 H 0.07 0.60 6.88 -51.93 -0.36 0.24 16 26 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 27 H 0.14 2.07 7.55 -52.48 -0.40 1.67 16 28 H 0.10 1.52 8.02 -52.49 -0.42 1.10 16 29 H 0.37 7.43 8.58 -182.59 -1.57 5.86 16 30 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -27.45 309.94 -9.09 -36.54 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.56 Total: 3.94 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.70 Total: -17.88 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.93 Total: -40.52 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.41 Total: -2.25 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.45 -9.09 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766454456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.981 kcal (2) G-P(sol) polarization free energy of solvation -27.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds