Wall clock time and date at job start Mon Mar 30 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29748 * 119.99538 * 2 1 4 4 N 1.40100 * 120.00029 * 359.97438 * 3 2 1 5 5 C 1.46500 * 119.99595 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47523 * 30.00406 * 5 4 3 7 7 C 1.52995 * 109.47308 * 269.99845 * 5 4 3 8 8 C 1.50697 * 109.46780 * 150.00074 * 5 4 3 9 9 H 1.08002 * 120.00435 * 5.46038 * 8 5 4 10 10 C 1.37884 * 120.00081 * 185.46390 * 8 5 4 11 11 N 1.31509 * 119.99781 * 9.55519 * 10 8 5 12 12 Si 1.86797 * 119.99947 * 189.55906 * 10 8 5 13 13 H 1.48508 * 109.47367 * 84.99094 * 12 10 8 14 14 H 1.48502 * 109.47176 * 204.98660 * 12 10 8 15 15 H 1.48498 * 109.47188 * 324.99267 * 12 10 8 16 16 C 1.47479 * 120.00288 * 180.02562 * 2 1 3 17 17 C 1.39691 * 120.16198 * 359.97438 * 16 2 1 18 18 C 1.37917 * 119.85146 * 180.02562 * 17 16 2 19 19 C 1.38389 * 120.18546 * 0.02562 * 18 17 16 20 20 C 1.38321 * 120.32987 * 0.02562 * 19 18 17 21 21 C 1.38081 * 120.14146 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 120.09002 * 179.97438 * 21 20 19 23 23 H 1.09008 * 109.47002 * 269.99516 * 1 2 3 24 24 H 1.08994 * 109.47373 * 29.99881 * 1 2 3 25 25 H 1.09009 * 109.46984 * 150.00360 * 1 2 3 26 26 H 0.96995 * 119.99983 * 359.97438 * 4 3 2 27 27 H 1.09004 * 109.47059 * 183.62281 * 7 5 4 28 28 H 1.08997 * 109.47603 * 303.62590 * 7 5 4 29 29 H 1.09007 * 109.46932 * 63.62706 * 7 5 4 30 30 H 0.97006 * 119.99788 * 180.02562 * 11 10 8 31 31 H 1.08003 * 120.06993 * 359.97438 * 17 16 2 32 32 H 1.08004 * 119.90000 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.83726 * 180.02562 * 19 18 17 34 34 H 1.08007 * 119.92752 * 179.72306 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1237 0.0000 4 7 1.4551 2.3369 -0.0005 5 6 2.1876 3.6057 0.0000 6 1 3.1404 3.4754 -0.5131 7 6 2.4414 4.0474 1.4427 8 6 1.3736 4.6559 -0.7110 9 1 0.3718 4.4286 -1.0444 10 6 1.9079 5.9069 -0.9360 11 7 3.1830 6.1289 -0.7031 12 14 0.8204 7.2864 -1.5714 13 1 0.1334 7.9413 -0.4293 14 1 1.6550 8.2856 -2.2858 15 1 -0.1918 6.7291 -2.5042 16 6 2.2445 -1.2772 -0.0006 17 6 1.5495 -2.4889 -0.0006 18 6 2.2456 -3.6795 -0.0006 19 6 3.6295 -3.6765 0.0000 20 6 4.3253 -2.4810 0.0010 21 6 3.6421 -1.2811 0.0010 22 17 4.5167 0.2185 0.0031 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5138 26 1 0.4851 2.3369 -0.0013 27 1 2.9293 5.0222 1.4437 28 1 1.4923 4.1155 1.9742 29 1 3.0838 3.3192 1.9379 30 1 3.5588 7.0092 -0.8610 31 1 0.4695 -2.4934 0.0003 32 1 1.7091 -4.6169 -0.0010 33 1 4.1690 -4.6121 -0.0005 34 1 5.4054 -2.4862 0.0060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771882861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:22 Heat of formation + Delta-G solvation = 44.714982 kcal Electronic energy + Delta-G solvation = -17418.183002 eV Core-core repulsion = 14570.179947 eV Total energy + Delta-G solvation = -2848.003055 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.25830 -38.26964 -37.10125 -36.15912 -33.81462 -31.97511 -31.43627 -29.64997 -28.34902 -27.22557 -24.20766 -23.22137 -22.28825 -20.49515 -18.90161 -17.82465 -17.20006 -16.95078 -16.20363 -15.57855 -15.36362 -15.24045 -14.70812 -14.60667 -14.42469 -14.06960 -13.86059 -13.29639 -12.92884 -12.85942 -12.70755 -12.43095 -12.35907 -12.25762 -12.18345 -12.11679 -11.98932 -11.90344 -11.14358 -10.57513 -10.21450 -10.02485 -9.60734 -8.34995 -8.16808 -6.34290 0.03168 0.37915 1.41168 1.42539 1.48628 1.52106 1.75479 2.23802 2.49443 2.91904 3.09646 3.67750 3.93697 4.20041 4.31671 4.46191 4.50238 4.59344 4.69320 4.73513 4.77149 4.92275 5.05479 5.07166 5.15313 5.28510 5.42458 5.47828 5.56116 5.60357 5.72263 5.86212 5.99064 6.20452 6.43960 6.86523 7.36170 7.84914 8.86882 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033646 B = 0.004730 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.984732 B = 5917.955370 C = 6454.761514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.015 3.985 3 N -0.212 5.212 4 N -0.638 5.638 5 C 0.309 3.691 6 H 0.000 1.000 7 C -0.127 4.127 8 C -0.549 4.549 9 H 0.061 0.939 10 C 0.021 3.979 11 N -0.916 5.916 12 Si 0.967 3.033 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.268 1.268 16 C -0.029 4.029 17 C -0.099 4.099 18 C -0.110 4.110 19 C -0.106 4.106 20 C -0.124 4.124 21 C -0.053 4.053 22 Cl -0.067 7.067 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.372 0.628 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.018 0.982 30 H 0.266 0.734 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 -20.319 1.996 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.173 4.173 3 N -0.023 5.023 4 N -0.376 5.376 5 C 0.205 3.795 6 H 0.018 0.982 7 C -0.187 4.187 8 C -0.588 4.588 9 H 0.079 0.921 10 C -0.180 4.180 11 N -0.554 5.554 12 Si 0.792 3.208 13 H -0.195 1.195 14 H -0.209 1.209 15 H -0.193 1.193 16 C -0.032 4.032 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.082 4.082 22 Cl -0.038 7.038 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.210 0.790 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.056 -19.384 1.987 19.594 hybrid contribution -1.067 1.292 -0.289 1.700 sum -3.123 -18.092 1.698 18.438 Atomic orbital electron populations 1.21029 0.90697 1.03733 1.03308 1.23069 0.94912 0.90905 1.08420 1.74895 1.27256 0.93158 1.07028 1.48699 1.05917 1.00581 1.82370 1.18032 0.91349 0.78098 0.92016 0.98167 1.21925 0.98708 0.99680 0.98354 1.21492 1.01113 0.97293 1.38857 0.92078 1.25719 0.96045 1.00924 0.95302 1.70108 1.12819 1.23323 1.49166 0.85437 0.78520 0.78349 0.78505 1.19470 1.20895 1.19255 1.18453 0.90524 0.92167 1.02022 1.21534 1.01426 0.89905 0.99055 1.21556 0.94325 0.98711 0.98149 1.21566 0.94869 0.97687 0.98347 1.21258 1.01146 0.90585 1.01226 1.21504 0.92491 0.88204 1.05960 1.98426 1.75719 1.33184 1.96442 0.90115 0.92876 0.88028 0.78959 0.93217 0.94352 0.96312 0.92482 0.82526 0.81580 0.81941 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.03 71.24 0.64 -2.75 16 2 C 0.02 0.52 7.10 45.31 0.32 0.84 16 3 N -0.21 -9.14 8.07 -42.82 -0.35 -9.49 16 4 N -0.64 -29.73 5.95 -172.53 -1.03 -30.75 16 5 C 0.31 16.76 3.10 44.24 0.14 16.90 16 6 H 0.00 0.02 8.09 -2.39 -0.02 0.00 16 7 C -0.13 -6.55 9.39 71.98 0.68 -5.87 16 8 C -0.55 -30.64 8.67 25.60 0.22 -30.42 16 9 H 0.06 3.30 7.78 -2.91 -0.02 3.27 16 10 C 0.02 1.15 5.17 84.66 0.44 1.58 16 11 N -0.92 -53.88 12.16 21.45 0.26 -53.62 16 12 Si 0.97 43.40 29.55 68.60 2.03 45.43 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 C -0.03 -0.85 5.87 -20.12 -0.12 -0.97 16 17 C -0.10 -1.98 9.36 22.54 0.21 -1.77 16 18 C -0.11 -1.64 10.03 22.23 0.22 -1.42 16 19 C -0.11 -1.71 10.04 22.33 0.22 -1.49 16 20 C -0.12 -2.86 9.82 22.25 0.22 -2.64 16 21 C -0.05 -1.63 6.35 22.60 0.14 -1.49 16 22 Cl -0.07 -2.56 25.74 -2.72 -0.07 -2.63 16 23 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 24 H 0.05 1.55 6.35 -2.39 -0.02 1.54 16 25 H 0.10 1.96 6.48 -2.38 -0.02 1.95 16 26 H 0.37 15.86 6.34 -213.33 -1.35 14.50 16 27 H 0.05 2.73 6.83 -2.38 -0.02 2.71 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 31 H 0.16 2.27 6.36 -2.91 -0.02 2.25 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -67.95 301.86 3.95 -64.00 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -0.24 Total: 16.54 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 3.34 Total: -29.49 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -1.11 Total: -93.86 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.07 Total: -2.63 kcal Total: -67.95 3.95 -64.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.720 kcal (2) G-P(sol) polarization free energy of solvation -67.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds