Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29745 * 119.99765 * 2 1 4 4 N 1.40094 * 120.00534 * 0.02562 * 3 2 1 5 5 C 1.46496 * 120.00360 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46598 * 329.99736 * 5 4 3 7 7 C 1.53004 * 109.47064 * 89.99686 * 5 4 3 8 8 C 1.50703 * 109.47039 * 209.99964 * 5 4 3 9 9 H 1.08000 * 120.00161 * 354.36203 * 8 5 4 10 10 C 1.37881 * 119.99525 * 174.36438 * 8 5 4 11 11 N 1.31513 * 119.99659 * 156.61593 * 10 8 5 12 12 Si 1.86802 * 120.00164 * 336.88542 * 10 8 5 13 13 H 1.48497 * 109.46648 * 179.72694 * 12 10 8 14 14 H 1.48498 * 109.47155 * 299.73023 * 12 10 8 15 15 H 1.48505 * 109.46685 * 59.72885 * 12 10 8 16 16 C 1.47488 * 119.99561 * 180.02562 * 2 1 3 17 17 C 1.39681 * 120.14617 * 359.72715 * 16 2 1 18 18 C 1.37920 * 119.85282 * 179.74110 * 17 16 2 19 19 C 1.38479 * 120.14331 * 0.51187 * 18 17 16 20 20 Cl 1.73602 * 119.85567 * 179.73759 * 19 18 17 21 21 C 1.38479 * 120.29182 * 359.76269 * 19 18 17 22 22 C 1.37917 * 120.14395 * 359.97438 * 21 19 18 23 23 H 1.08998 * 109.47311 * 89.99538 * 1 2 3 24 24 H 1.08997 * 109.47441 * 210.00072 * 1 2 3 25 25 H 1.09004 * 109.47190 * 329.99916 * 1 2 3 26 26 H 0.97007 * 119.99707 * 359.97438 * 4 3 2 27 27 H 1.09003 * 109.46762 * 173.13348 * 7 5 4 28 28 H 1.08997 * 109.46949 * 293.13049 * 7 5 4 29 29 H 1.08996 * 109.47111 * 53.13511 * 7 5 4 30 30 H 0.96997 * 120.00046 * 355.20255 * 11 10 8 31 31 H 1.07998 * 120.06984 * 359.97208 * 17 16 2 32 32 H 1.08000 * 119.92628 * 180.25070 * 18 17 16 33 33 H 1.08003 * 119.93156 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.07839 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1237 0.0000 4 7 1.4553 2.3369 0.0005 5 6 2.1878 3.6056 0.0011 6 1 3.1401 3.4750 0.5149 7 6 2.4428 4.0479 -1.4412 8 6 1.3733 4.6556 0.7120 9 1 0.3702 4.4291 1.0420 10 6 1.9088 5.9053 0.9410 11 7 1.1146 6.9378 1.1224 12 14 3.7623 6.1334 0.9860 13 1 4.0791 7.5617 1.2404 14 1 4.3376 5.2979 2.0705 15 1 4.3434 5.7219 -0.3172 16 6 2.2444 -1.2773 -0.0006 17 6 1.5490 -2.4887 0.0046 18 6 2.2446 -3.6797 -0.0013 19 6 3.6293 -3.6762 -0.0018 20 17 4.4973 -5.1796 -0.0024 21 6 4.3248 -2.4787 -0.0012 22 6 3.6413 -1.2808 -0.0007 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 0.4852 2.3369 0.0005 27 1 2.8779 5.0473 -1.4432 28 1 3.1315 3.3509 -1.9186 29 1 1.5008 4.0607 -1.9893 30 1 0.1550 6.8343 1.0264 31 1 0.4690 -2.4927 0.0096 32 1 1.7081 -4.6170 -0.0014 33 1 5.4048 -2.4828 -0.0011 34 1 4.1848 -0.3475 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771880609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = 33.985929 kcal Electronic energy + Delta-G solvation = -16993.072226 eV Core-core repulsion = 14144.603925 eV Total energy + Delta-G solvation = -2848.468302 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36955 -38.50592 -37.38233 -36.19114 -34.02710 -32.25199 -31.81702 -29.71388 -28.51965 -26.79786 -24.16632 -23.49639 -22.06438 -20.67204 -19.67341 -18.27469 -17.42584 -16.70743 -16.13174 -15.58409 -15.42609 -15.26797 -14.95241 -14.60202 -14.43136 -14.41371 -14.14137 -13.74448 -13.30561 -13.02350 -12.63709 -12.57455 -12.49692 -12.39080 -12.16719 -11.88713 -11.76067 -11.67388 -11.18774 -10.91802 -10.46635 -9.99658 -9.90792 -8.89621 -8.38474 -6.44516 -0.15557 0.38396 1.17956 1.47257 1.51901 1.55621 1.72228 2.13435 2.44659 2.83675 2.94466 3.62430 3.85187 3.98528 4.21390 4.34371 4.37576 4.48181 4.56203 4.64017 4.74315 4.78736 4.81424 4.96166 5.03104 5.07119 5.26678 5.29189 5.44772 5.49999 5.63364 5.82414 5.93828 5.98159 6.21048 6.66315 7.29792 7.65326 8.53441 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.003675 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.154120 B = 7617.711961 C = 8180.573012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.045 3.955 3 N -0.240 5.240 4 N -0.636 5.636 5 C 0.283 3.717 6 H 0.026 0.974 7 C -0.150 4.150 8 C -0.626 4.626 9 H 0.028 0.972 10 C 0.000 4.000 11 N -0.921 5.921 12 Si 1.073 2.927 13 H -0.283 1.283 14 H -0.270 1.270 15 H -0.245 1.245 16 C -0.024 4.024 17 C -0.090 4.090 18 C -0.106 4.106 19 C -0.043 4.043 20 Cl -0.071 7.071 21 C -0.112 4.112 22 C -0.099 4.099 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.049 0.951 26 H 0.374 0.626 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.258 0.742 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.145 0.855 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 -23.136 -3.849 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 N -0.051 5.051 4 N -0.373 5.373 5 C 0.178 3.822 6 H 0.044 0.956 7 C -0.209 4.209 8 C -0.664 4.664 9 H 0.046 0.954 10 C -0.201 4.201 11 N -0.555 5.555 12 Si 0.894 3.106 13 H -0.208 1.208 14 H -0.195 1.195 15 H -0.169 1.169 16 C -0.026 4.026 17 C -0.111 4.111 18 C -0.124 4.124 19 C -0.071 4.071 20 Cl -0.042 7.042 21 C -0.131 4.131 22 C -0.119 4.119 23 H 0.102 0.898 24 H 0.122 0.878 25 H 0.068 0.932 26 H 0.213 0.787 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.179 0.821 32 H 0.177 0.823 33 H 0.163 0.837 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.682 -21.494 -3.579 22.519 hybrid contribution -2.739 -0.828 -0.056 2.862 sum 2.943 -22.322 -3.635 22.807 Atomic orbital electron populations 1.21107 0.91140 1.03772 1.03565 1.22980 0.94604 0.90738 1.06089 1.74039 1.28717 0.93199 1.09095 1.48358 1.05955 0.99979 1.82996 1.18462 0.92197 0.78938 0.92607 0.95638 1.22412 0.99902 1.00127 0.98479 1.22214 1.01664 0.99056 1.43483 0.95400 1.26964 1.10110 0.91122 0.91944 1.70973 1.05643 1.31718 1.47125 0.83685 0.70899 0.76563 0.79435 1.20819 1.19506 1.16939 1.18496 0.92816 0.90773 1.00516 1.21436 1.01478 0.89595 0.98553 1.21204 0.91608 0.99722 0.99911 1.21157 0.93121 0.87009 1.05799 1.98364 1.76882 1.32007 1.96936 1.21101 1.01201 0.90220 1.00579 1.21349 0.93756 0.98217 0.98610 0.89778 0.87756 0.93244 0.78728 0.92893 0.93653 0.94132 0.93319 0.82142 0.82272 0.83718 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.04 71.24 0.64 -2.67 16 2 C 0.04 1.36 7.10 45.31 0.32 1.68 16 3 N -0.24 -9.14 10.61 -42.82 -0.45 -9.59 16 4 N -0.64 -27.27 5.95 -172.52 -1.03 -28.30 16 5 C 0.28 13.59 2.83 44.25 0.13 13.71 16 6 H 0.03 1.27 6.72 -2.39 -0.02 1.25 16 7 C -0.15 -6.57 9.24 71.98 0.67 -5.91 16 8 C -0.63 -34.95 8.96 25.60 0.23 -34.72 16 9 H 0.03 1.69 8.01 -2.91 -0.02 1.67 16 10 C 0.00 0.00 5.19 84.66 0.44 0.44 16 11 N -0.92 -55.90 13.70 21.45 0.29 -55.61 16 12 Si 1.07 48.90 26.44 68.60 1.81 50.72 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.25 -9.99 6.14 99.48 0.61 -9.38 16 16 C -0.02 -0.60 5.87 -20.14 -0.12 -0.72 16 17 C -0.09 -1.67 9.36 22.54 0.21 -1.46 16 18 C -0.11 -1.78 9.81 22.25 0.22 -1.56 16 19 C -0.04 -0.83 6.32 22.38 0.14 -0.69 16 20 Cl -0.07 -1.22 28.95 -2.72 -0.08 -1.30 16 21 C -0.11 -2.39 9.81 22.25 0.22 -2.17 16 22 C -0.10 -2.53 9.58 22.55 0.22 -2.32 16 23 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.10 1.81 6.46 -2.39 -0.02 1.80 16 25 H 0.05 1.39 6.35 -2.39 -0.02 1.38 16 26 H 0.37 15.49 6.34 -213.32 -1.35 14.14 16 27 H 0.05 2.34 5.47 -2.39 -0.01 2.32 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.26 15.79 8.73 -92.71 -0.81 14.98 16 31 H 0.16 2.07 6.35 -2.91 -0.02 2.05 16 32 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.13 3.57 7.55 -2.91 -0.02 3.55 16 Total: -1.00 -63.69 301.65 3.49 -60.20 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.37 Total: 20.25 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 3.31 Total: -36.37 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -1.19 Total: -93.50 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 1.81 Total: 50.72 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -63.69 3.49 -60.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.182 kcal (2) G-P(sol) polarization free energy of solvation -63.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds