Wall clock time and date at job start Mon Mar 30 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37933 * 120.07804 * 2 1 4 4 C 1.38461 * 120.14848 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 119.85985 * 179.97438 * 4 3 2 6 6 C 1.38507 * 120.28774 * 359.69983 * 4 3 2 7 7 C 1.37893 * 120.14130 * 0.55441 * 6 4 3 8 8 C 1.39671 * 120.07296 * 179.97438 * 2 1 3 9 9 C 1.47493 * 120.13989 * 0.02562 * 8 2 1 10 10 N 1.29747 * 119.99849 * 354.49612 * 9 8 2 11 11 N 1.40104 * 119.99727 * 179.97438 * 10 9 8 12 12 C 1.46496 * 119.99722 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47485 * 30.00483 * 12 11 10 14 14 C 1.52997 * 109.47340 * 270.00368 * 12 11 10 15 15 C 1.50706 * 109.47091 * 150.00522 * 12 11 10 16 16 H 1.07998 * 119.99599 * 359.97438 * 15 12 11 17 17 C 1.37869 * 120.00033 * 180.02562 * 15 12 11 18 18 N 1.31521 * 120.00165 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00083 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47236 * 89.99700 * 19 17 15 21 21 H 1.48502 * 109.47241 * 210.00107 * 19 17 15 22 22 H 1.48501 * 109.46880 * 329.99922 * 19 17 15 23 23 H 1.08995 * 109.47410 * 263.02531 * 1 2 3 24 24 H 1.09004 * 109.46891 * 23.02707 * 1 2 3 25 25 H 1.08997 * 109.47056 * 143.02177 * 1 2 3 26 26 H 1.08007 * 119.92698 * 359.97289 * 3 2 1 27 27 H 1.07994 * 119.93468 * 180.30547 * 6 4 3 28 28 H 1.08000 * 120.07892 * 179.75017 * 7 6 4 29 29 H 1.07999 * 120.00209 * 174.49282 * 9 8 2 30 30 H 0.96999 * 119.99775 * 0.02562 * 11 10 9 31 31 H 1.08998 * 109.47266 * 299.99869 * 14 12 11 32 32 H 1.08999 * 109.47510 * 60.00031 * 14 12 11 33 33 H 1.09007 * 109.47220 * 180.02562 * 14 12 11 34 34 H 0.97005 * 119.99586 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5828 1.1953 0.0005 5 17 4.4453 2.7019 -0.0001 6 6 4.2829 0.0002 0.0073 7 6 3.6039 -1.2000 0.0021 8 6 2.2068 -1.2087 0.0005 9 6 1.4741 -2.4888 0.0005 10 7 0.1811 -2.4961 0.1078 11 7 -0.5149 -3.7120 0.1073 12 6 -1.9748 -3.7203 0.2290 13 1 -2.3812 -2.8087 -0.2093 14 6 -2.3630 -3.7925 1.7071 15 6 -2.5325 -4.9181 -0.4959 16 1 -1.8661 -5.6043 -0.9974 17 6 -3.8934 -5.1374 -0.5197 18 7 -4.7050 -4.3016 0.0906 19 14 -4.5847 -6.6217 -1.4188 20 1 -4.6663 -7.7729 -0.4842 21 1 -5.9417 -6.3026 -1.9307 22 1 -3.6958 -6.9697 -2.5562 23 1 -0.3634 -0.1248 1.0200 24 1 -0.3633 0.9458 -0.4020 25 1 -0.3633 -0.8209 -0.6181 26 1 1.6583 2.1290 -0.0004 27 1 5.3628 0.0082 0.0127 28 1 4.1508 -2.1313 0.0033 29 1 2.0139 -3.4199 -0.0888 30 1 -0.0301 -4.5483 0.0271 31 1 -1.9567 -4.7040 2.1454 32 1 -1.9597 -2.9262 2.2315 33 1 -3.4493 -3.7991 1.7976 34 1 -5.6625 -4.4557 0.0735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767388699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:49 Heat of formation + Delta-G solvation = 54.870060 kcal Electronic energy + Delta-G solvation = -17009.794794 eV Core-core repulsion = 14162.232096 eV Total energy + Delta-G solvation = -2847.562698 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42217 -36.81297 -36.22294 -34.19605 -32.52461 -31.79094 -30.20296 -27.34852 -26.74972 -25.28249 -22.99162 -21.85354 -20.43277 -20.06569 -17.15640 -16.50394 -16.19843 -15.39805 -14.91563 -14.65795 -13.99592 -13.91114 -13.37621 -12.99189 -12.79976 -12.57949 -12.35540 -12.01302 -11.65951 -11.51329 -11.42958 -11.24655 -11.08542 -10.86301 -10.76100 -10.59546 -10.30284 -10.26236 -9.33879 -9.05908 -8.79637 -8.67603 -8.51404 -6.88038 -6.19750 -4.28469 0.97210 1.37615 2.13637 2.85694 3.20297 3.27224 3.29360 3.68476 3.90602 4.31232 4.81745 4.89563 5.08981 5.13245 5.27092 5.40616 5.63755 5.81963 5.94363 6.07869 6.17946 6.24020 6.27450 6.48653 6.67346 6.79439 6.88231 6.92890 7.03469 7.08600 7.50224 7.69374 7.78889 8.06621 8.22176 8.78550 9.19609 9.38782 10.85995 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.048197 B = 0.003327 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.814314 B = 8414.804335 C = 8648.011503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C -0.112 4.112 4 C -0.041 4.041 5 Cl -0.085 7.085 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.006 4.006 9 C -0.022 4.022 10 N -0.180 5.180 11 N -0.622 5.622 12 C 0.297 3.703 13 H 0.043 0.957 14 C -0.151 4.151 15 C -0.533 4.533 16 H 0.060 0.940 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.274 1.274 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.103 0.897 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.105 0.895 30 H 0.369 0.631 31 H 0.026 0.974 32 H 0.013 0.987 33 H 0.091 0.909 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.480 8.381 0.362 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.131 4.131 4 C -0.068 4.068 5 Cl -0.056 7.056 6 C -0.137 4.137 7 C -0.120 4.120 8 C -0.008 4.008 9 C -0.228 4.228 10 N 0.006 4.994 11 N -0.358 5.358 12 C 0.194 3.806 13 H 0.061 0.939 14 C -0.210 4.210 15 C -0.572 4.572 16 H 0.078 0.922 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.093 0.907 24 H 0.070 0.930 25 H 0.121 0.879 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.122 0.878 30 H 0.205 0.795 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.109 0.891 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.283 9.063 0.508 16.088 hybrid contribution 0.557 -1.641 -0.507 1.806 sum 13.840 7.422 0.001 15.705 Atomic orbital electron populations 1.21135 0.89376 1.02811 1.03807 1.20123 0.97143 0.91090 0.97134 1.20867 0.91710 0.98613 1.01874 1.20893 0.92358 0.86551 1.07044 1.98345 1.77245 1.32899 1.97115 1.20800 0.99985 0.90574 1.02319 1.21053 0.92887 0.97600 1.00474 1.18463 0.92222 0.91327 0.98788 1.23460 0.91328 0.95521 1.12521 1.74250 1.08795 1.12679 1.03716 1.49274 1.07649 0.99870 1.79005 1.18568 0.71434 0.97815 0.92735 0.93942 1.22210 1.04056 0.97017 0.97726 1.21229 0.92191 1.09674 1.34104 0.92186 1.24854 0.96634 0.96776 0.95307 1.69887 1.03750 1.36230 1.42412 0.86425 0.78396 0.82323 0.79846 1.20512 1.20972 1.19862 0.90672 0.92961 0.87867 0.85194 0.85275 0.85051 0.87787 0.79516 0.95506 0.96812 0.89097 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 8.61 36.00 0.31 -1.44 16 2 C -0.05 -0.75 5.92 -104.20 -0.62 -1.37 16 3 C -0.11 -1.43 9.44 -39.61 -0.37 -1.81 16 4 C -0.04 -0.49 6.32 -39.40 -0.25 -0.74 16 5 Cl -0.08 -0.92 28.95 -51.86 -1.50 -2.43 16 6 C -0.12 -1.32 9.81 -39.61 -0.39 -1.71 16 7 C -0.10 -1.17 9.79 -39.16 -0.38 -1.55 16 8 C -0.01 -0.08 5.87 -105.04 -0.62 -0.70 16 9 C -0.02 -0.36 10.70 -14.66 -0.16 -0.51 16 10 N -0.18 -3.41 7.42 32.16 0.24 -3.17 16 11 N -0.62 -13.03 6.10 -5.88 -0.04 -13.07 16 12 C 0.30 7.23 3.23 -69.08 -0.22 7.01 16 13 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.15 -3.59 9.29 37.16 0.35 -3.24 16 15 C -0.53 -13.89 8.74 -34.44 -0.30 -14.19 16 16 H 0.06 1.53 7.79 -52.49 -0.41 1.13 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -24.07 11.32 55.43 0.63 -23.45 16 19 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 25 H 0.10 1.83 5.67 -51.93 -0.29 1.54 16 26 H 0.13 1.47 8.05 -52.48 -0.42 1.05 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.10 1.47 8.02 -52.49 -0.42 1.05 16 30 H 0.37 7.19 8.58 -182.60 -1.57 5.62 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -26.66 306.88 -9.33 -35.99 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.52 Total: 4.75 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.75 Total: -18.57 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.83 Total: -39.69 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.66 -9.33 -35.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767388699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.861 kcal (2) G-P(sol) polarization free energy of solvation -26.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds