Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29745 * 119.99765 * 2 1 4 4 N 1.40094 * 120.00534 * 0.02562 * 3 2 1 5 5 C 1.46496 * 120.00360 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46598 * 329.99736 * 5 4 3 7 7 C 1.53004 * 109.47064 * 89.99686 * 5 4 3 8 8 C 1.50703 * 109.47039 * 209.99964 * 5 4 3 9 9 H 1.08000 * 120.00161 * 354.36203 * 8 5 4 10 10 C 1.37881 * 119.99525 * 174.36438 * 8 5 4 11 11 N 1.31513 * 119.99659 * 156.61593 * 10 8 5 12 12 Si 1.86802 * 120.00164 * 336.88542 * 10 8 5 13 13 H 1.48497 * 109.46648 * 179.72694 * 12 10 8 14 14 H 1.48498 * 109.47155 * 299.73023 * 12 10 8 15 15 H 1.48505 * 109.46685 * 59.72885 * 12 10 8 16 16 C 1.47488 * 119.99561 * 180.02562 * 2 1 3 17 17 C 1.39681 * 120.14617 * 359.72715 * 16 2 1 18 18 C 1.37920 * 119.85282 * 179.74110 * 17 16 2 19 19 C 1.38479 * 120.14331 * 0.51187 * 18 17 16 20 20 Cl 1.73602 * 119.85567 * 179.73759 * 19 18 17 21 21 C 1.38479 * 120.29182 * 359.76269 * 19 18 17 22 22 C 1.37917 * 120.14395 * 359.97438 * 21 19 18 23 23 H 1.08998 * 109.47311 * 89.99538 * 1 2 3 24 24 H 1.08997 * 109.47441 * 210.00072 * 1 2 3 25 25 H 1.09004 * 109.47190 * 329.99916 * 1 2 3 26 26 H 0.97007 * 119.99707 * 359.97438 * 4 3 2 27 27 H 1.09003 * 109.46762 * 173.13348 * 7 5 4 28 28 H 1.08997 * 109.46949 * 293.13049 * 7 5 4 29 29 H 1.08996 * 109.47111 * 53.13511 * 7 5 4 30 30 H 0.96997 * 120.00046 * 355.20255 * 11 10 8 31 31 H 1.07998 * 120.06984 * 359.97208 * 17 16 2 32 32 H 1.08000 * 119.92628 * 180.25070 * 18 17 16 33 33 H 1.08003 * 119.93156 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.07839 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1237 0.0000 4 7 1.4553 2.3369 0.0005 5 6 2.1878 3.6056 0.0011 6 1 3.1401 3.4750 0.5149 7 6 2.4428 4.0479 -1.4412 8 6 1.3733 4.6556 0.7120 9 1 0.3702 4.4291 1.0420 10 6 1.9088 5.9053 0.9410 11 7 1.1146 6.9378 1.1224 12 14 3.7623 6.1334 0.9860 13 1 4.0791 7.5617 1.2404 14 1 4.3376 5.2979 2.0705 15 1 4.3434 5.7219 -0.3172 16 6 2.2444 -1.2773 -0.0006 17 6 1.5490 -2.4887 0.0046 18 6 2.2446 -3.6797 -0.0013 19 6 3.6293 -3.6762 -0.0018 20 17 4.4973 -5.1796 -0.0024 21 6 4.3248 -2.4787 -0.0012 22 6 3.6413 -1.2808 -0.0007 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 0.4852 2.3369 0.0005 27 1 2.8779 5.0473 -1.4432 28 1 3.1315 3.3509 -1.9186 29 1 1.5008 4.0607 -1.9893 30 1 0.1550 6.8343 1.0264 31 1 0.4690 -2.4927 0.0096 32 1 1.7081 -4.6170 -0.0014 33 1 5.4048 -2.4828 -0.0011 34 1 4.1848 -0.3475 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771880609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = 50.460792 kcal Electronic energy + Delta-G solvation = -16992.357822 eV Core-core repulsion = 14144.603925 eV Total energy + Delta-G solvation = -2847.753898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38253 -37.21099 -36.39999 -34.52414 -32.23964 -31.25145 -30.50500 -28.57570 -27.11364 -24.81133 -23.04760 -22.56203 -20.34905 -19.30895 -17.88282 -17.12515 -16.23051 -15.36069 -14.84768 -14.48388 -14.18123 -13.93285 -13.58566 -13.39799 -13.32059 -12.77683 -12.48051 -12.21039 -11.89049 -11.66007 -11.61729 -11.55035 -11.36283 -10.87572 -10.74686 -10.55940 -10.14170 -9.92423 -9.61602 -9.19079 -9.09731 -8.80632 -8.35541 -7.04422 -6.61718 -4.26059 0.86257 1.28764 2.05811 2.71127 3.33263 3.38980 3.51576 3.60336 3.83310 4.38330 4.69255 4.80464 4.83437 5.05794 5.28130 5.32248 5.38708 5.53463 5.68318 5.70497 5.93528 5.98109 6.19560 6.22738 6.31980 6.48683 6.55105 6.61699 6.73036 6.79028 7.03159 7.29940 7.81286 7.91558 8.21648 8.73900 9.06447 9.40160 10.73024 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.003675 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.154120 B = 7617.711961 C = 8180.573012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.011 3.989 3 N -0.193 5.193 4 N -0.612 5.612 5 C 0.276 3.724 6 H 0.034 0.966 7 C -0.158 4.158 8 C -0.625 4.625 9 H 0.061 0.939 10 C 0.046 3.954 11 N -0.889 5.889 12 Si 1.035 2.965 13 H -0.282 1.282 14 H -0.280 1.280 15 H -0.274 1.274 16 C 0.009 3.991 17 C -0.106 4.106 18 C -0.108 4.108 19 C -0.046 4.046 20 Cl -0.083 7.083 21 C -0.108 4.108 22 C -0.090 4.090 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.376 0.624 27 H 0.059 0.941 28 H 0.027 0.973 29 H 0.042 0.958 30 H 0.271 0.729 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -19.897 -3.269 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 N -0.007 5.007 4 N -0.349 5.349 5 C 0.172 3.828 6 H 0.052 0.948 7 C -0.218 4.218 8 C -0.663 4.663 9 H 0.079 0.921 10 C -0.162 4.162 11 N -0.521 5.521 12 Si 0.862 3.138 13 H -0.208 1.208 14 H -0.206 1.206 15 H -0.200 1.200 16 C 0.007 3.993 17 C -0.127 4.127 18 C -0.127 4.127 19 C -0.073 4.073 20 Cl -0.054 7.054 21 C -0.126 4.126 22 C -0.111 4.111 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.214 0.786 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.921 -18.224 -2.989 19.112 hybrid contribution -2.444 -1.442 -0.257 2.849 sum 2.478 -19.666 -3.246 20.085 Atomic orbital electron populations 1.20992 0.93009 1.02959 1.02319 1.22250 0.92924 0.90752 1.11683 1.74012 1.28548 0.93224 1.04890 1.48823 1.06437 0.99822 1.79787 1.18820 0.93237 0.78290 0.92452 0.94802 1.22547 0.99647 1.00194 0.99385 1.22027 1.02730 0.97777 1.43792 0.92134 1.25663 1.06573 0.91215 0.92752 1.70862 1.06222 1.30638 1.44377 0.84162 0.75455 0.76489 0.77662 1.20758 1.20634 1.19973 1.18389 0.92586 0.90817 0.97548 1.21167 1.00178 0.90606 1.00727 1.20865 0.91860 0.98805 1.01173 1.20945 0.92454 0.86715 1.07223 1.98351 1.77023 1.32957 1.97097 1.20981 1.00391 0.90560 1.00689 1.21362 0.93521 0.98018 0.98177 0.91350 0.91032 0.91672 0.78553 0.92249 0.95435 0.93855 0.91899 0.84794 0.85110 0.85048 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.04 36.01 0.33 -1.43 16 2 C 0.01 0.17 7.10 -79.70 -0.57 -0.39 16 3 N -0.19 -3.67 10.61 35.11 0.37 -3.30 16 4 N -0.61 -12.86 5.95 -5.88 -0.03 -12.90 16 5 C 0.28 6.52 2.83 -69.08 -0.20 6.33 16 6 H 0.03 0.83 6.72 -51.93 -0.35 0.48 16 7 C -0.16 -3.49 9.24 37.16 0.34 -3.15 16 8 C -0.62 -16.86 8.96 -34.44 -0.31 -17.17 16 9 H 0.06 1.74 8.01 -52.49 -0.42 1.32 16 10 C 0.05 1.27 5.19 -17.82 -0.09 1.17 16 11 N -0.89 -26.11 13.70 55.43 0.76 -25.35 16 12 Si 1.04 24.19 26.44 -169.99 -4.50 19.69 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.27 -5.93 6.14 56.52 0.35 -5.58 16 16 C 0.01 0.12 5.87 -105.04 -0.62 -0.49 16 17 C -0.11 -1.19 9.36 -39.16 -0.37 -1.55 16 18 C -0.11 -1.13 9.81 -39.61 -0.39 -1.52 16 19 C -0.05 -0.51 6.32 -39.40 -0.25 -0.76 16 20 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.35 16 21 C -0.11 -1.26 9.81 -39.61 -0.39 -1.65 16 22 C -0.09 -1.22 9.58 -39.15 -0.38 -1.59 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 0.76 6.46 -51.93 -0.34 0.42 16 25 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16 26 H 0.38 7.52 6.34 -182.60 -1.16 6.36 16 27 H 0.06 1.33 5.47 -51.93 -0.28 1.05 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 31 H 0.13 1.21 6.35 -52.49 -0.33 0.88 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.14 1.99 7.55 -52.49 -0.40 1.59 16 LS Contribution 301.65 15.07 4.55 4.55 Total: -1.00 -28.61 301.65 -8.16 -36.77 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.93 Total: 5.09 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -2.88 Total: -22.20 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 1.10 Total: -41.55 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.50 Total: 19.69 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.61 -8.16 -36.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.232 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds