Wall clock time and date at job start Mon Mar 30 2020 06:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29749 * 120.00418 * 2 1 4 4 N 1.40099 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.46495 * 120.00125 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47085 * 330.00541 * 5 4 3 7 7 C 1.53002 * 109.46722 * 90.00317 * 5 4 3 8 8 C 1.50703 * 109.47459 * 210.00012 * 5 4 3 9 9 H 1.08005 * 119.99501 * 359.97438 * 8 5 4 10 10 C 1.37875 * 120.00278 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99559 * 359.97438 * 10 8 5 12 12 Si 1.86802 * 120.00076 * 180.02562 * 10 8 5 13 13 H 1.48493 * 109.47013 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.46967 * 119.99735 * 12 10 8 15 15 H 1.48500 * 109.46998 * 239.99620 * 12 10 8 16 16 C 1.47484 * 119.99996 * 179.97438 * 2 1 3 17 17 C 1.39689 * 120.16100 * 359.96341 * 16 2 1 18 18 C 1.37913 * 119.85617 * 180.02562 * 17 16 2 19 19 C 1.38405 * 120.18034 * 359.97438 * 18 17 16 20 20 C 1.38317 * 120.32889 * 0.02562 * 19 18 17 21 21 C 1.38083 * 120.14546 * 359.97438 * 20 19 18 22 22 Cl 1.73594 * 120.09463 * 180.02562 * 21 20 19 23 23 H 1.09005 * 109.47642 * 270.00532 * 1 2 3 24 24 H 1.09007 * 109.46918 * 30.00391 * 1 2 3 25 25 H 1.09000 * 109.47612 * 150.00200 * 1 2 3 26 26 H 0.97008 * 119.99619 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.47343 * 299.99465 * 7 5 4 28 28 H 1.09000 * 109.47598 * 60.00112 * 7 5 4 29 29 H 1.09004 * 109.46926 * 180.02562 * 7 5 4 30 30 H 0.97004 * 119.99379 * 180.02562 * 11 10 8 31 31 H 1.08005 * 120.07134 * 359.97438 * 17 16 2 32 32 H 1.08001 * 119.91128 * 180.27248 * 18 17 16 33 33 H 1.08005 * 119.83221 * 180.02562 * 19 18 17 34 34 H 1.08004 * 119.92721 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1557 1.1236 0.0000 4 7 1.4553 2.3369 -0.0005 5 6 2.1878 3.6056 0.0000 6 1 3.1398 3.4752 0.5145 7 6 2.4438 4.0472 -1.4423 8 6 1.3729 4.6560 0.7098 9 1 0.4057 4.4037 1.1191 10 6 1.8614 5.9391 0.8357 11 7 3.0388 6.2463 0.3367 12 14 0.8515 7.2408 1.7161 13 1 -0.4261 6.6447 2.1822 14 1 1.6138 7.7534 2.8828 15 1 0.5639 8.3594 0.7826 16 6 2.2443 -1.2773 0.0006 17 6 1.5493 -2.4890 0.0019 18 6 2.2452 -3.6796 0.0029 19 6 3.6292 -3.6766 0.0022 20 6 4.3251 -2.4812 0.0009 21 6 3.6420 -1.2812 -0.0002 22 17 4.5167 0.2183 -0.0025 23 1 -0.3634 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 0.4852 2.3369 -0.0005 27 1 3.0333 3.2876 -1.9557 28 1 1.4918 4.1776 -1.9569 29 1 2.9892 4.9910 -1.4419 30 1 3.3826 7.1489 0.4257 31 1 0.4693 -2.4933 0.0029 32 1 1.7087 -4.6170 -0.0005 33 1 4.1686 -4.6124 0.0026 34 1 5.4051 -2.4865 0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771882863.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:25 Heat of formation + Delta-G solvation = 62.418050 kcal Electronic energy + Delta-G solvation = -17421.964778 eV Core-core repulsion = 14574.729385 eV Total energy + Delta-G solvation = -2847.235392 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.20619 -36.81270 -35.86966 -34.41176 -32.13165 -30.75320 -30.12952 -28.38130 -26.74547 -25.20218 -23.01668 -22.23538 -20.46238 -19.10740 -17.39587 -16.47600 -15.79869 -15.27074 -14.90928 -14.24213 -14.08732 -13.97573 -13.71521 -13.18726 -12.88961 -12.56468 -12.05072 -11.81997 -11.44522 -11.28573 -11.22137 -11.09398 -11.04957 -10.77185 -10.74309 -10.45451 -10.23617 -10.16354 -9.13281 -8.93461 -8.79134 -8.56727 -8.46910 -6.74122 -6.13706 -4.21992 1.10408 1.33985 2.65478 2.97343 3.23067 3.30731 3.33868 3.81860 3.95374 4.36386 4.78841 4.92317 5.02659 5.18887 5.28478 5.45719 5.53182 5.69369 5.75214 5.84588 6.00765 6.18937 6.29810 6.45823 6.57599 6.75619 6.88581 7.01405 7.04028 7.16381 7.58250 7.78416 7.86495 8.15360 8.30482 8.85782 9.32943 9.44904 10.92114 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033497 B = 0.004717 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.707243 B = 5934.619307 C = 6452.155763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.015 4.015 3 N -0.158 5.158 4 N -0.617 5.617 5 C 0.297 3.703 6 H 0.042 0.958 7 C -0.150 4.150 8 C -0.530 4.530 9 H 0.060 0.940 10 C 0.067 3.933 11 N -0.885 5.885 12 Si 0.902 3.098 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.283 1.283 16 C 0.014 3.986 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.112 4.112 21 C -0.032 4.032 22 Cl -0.029 7.029 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.368 0.632 27 H 0.013 0.987 28 H 0.025 0.975 29 H 0.089 0.911 30 H 0.264 0.736 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -17.197 -1.316 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.200 4.200 3 N 0.026 4.974 4 N -0.354 5.354 5 C 0.195 3.805 6 H 0.060 0.940 7 C -0.209 4.209 8 C -0.569 4.569 9 H 0.078 0.922 10 C -0.136 4.136 11 N -0.523 5.523 12 Si 0.730 3.270 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.209 1.209 16 C 0.011 3.989 17 C -0.131 4.131 18 C -0.136 4.136 19 C -0.144 4.144 20 C -0.131 4.131 21 C -0.062 4.062 22 Cl 0.001 6.999 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.206 0.794 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.037 -16.232 -1.333 16.287 hybrid contribution -1.626 0.676 0.419 1.810 sum -1.589 -15.556 -0.914 15.663 Atomic orbital electron populations 1.20917 0.93061 1.02515 1.02133 1.22214 0.92837 0.90873 1.14105 1.74810 1.26783 0.92964 1.02833 1.49307 1.06350 1.00811 1.78903 1.18540 0.92762 0.76288 0.92958 0.94008 1.22194 0.99177 1.01797 0.97721 1.21272 1.04497 0.94395 1.36743 0.92195 1.24854 0.95119 0.98229 0.95404 1.69906 1.17387 1.20225 1.44781 0.86381 0.80091 0.81241 0.79329 1.19780 1.20832 1.20852 1.18218 0.90410 0.91774 0.98511 1.21171 1.00066 0.90782 1.01086 1.21036 0.94266 0.97800 1.00489 1.21049 0.94322 0.97323 1.01667 1.20986 1.00216 0.90812 1.01111 1.21196 0.92060 0.88692 1.04217 1.98435 1.74869 1.30506 1.96100 0.91574 0.91866 0.91417 0.79400 0.96806 0.95593 0.89210 0.92636 0.85105 0.85794 0.85734 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.03 36.00 0.33 -1.48 16 2 C -0.01 -0.26 7.10 -79.71 -0.57 -0.82 16 3 N -0.16 -3.29 8.07 35.11 0.28 -3.00 16 4 N -0.62 -13.77 5.95 -5.88 -0.04 -13.81 16 5 C 0.30 7.63 3.23 -69.08 -0.22 7.41 16 6 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 7 C -0.15 -3.74 9.29 37.16 0.35 -3.39 16 8 C -0.53 -14.31 8.74 -34.44 -0.30 -14.61 16 9 H 0.06 1.59 7.79 -52.48 -0.41 1.18 16 10 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 11 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 12 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.01 0.22 5.87 -105.02 -0.62 -0.40 16 17 C -0.11 -1.34 9.36 -39.16 -0.37 -1.70 16 18 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 19 C -0.12 -1.30 10.04 -39.49 -0.40 -1.70 16 20 C -0.11 -1.42 9.82 -39.61 -0.39 -1.81 16 21 C -0.03 -0.51 6.35 -39.07 -0.25 -0.76 16 22 Cl -0.03 -0.52 25.74 -51.86 -1.33 -1.85 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.94 6.35 -51.92 -0.33 0.61 16 25 H 0.07 0.77 6.48 -51.93 -0.34 0.44 16 26 H 0.37 7.63 6.36 -182.59 -1.16 6.47 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.13 1.30 6.36 -52.48 -0.33 0.97 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -29.07 300.55 -8.86 -37.93 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.98 Total: 3.70 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.93 Total: -19.15 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.88 Total: -41.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.33 Total: -1.85 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.07 -8.86 -37.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882863.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.347 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds