Wall clock time and date at job start Mon Mar 30 2020 06:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29746 * 119.99989 * 2 1 4 4 N 1.40105 * 120.00041 * 359.97438 * 3 2 1 5 5 C 1.46497 * 120.00129 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47078 * 29.99710 * 5 4 3 7 7 C 1.53000 * 109.47021 * 270.00290 * 5 4 3 8 8 C 1.50694 * 109.47115 * 150.00071 * 5 4 3 9 9 H 1.08000 * 120.00563 * 359.97438 * 8 5 4 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 5 4 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 5 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.47493 * 120.00273 * 179.97438 * 2 1 3 17 17 C 1.39683 * 120.13911 * 359.72484 * 16 2 1 18 18 C 1.37920 * 119.85540 * 179.74007 * 17 16 2 19 19 C 1.38487 * 120.14045 * 0.51461 * 18 17 16 20 20 Cl 1.73593 * 119.85610 * 179.74251 * 19 18 17 21 21 C 1.38483 * 120.28462 * 359.76321 * 19 18 17 22 22 C 1.37913 * 120.15103 * 359.97438 * 21 19 18 23 23 H 1.08996 * 109.47272 * 90.00213 * 1 2 3 24 24 H 1.09001 * 109.47160 * 210.00876 * 1 2 3 25 25 H 1.09002 * 109.46947 * 330.00147 * 1 2 3 26 26 H 0.96998 * 119.99525 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.47106 * 299.99878 * 7 5 4 28 28 H 1.08998 * 109.47089 * 59.99825 * 7 5 4 29 29 H 1.08995 * 109.47131 * 179.97438 * 7 5 4 30 30 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 31 31 H 1.08008 * 120.07350 * 359.97287 * 17 16 2 32 32 H 1.07999 * 119.92822 * 180.25309 * 18 17 16 33 33 H 1.08006 * 119.92768 * 179.97438 * 21 19 18 34 34 H 1.07996 * 120.07619 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1236 0.0000 4 7 1.4552 2.3370 -0.0005 5 6 2.1876 3.6057 -0.0011 6 1 3.1401 3.4751 -0.5149 7 6 2.4427 4.0480 1.4412 8 6 1.3732 4.6556 -0.7119 9 1 0.4068 4.4031 -1.1227 10 6 1.8623 5.9385 -0.8389 11 7 3.0393 6.2460 -0.3393 12 14 0.8530 7.2397 -1.7207 13 1 1.1919 7.2335 -3.1665 14 1 -0.5924 6.9451 -1.5498 15 1 1.1572 8.5752 -1.1467 16 6 2.2445 -1.2773 0.0006 17 6 1.5491 -2.4887 0.0069 18 6 2.2446 -3.6797 0.0020 19 6 3.6295 -3.6762 0.0015 20 17 4.4975 -5.1795 0.0021 21 6 4.3248 -2.4786 0.0011 22 6 3.6413 -1.2807 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5140 25 1 -0.3633 0.8900 0.5138 26 1 0.4852 2.3369 -0.0005 27 1 1.4903 4.1785 1.9550 28 1 3.0318 3.2885 1.9553 29 1 2.9880 4.9917 1.4408 30 1 3.3835 7.1484 -0.4290 31 1 0.4690 -2.4927 0.0119 32 1 1.7081 -4.6170 0.0027 33 1 5.4049 -2.4826 0.0011 34 1 4.1848 -0.3475 0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771880595.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:17 Heat of formation + Delta-G solvation = 35.976556 kcal Electronic energy + Delta-G solvation = -16931.292408 eV Core-core repulsion = 14082.910427 eV Total energy + Delta-G solvation = -2848.381981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.34113 -38.42516 -37.35509 -36.13153 -33.75486 -32.18110 -31.55663 -29.59677 -28.32532 -27.26787 -24.17239 -23.48148 -22.29698 -20.49788 -18.92112 -17.98172 -17.25967 -16.95769 -16.19374 -15.67181 -15.45984 -15.18914 -14.85802 -14.53133 -14.43078 -14.27135 -13.82270 -13.20557 -13.07800 -12.89717 -12.76051 -12.58451 -12.52410 -12.42533 -12.29325 -12.10724 -11.85286 -11.73225 -11.13168 -10.80877 -10.58756 -9.98331 -9.84917 -8.36260 -8.17369 -6.36008 -0.12262 0.39748 1.18917 1.42776 1.42960 1.53625 1.61477 2.18133 2.47126 2.86205 3.10373 3.67991 3.88066 3.99738 4.28098 4.39506 4.41181 4.58254 4.70902 4.71171 4.82017 4.95751 5.01513 5.09003 5.10913 5.21245 5.30429 5.45752 5.52316 5.60631 5.80066 5.84518 5.89693 6.18532 6.40635 6.83550 7.35749 7.77739 8.86303 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.041221 B = 0.003338 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.099057 B = 8385.872150 C = 8718.814063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.038 3.962 3 N -0.243 5.243 4 N -0.635 5.635 5 C 0.307 3.693 6 H 0.000 1.000 7 C -0.136 4.136 8 C -0.548 4.548 9 H 0.061 0.939 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 0.970 3.030 13 H -0.277 1.277 14 H -0.265 1.265 15 H -0.280 1.280 16 C -0.022 4.022 17 C -0.090 4.090 18 C -0.105 4.105 19 C -0.044 4.044 20 Cl -0.071 7.071 21 C -0.113 4.113 22 C -0.102 4.102 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.376 0.624 27 H 0.030 0.970 28 H 0.017 0.983 29 H 0.069 0.931 30 H 0.267 0.733 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.143 0.857 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -19.732 1.064 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 N -0.055 5.055 4 N -0.373 5.373 5 C 0.203 3.797 6 H 0.018 0.982 7 C -0.196 4.196 8 C -0.587 4.587 9 H 0.080 0.920 10 C -0.181 4.181 11 N -0.553 5.553 12 Si 0.795 3.205 13 H -0.202 1.202 14 H -0.189 1.189 15 H -0.205 1.205 16 C -0.024 4.024 17 C -0.110 4.110 18 C -0.123 4.123 19 C -0.072 4.072 20 Cl -0.042 7.042 21 C -0.132 4.132 22 C -0.123 4.123 23 H 0.099 0.901 24 H 0.123 0.877 25 H 0.074 0.926 26 H 0.215 0.785 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.181 0.819 32 H 0.179 0.821 33 H 0.160 0.840 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.064 -19.059 1.091 19.202 hybrid contribution -1.013 0.816 -0.347 1.347 sum -3.077 -18.243 0.743 18.516 Atomic orbital electron populations 1.21099 0.90780 1.04007 1.03501 1.22999 0.94800 0.90620 1.06688 1.74076 1.29223 0.93491 1.08661 1.48543 1.06030 1.00050 1.82712 1.18112 0.91178 0.77947 0.92472 0.98206 1.22022 0.99062 1.00734 0.97738 1.21521 1.04815 0.95203 1.37183 0.92040 1.25713 0.96145 1.00285 0.95986 1.70018 1.18831 1.20929 1.45506 0.85378 0.79006 0.77801 0.78350 1.20239 1.18933 1.20534 1.18530 0.92673 0.91043 1.00154 1.21447 1.01536 0.89456 0.98586 1.21218 0.91502 0.99778 0.99804 1.21138 0.93169 0.86888 1.05994 1.98360 1.76922 1.31946 1.96955 1.21076 1.01102 0.90299 1.00686 1.21319 0.93998 0.98034 0.98937 0.90114 0.87659 0.92648 0.78539 0.95069 0.96438 0.91275 0.92391 0.81881 0.82106 0.83966 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.04 71.23 0.64 -2.65 16 2 C 0.04 1.20 7.10 45.31 0.32 1.52 16 3 N -0.24 -9.96 10.61 -42.82 -0.45 -10.42 16 4 N -0.64 -28.40 5.95 -172.53 -1.03 -29.43 16 5 C 0.31 16.09 3.23 44.24 0.14 16.23 16 6 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 7 C -0.14 -6.88 9.29 71.98 0.67 -6.21 16 8 C -0.55 -29.77 8.74 25.60 0.22 -29.55 16 9 H 0.06 3.23 7.79 -2.91 -0.02 3.21 16 10 C 0.02 1.03 5.30 84.66 0.45 1.48 16 11 N -0.91 -51.82 11.32 21.45 0.24 -51.58 16 12 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 13 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 14 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 C -0.02 -0.59 5.87 -20.14 -0.12 -0.71 16 17 C -0.09 -1.75 9.36 22.54 0.21 -1.54 16 18 C -0.10 -1.86 9.81 22.25 0.22 -1.64 16 19 C -0.04 -0.91 6.32 22.39 0.14 -0.77 16 20 Cl -0.07 -1.30 28.95 -2.72 -0.08 -1.38 16 21 C -0.11 -2.65 9.81 22.25 0.22 -2.43 16 22 C -0.10 -2.90 9.58 22.54 0.22 -2.68 16 23 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 24 H 0.10 1.80 6.46 -2.39 -0.02 1.79 16 25 H 0.05 1.49 6.35 -2.39 -0.02 1.47 16 26 H 0.38 15.39 6.36 -213.32 -1.36 14.03 16 27 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 30 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.16 2.19 6.35 -2.91 -0.02 2.17 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.12 3.87 7.55 -2.91 -0.02 3.85 16 Total: -1.00 -61.43 305.07 3.81 -57.63 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.24 Total: 19.77 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 3.34 Total: -28.95 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -1.24 Total: -91.42 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -61.43 3.81 -57.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880595.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.602 kcal (2) G-P(sol) polarization free energy of solvation -61.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds