Wall clock time and date at job start Mon Mar 30 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37933 * 120.07804 * 2 1 4 4 C 1.38461 * 120.14848 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 119.85985 * 179.97438 * 4 3 2 6 6 C 1.38507 * 120.28774 * 359.69983 * 4 3 2 7 7 C 1.37893 * 120.14130 * 0.55441 * 6 4 3 8 8 C 1.39671 * 120.07296 * 179.97438 * 2 1 3 9 9 C 1.47493 * 120.13989 * 0.02562 * 8 2 1 10 10 N 1.29747 * 119.99849 * 354.49612 * 9 8 2 11 11 N 1.40104 * 119.99727 * 179.97438 * 10 9 8 12 12 C 1.46496 * 119.99722 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47485 * 30.00483 * 12 11 10 14 14 C 1.52997 * 109.47340 * 270.00368 * 12 11 10 15 15 C 1.50706 * 109.47091 * 150.00522 * 12 11 10 16 16 H 1.07998 * 119.99599 * 359.97438 * 15 12 11 17 17 C 1.37869 * 120.00033 * 180.02562 * 15 12 11 18 18 N 1.31521 * 120.00165 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00083 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47236 * 89.99700 * 19 17 15 21 21 H 1.48502 * 109.47241 * 210.00107 * 19 17 15 22 22 H 1.48501 * 109.46880 * 329.99922 * 19 17 15 23 23 H 1.08995 * 109.47410 * 263.02531 * 1 2 3 24 24 H 1.09004 * 109.46891 * 23.02707 * 1 2 3 25 25 H 1.08997 * 109.47056 * 143.02177 * 1 2 3 26 26 H 1.08007 * 119.92698 * 359.97289 * 3 2 1 27 27 H 1.07994 * 119.93468 * 180.30547 * 6 4 3 28 28 H 1.08000 * 120.07892 * 179.75017 * 7 6 4 29 29 H 1.07999 * 120.00209 * 174.49282 * 9 8 2 30 30 H 0.96999 * 119.99775 * 0.02562 * 11 10 9 31 31 H 1.08998 * 109.47266 * 299.99869 * 14 12 11 32 32 H 1.08999 * 109.47510 * 60.00031 * 14 12 11 33 33 H 1.09007 * 109.47220 * 180.02562 * 14 12 11 34 34 H 0.97005 * 119.99586 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5828 1.1953 0.0005 5 17 4.4453 2.7019 -0.0001 6 6 4.2829 0.0002 0.0073 7 6 3.6039 -1.2000 0.0021 8 6 2.2068 -1.2087 0.0005 9 6 1.4741 -2.4888 0.0005 10 7 0.1811 -2.4961 0.1078 11 7 -0.5149 -3.7120 0.1073 12 6 -1.9748 -3.7203 0.2290 13 1 -2.3812 -2.8087 -0.2093 14 6 -2.3630 -3.7925 1.7071 15 6 -2.5325 -4.9181 -0.4959 16 1 -1.8661 -5.6043 -0.9974 17 6 -3.8934 -5.1374 -0.5197 18 7 -4.7050 -4.3016 0.0906 19 14 -4.5847 -6.6217 -1.4188 20 1 -4.6663 -7.7729 -0.4842 21 1 -5.9417 -6.3026 -1.9307 22 1 -3.6958 -6.9697 -2.5562 23 1 -0.3634 -0.1248 1.0200 24 1 -0.3633 0.9458 -0.4020 25 1 -0.3633 -0.8209 -0.6181 26 1 1.6583 2.1290 -0.0004 27 1 5.3628 0.0082 0.0127 28 1 4.1508 -2.1313 0.0033 29 1 2.0139 -3.4199 -0.0888 30 1 -0.0301 -4.5483 0.0271 31 1 -1.9567 -4.7040 2.1454 32 1 -1.9597 -2.9262 2.2315 33 1 -3.4493 -3.7991 1.7976 34 1 -5.6625 -4.4557 0.0735 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767388699.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:49 Heat of formation + Delta-G solvation = 41.791941 kcal Electronic energy + Delta-G solvation = -17010.361904 eV Core-core repulsion = 14162.232096 eV Total energy + Delta-G solvation = -2848.129807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46858 -38.11479 -37.37675 -35.86915 -33.80073 -33.21232 -31.61683 -28.79862 -27.97652 -27.26853 -24.22702 -22.92322 -22.20313 -21.28803 -18.81394 -17.72294 -17.49850 -16.97795 -16.37488 -15.83134 -15.38840 -15.13565 -14.60594 -14.47247 -14.14014 -14.02848 -13.65902 -13.37172 -13.14417 -13.00064 -12.77252 -12.68445 -12.48839 -12.38939 -12.26451 -12.10238 -11.95069 -11.70485 -11.11437 -10.59391 -10.50376 -9.87993 -9.70486 -8.38099 -8.16613 -6.34372 -0.10383 0.39431 1.19007 1.43084 1.43614 1.53858 1.65734 2.17561 2.47349 2.83729 3.11603 3.81444 3.92890 3.94754 4.26729 4.35607 4.62522 4.66069 4.73951 4.87985 4.92803 4.99097 5.02564 5.08635 5.14900 5.29297 5.32937 5.47230 5.60449 5.69832 5.80917 5.89453 5.90250 6.18980 6.42446 6.85606 7.37393 7.76880 8.87133 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.048197 B = 0.003327 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.814314 B = 8414.804335 C = 8648.011503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.063 4.063 3 C -0.119 4.119 4 C -0.039 4.039 5 Cl -0.071 7.071 6 C -0.115 4.115 7 C -0.083 4.083 8 C -0.036 4.036 9 C 0.013 3.987 10 N -0.221 5.221 11 N -0.642 5.642 12 C 0.309 3.691 13 H 0.004 0.996 14 C -0.137 4.137 15 C -0.548 4.548 16 H 0.061 0.939 17 C 0.020 3.980 18 N -0.914 5.914 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.269 1.269 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.159 0.841 28 H 0.162 0.838 29 H 0.127 0.873 30 H 0.373 0.627 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.068 0.932 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.071 8.450 -0.025 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.066 4.066 5 Cl -0.042 7.042 6 C -0.133 4.133 7 C -0.103 4.103 8 C -0.039 4.039 9 C -0.195 4.195 10 N -0.032 5.032 11 N -0.378 5.378 12 C 0.205 3.795 13 H 0.022 0.978 14 C -0.196 4.196 15 C -0.587 4.587 16 H 0.079 0.921 17 C -0.181 4.181 18 N -0.552 5.552 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.194 1.194 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.159 0.841 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.144 0.856 30 H 0.210 0.790 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.892 9.142 0.124 18.335 hybrid contribution 0.039 -1.438 -0.396 1.492 sum 15.931 7.705 -0.272 17.698 Atomic orbital electron populations 1.20989 0.90625 1.02520 1.02487 1.20123 0.96492 0.92070 0.97866 1.20961 0.92360 0.98450 1.01964 1.21095 0.92268 0.87625 1.05653 1.98358 1.76769 1.32148 1.96951 1.21158 1.01461 0.89795 1.00907 1.21370 0.91630 0.99244 0.98106 1.18605 0.93471 0.90389 1.01396 1.24052 0.90778 0.97286 1.07392 1.74374 1.10135 1.11511 1.07161 1.48725 1.06351 1.00751 1.82017 1.18090 0.73691 0.95466 0.92239 0.97768 1.22026 1.02416 0.97275 0.97894 1.21543 0.92676 1.10198 1.34313 0.92107 1.25676 0.96968 0.99399 0.96012 1.70014 1.03949 1.37789 1.43442 0.85412 0.77530 0.79049 0.78740 1.19794 1.20775 1.19404 0.92072 0.91445 0.90493 0.84133 0.82375 0.82063 0.85605 0.79043 0.95230 0.96266 0.91352 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.42 8.61 71.23 0.61 -2.81 16 2 C -0.06 -1.75 5.92 -19.59 -0.12 -1.87 16 3 C -0.12 -2.83 9.44 22.25 0.21 -2.62 16 4 C -0.04 -0.82 6.32 22.39 0.14 -0.68 16 5 Cl -0.07 -1.34 28.95 -2.72 -0.08 -1.42 16 6 C -0.11 -2.11 9.81 22.25 0.22 -1.90 16 7 C -0.08 -1.65 9.79 22.54 0.22 -1.43 16 8 C -0.04 -0.97 5.87 -20.14 -0.12 -1.09 16 9 C 0.01 0.40 10.70 87.44 0.94 1.34 16 10 N -0.22 -8.54 7.42 -52.16 -0.39 -8.93 16 11 N -0.64 -27.67 6.10 -172.52 -1.05 -28.72 16 12 C 0.31 15.72 3.23 44.25 0.14 15.87 16 13 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 14 C -0.14 -6.75 9.29 71.98 0.67 -6.08 16 15 C -0.55 -29.29 8.74 25.60 0.22 -29.07 16 16 H 0.06 3.15 7.79 -2.91 -0.02 3.13 16 17 C 0.02 1.06 5.30 84.65 0.45 1.51 16 18 N -0.91 -51.09 11.32 21.45 0.24 -50.84 16 19 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.07 1.81 8.04 -2.38 -0.02 1.79 16 25 H 0.08 2.87 5.67 -2.39 -0.01 2.86 16 26 H 0.14 2.96 8.05 -2.91 -0.02 2.93 16 27 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 28 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.13 3.26 8.02 -2.91 -0.02 3.24 16 30 H 0.37 14.76 8.58 -213.32 -1.83 12.93 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 3.66 6.07 -2.38 -0.01 3.65 16 34 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -58.62 306.88 3.62 -55.00 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.72 Total: 19.68 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 3.59 Total: -28.82 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -1.20 Total: -88.49 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -58.62 3.62 -55.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767388699.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.789 kcal (2) G-P(sol) polarization free energy of solvation -58.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds