Wall clock time and date at job start Mon Mar 30 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29746 * 119.99989 * 2 1 4 4 N 1.40105 * 120.00041 * 359.97438 * 3 2 1 5 5 C 1.46497 * 120.00129 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47078 * 29.99710 * 5 4 3 7 7 C 1.53000 * 109.47021 * 270.00290 * 5 4 3 8 8 C 1.50694 * 109.47115 * 150.00071 * 5 4 3 9 9 H 1.08000 * 120.00563 * 359.97438 * 8 5 4 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 5 4 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 5 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.47493 * 120.00273 * 179.97438 * 2 1 3 17 17 C 1.39683 * 120.13911 * 359.72484 * 16 2 1 18 18 C 1.37920 * 119.85540 * 179.74007 * 17 16 2 19 19 C 1.38487 * 120.14045 * 0.51461 * 18 17 16 20 20 Cl 1.73593 * 119.85610 * 179.74251 * 19 18 17 21 21 C 1.38483 * 120.28462 * 359.76321 * 19 18 17 22 22 C 1.37913 * 120.15103 * 359.97438 * 21 19 18 23 23 H 1.08996 * 109.47272 * 90.00213 * 1 2 3 24 24 H 1.09001 * 109.47160 * 210.00876 * 1 2 3 25 25 H 1.09002 * 109.46947 * 330.00147 * 1 2 3 26 26 H 0.96998 * 119.99525 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.47106 * 299.99878 * 7 5 4 28 28 H 1.08998 * 109.47089 * 59.99825 * 7 5 4 29 29 H 1.08995 * 109.47131 * 179.97438 * 7 5 4 30 30 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 31 31 H 1.08008 * 120.07350 * 359.97287 * 17 16 2 32 32 H 1.07999 * 119.92822 * 180.25309 * 18 17 16 33 33 H 1.08006 * 119.92768 * 179.97438 * 21 19 18 34 34 H 1.07996 * 120.07619 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1236 0.0000 4 7 1.4552 2.3370 -0.0005 5 6 2.1876 3.6057 -0.0011 6 1 3.1401 3.4751 -0.5149 7 6 2.4427 4.0480 1.4412 8 6 1.3732 4.6556 -0.7119 9 1 0.4068 4.4031 -1.1227 10 6 1.8623 5.9385 -0.8389 11 7 3.0393 6.2460 -0.3393 12 14 0.8530 7.2397 -1.7207 13 1 1.1919 7.2335 -3.1665 14 1 -0.5924 6.9451 -1.5498 15 1 1.1572 8.5752 -1.1467 16 6 2.2445 -1.2773 0.0006 17 6 1.5491 -2.4887 0.0069 18 6 2.2446 -3.6797 0.0020 19 6 3.6295 -3.6762 0.0015 20 17 4.4975 -5.1795 0.0021 21 6 4.3248 -2.4786 0.0011 22 6 3.6413 -1.2807 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5140 25 1 -0.3633 0.8900 0.5138 26 1 0.4852 2.3369 -0.0005 27 1 1.4903 4.1785 1.9550 28 1 3.0318 3.2885 1.9553 29 1 2.9880 4.9917 1.4408 30 1 3.3835 7.1484 -0.4290 31 1 0.4690 -2.4927 0.0119 32 1 1.7081 -4.6170 0.0027 33 1 5.4049 -2.4826 0.0011 34 1 4.1848 -0.3475 0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771880595.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:18 Heat of formation + Delta-G solvation = 50.349816 kcal Electronic energy + Delta-G solvation = -16930.669137 eV Core-core repulsion = 14082.910427 eV Total energy + Delta-G solvation = -2847.758710 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29715 -37.09087 -36.31171 -34.41845 -32.09898 -31.15460 -30.13220 -28.40580 -26.79395 -25.25787 -22.99118 -22.48551 -20.53638 -19.14459 -17.50127 -16.65849 -15.82253 -15.27890 -14.95047 -14.36680 -14.26358 -13.99157 -13.53176 -13.34990 -13.24805 -12.64183 -12.16567 -11.94470 -11.61940 -11.54396 -11.50441 -11.31259 -11.06480 -10.86169 -10.78962 -10.49521 -10.28303 -10.20068 -9.56233 -9.09854 -9.02133 -8.74850 -8.52599 -6.83497 -6.19046 -4.27745 0.95153 1.36455 2.12435 2.81979 3.20976 3.27536 3.29463 3.70789 3.92214 4.31827 4.77716 4.88738 4.91463 5.13660 5.35999 5.41261 5.46551 5.61927 5.76868 5.79240 6.01528 6.05979 6.27886 6.34882 6.60149 6.69915 6.85383 6.93812 6.96585 7.08683 7.51586 7.70912 7.79168 8.07810 8.22546 8.79053 9.21683 9.39327 10.86846 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.041221 B = 0.003338 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.099057 B = 8385.872150 C = 8718.814063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.001 3.999 3 N -0.186 5.186 4 N -0.615 5.615 5 C 0.295 3.705 6 H 0.043 0.957 7 C -0.151 4.151 8 C -0.532 4.532 9 H 0.060 0.940 10 C 0.067 3.933 11 N -0.885 5.885 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.274 1.274 15 H -0.284 1.284 16 C 0.012 3.988 17 C -0.108 4.108 18 C -0.108 4.108 19 C -0.048 4.048 20 Cl -0.085 7.085 21 C -0.107 4.107 22 C -0.091 4.091 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.372 0.628 27 H 0.026 0.974 28 H 0.013 0.987 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 -17.273 1.317 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.185 4.185 3 N -0.001 5.001 4 N -0.352 5.352 5 C 0.193 3.807 6 H 0.061 0.939 7 C -0.210 4.210 8 C -0.572 4.572 9 H 0.078 0.922 10 C -0.136 4.136 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.199 1.199 15 H -0.210 1.210 16 C 0.010 3.990 17 C -0.129 4.129 18 C -0.127 4.127 19 C -0.075 4.075 20 Cl -0.056 7.056 21 C -0.126 4.126 22 C -0.111 4.111 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.210 0.790 27 H 0.045 0.955 28 H 0.032 0.968 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.332 -16.578 1.340 16.635 hybrid contribution -1.615 0.441 -0.429 1.729 sum -1.947 -16.136 0.911 16.279 Atomic orbital electron populations 1.20967 0.93132 1.02660 1.02304 1.22220 0.92828 0.90808 1.12659 1.74038 1.28558 0.93233 1.04226 1.49159 1.06424 1.00316 1.79325 1.18586 0.92814 0.76219 0.93077 0.93942 1.22208 0.99274 1.01888 0.97622 1.21215 1.04606 0.94426 1.36913 0.92197 1.24859 0.95139 0.98228 0.95348 1.69887 1.17400 1.20448 1.44535 0.86417 0.80238 0.80565 0.79715 1.20486 1.19859 1.20983 1.18395 0.92569 0.90861 0.97194 1.21157 1.00126 0.90628 1.00993 1.20852 0.91846 0.98765 1.01250 1.20933 0.92434 0.86645 1.07510 1.98347 1.77062 1.33050 1.97126 1.20981 1.00370 0.90570 1.00659 1.21372 0.93564 0.98028 0.98177 0.91390 0.91223 0.91837 0.79046 0.95497 0.96810 0.89074 0.92491 0.84857 0.85202 0.85097 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.04 36.00 0.33 -1.43 16 2 C 0.00 0.02 7.10 -79.70 -0.57 -0.54 16 3 N -0.19 -3.68 10.61 35.11 0.37 -3.31 16 4 N -0.62 -13.24 5.95 -5.88 -0.04 -13.27 16 5 C 0.30 7.36 3.23 -69.09 -0.22 7.14 16 6 H 0.04 1.18 8.14 -51.92 -0.42 0.76 16 7 C -0.15 -3.64 9.29 37.16 0.35 -3.30 16 8 C -0.53 -14.05 8.74 -34.44 -0.30 -14.35 16 9 H 0.06 1.55 7.79 -52.49 -0.41 1.14 16 10 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 11 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 12 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 16 C 0.01 0.18 5.87 -105.05 -0.62 -0.44 16 17 C -0.11 -1.26 9.36 -39.16 -0.37 -1.63 16 18 C -0.11 -1.18 9.81 -39.61 -0.39 -1.57 16 19 C -0.05 -0.56 6.32 -39.40 -0.25 -0.81 16 20 Cl -0.08 -0.90 28.95 -51.86 -1.50 -2.40 16 21 C -0.11 -1.32 9.81 -39.61 -0.39 -1.71 16 22 C -0.09 -1.29 9.58 -39.16 -0.38 -1.67 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.74 6.46 -51.93 -0.34 0.41 16 25 H 0.06 0.89 6.35 -51.93 -0.33 0.56 16 26 H 0.37 7.42 6.36 -182.60 -1.16 6.26 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.13 1.26 6.35 -52.48 -0.33 0.92 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.14 2.13 7.55 -52.49 -0.40 1.74 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -27.43 305.07 -8.81 -36.24 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.95 Total: 5.00 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.90 Total: -18.62 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.97 Total: -40.26 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.43 -8.81 -36.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880595.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.589 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds