Wall clock time and date at job start Mon Mar 30 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38367 * 119.85018 * 2 1 4 4 C 1.37921 * 120.17100 * 179.74175 * 3 2 1 5 5 C 1.39701 * 119.86888 * 0.51010 * 4 3 2 6 6 C 1.47496 * 120.15067 * 179.74782 * 5 4 3 7 7 N 1.29736 * 119.99974 * 359.71958 * 6 5 4 8 8 N 1.40105 * 119.99968 * 180.02562 * 7 6 5 9 9 C 1.46499 * 120.00063 * 180.02562 * 8 7 6 10 10 H 1.09008 * 109.47058 * 330.00507 * 9 8 7 11 11 C 1.52999 * 109.47276 * 89.99692 * 9 8 7 12 12 C 1.50699 * 109.47248 * 209.99951 * 9 8 7 13 13 H 1.08000 * 120.00005 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99921 * 179.97438 * 12 9 8 15 15 N 1.31510 * 119.99976 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99793 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47039 * 90.00039 * 16 14 12 18 18 H 1.48503 * 109.47257 * 209.99917 * 16 14 12 19 19 H 1.48498 * 109.47398 * 330.00272 * 16 14 12 20 20 C 1.39647 * 119.70154 * 359.46903 * 5 4 3 21 21 C 1.38078 * 119.82445 * 0.27638 * 20 5 4 22 22 Cl 1.73599 * 119.93614 * 180.02562 * 21 20 5 23 23 H 1.08994 * 109.47738 * 270.02275 * 1 2 3 24 24 H 1.09001 * 109.47165 * 30.02671 * 1 2 3 25 25 H 1.09004 * 109.47184 * 150.02199 * 1 2 3 26 26 H 1.07998 * 119.91501 * 0.02562 * 3 2 1 27 27 H 1.08006 * 120.06679 * 180.25558 * 4 3 2 28 28 H 1.07999 * 119.99953 * 179.72660 * 6 5 4 29 29 H 0.96999 * 119.99953 * 0.02562 * 8 7 6 30 30 H 1.08996 * 109.47549 * 179.97438 * 11 9 8 31 31 H 1.08998 * 109.47074 * 300.00425 * 11 9 8 32 32 H 1.09007 * 109.46853 * 59.99785 * 11 9 8 33 33 H 0.97007 * 119.99893 * 180.02562 * 15 14 12 34 34 H 1.07993 * 120.08823 * 180.25380 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5749 1.2078 0.0054 5 6 4.2774 0.0003 0.0000 6 6 5.7524 0.0014 0.0001 7 7 6.4002 1.1254 -0.0003 8 7 7.8013 1.1264 -0.0008 9 6 8.5329 2.3956 -0.0008 10 1 7.9430 3.1550 -0.5142 11 6 8.7880 2.8372 1.4417 12 6 9.8496 2.2165 -0.7116 13 1 10.1147 1.2536 -1.1227 14 6 10.7153 3.2822 -0.8381 15 7 10.3922 4.4547 -0.3379 16 14 12.3476 3.0600 -1.7186 17 1 12.1736 3.3500 -3.1646 18 1 13.3509 3.9920 -1.1441 19 1 12.8162 1.6613 -1.5472 20 6 3.5769 -1.2077 0.0005 21 6 2.1962 -1.2009 0.0005 22 17 1.3224 -2.7010 0.0018 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6519 2.1332 0.0004 27 1 4.1107 2.1456 0.0095 28 1 6.2930 -0.9336 0.0005 29 1 8.2869 0.2867 -0.0011 30 1 9.3327 3.7813 1.4418 31 1 7.8357 2.9667 1.9559 32 1 9.3778 2.0778 1.9553 33 1 11.0011 5.2046 -0.4272 34 1 4.1137 -2.1448 0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766454456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:32 Heat of formation + Delta-G solvation = 31.289799 kcal Electronic energy + Delta-G solvation = -16651.546937 eV Core-core repulsion = 13802.961723 eV Total energy + Delta-G solvation = -2848.585214 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39680 -38.14831 -37.36259 -35.98731 -34.14388 -32.68153 -31.68048 -29.61112 -27.51792 -27.13563 -23.83673 -23.51351 -22.23612 -21.28129 -18.89622 -17.67911 -17.46630 -16.80151 -16.27530 -16.00836 -15.51947 -15.10553 -14.79189 -14.50086 -14.40332 -14.08098 -13.54780 -13.23760 -13.18025 -12.93320 -12.83936 -12.72498 -12.54097 -12.29568 -12.18946 -12.12393 -11.99113 -11.68694 -11.18138 -10.93040 -10.59777 -9.92428 -9.68917 -8.42413 -8.18484 -6.36228 -0.07537 0.28963 1.15767 1.42971 1.43046 1.53749 1.63803 2.14636 2.45874 2.84020 3.10103 3.76549 3.85049 4.01120 4.20529 4.34284 4.53874 4.67242 4.73782 4.78079 4.85057 4.95383 4.98301 5.04474 5.11859 5.27731 5.36374 5.46997 5.51172 5.58181 5.77619 5.86642 5.87188 6.15836 6.38394 6.82304 7.35342 7.72400 8.85975 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.042829 B = 0.003137 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.600159 B = 8923.329557 C = 9263.450700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.108 4.108 4 C -0.102 4.102 5 C -0.028 4.028 6 C 0.021 3.979 7 N -0.236 5.236 8 N -0.638 5.638 9 C 0.307 3.693 10 H 0.003 0.997 11 C -0.137 4.137 12 C -0.550 4.550 13 H 0.061 0.939 14 C 0.020 3.980 15 N -0.914 5.914 16 Si 0.970 3.030 17 H -0.276 1.276 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.094 4.094 21 C -0.045 4.045 22 Cl -0.063 7.063 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.154 0.846 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.375 0.625 30 H 0.069 0.931 31 H 0.018 0.982 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.079 -10.808 1.098 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.126 4.126 4 C -0.122 4.122 5 C -0.030 4.030 6 C -0.189 4.189 7 N -0.046 5.046 8 N -0.375 5.375 9 C 0.203 3.797 10 H 0.021 0.979 11 C -0.196 4.196 12 C -0.589 4.589 13 H 0.080 0.920 14 C -0.181 4.181 15 N -0.552 5.552 16 Si 0.795 3.205 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.115 4.115 21 C -0.072 4.072 22 Cl -0.034 7.034 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.172 0.828 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.212 0.788 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.024 -9.568 1.122 20.437 hybrid contribution 1.530 -1.078 -0.342 1.903 sum -16.493 -10.646 0.780 19.646 Atomic orbital electron populations 1.20925 0.88475 1.04221 1.03691 1.20136 0.98069 0.90931 0.99017 1.21172 0.93164 0.98304 0.99964 1.21533 0.94817 0.97961 0.97909 1.18327 0.89962 0.93402 1.01328 1.23928 0.93400 0.94279 1.07275 1.73923 0.95247 1.28354 1.07044 1.48585 0.97438 1.08603 1.82832 1.18138 0.88866 0.80093 0.92596 0.97936 1.22026 0.98099 1.01838 0.97643 1.21530 1.02790 0.97317 1.37239 0.92044 1.25700 1.01866 0.94545 0.95974 1.70011 1.38166 1.01592 1.45435 0.85379 0.78473 0.78312 0.78375 1.20209 1.20478 1.19061 1.21111 0.92136 0.98146 1.00115 1.20696 0.91978 0.87313 1.07206 1.98345 1.76196 1.31888 1.96980 0.89716 0.89617 0.90734 0.82813 0.86044 0.85958 0.78827 0.91200 0.96268 0.95084 0.92350 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.60 71.24 0.68 -0.92 16 2 C -0.08 -1.58 5.89 -19.78 -0.12 -1.70 16 3 C -0.11 -2.32 9.68 22.23 0.22 -2.11 16 4 C -0.10 -2.80 9.58 22.55 0.22 -2.59 16 5 C -0.03 -0.78 5.87 -20.14 -0.12 -0.90 16 6 C 0.02 0.67 10.75 87.44 0.94 1.61 16 7 N -0.24 -9.60 10.61 -52.17 -0.55 -10.15 16 8 N -0.64 -28.52 6.10 -172.52 -1.05 -29.57 16 9 C 0.31 16.01 3.23 44.24 0.14 16.15 16 10 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 11 C -0.14 -6.86 9.29 71.98 0.67 -6.19 16 12 C -0.55 -29.84 8.74 25.60 0.22 -29.61 16 13 H 0.06 3.23 7.79 -2.91 -0.02 3.21 16 14 C 0.02 1.06 5.30 84.66 0.45 1.51 16 15 N -0.91 -51.53 11.32 21.45 0.24 -51.29 16 16 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 C -0.09 -2.19 9.57 22.57 0.22 -1.97 16 21 C -0.05 -0.97 6.31 22.29 0.14 -0.83 16 22 Cl -0.06 -1.16 27.27 -2.72 -0.07 -1.24 16 23 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 24 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 25 H 0.07 1.00 6.88 -2.38 -0.02 0.99 16 26 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 27 H 0.12 3.75 7.55 -2.91 -0.02 3.72 16 28 H 0.12 3.44 8.02 -2.91 -0.02 3.41 16 29 H 0.37 15.37 8.58 -213.32 -1.83 13.54 16 30 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.27 14.20 8.31 -92.70 -0.77 13.43 16 34 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -60.04 309.94 3.53 -56.51 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.72 Total: 18.92 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.66 Total: -27.54 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -1.36 Total: -91.01 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.07 Total: -1.24 kcal Total: -60.04 3.53 -56.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766454456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.798 kcal (2) G-P(sol) polarization free energy of solvation -60.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds