Wall clock time and date at job start Mon Mar 30 2020 06:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29749 * 120.00418 * 2 1 4 4 N 1.40099 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.46495 * 120.00125 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47085 * 330.00541 * 5 4 3 7 7 C 1.53002 * 109.46722 * 90.00317 * 5 4 3 8 8 C 1.50703 * 109.47459 * 210.00012 * 5 4 3 9 9 H 1.08005 * 119.99501 * 359.97438 * 8 5 4 10 10 C 1.37875 * 120.00278 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99559 * 359.97438 * 10 8 5 12 12 Si 1.86802 * 120.00076 * 180.02562 * 10 8 5 13 13 H 1.48493 * 109.47013 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.46967 * 119.99735 * 12 10 8 15 15 H 1.48500 * 109.46998 * 239.99620 * 12 10 8 16 16 C 1.47484 * 119.99996 * 179.97438 * 2 1 3 17 17 C 1.39689 * 120.16100 * 359.96341 * 16 2 1 18 18 C 1.37913 * 119.85617 * 180.02562 * 17 16 2 19 19 C 1.38405 * 120.18034 * 359.97438 * 18 17 16 20 20 C 1.38317 * 120.32889 * 0.02562 * 19 18 17 21 21 C 1.38083 * 120.14546 * 359.97438 * 20 19 18 22 22 Cl 1.73594 * 120.09463 * 180.02562 * 21 20 19 23 23 H 1.09005 * 109.47642 * 270.00532 * 1 2 3 24 24 H 1.09007 * 109.46918 * 30.00391 * 1 2 3 25 25 H 1.09000 * 109.47612 * 150.00200 * 1 2 3 26 26 H 0.97008 * 119.99619 * 0.02562 * 4 3 2 27 27 H 1.09001 * 109.47343 * 299.99465 * 7 5 4 28 28 H 1.09000 * 109.47598 * 60.00112 * 7 5 4 29 29 H 1.09004 * 109.46926 * 180.02562 * 7 5 4 30 30 H 0.97004 * 119.99379 * 180.02562 * 11 10 8 31 31 H 1.08005 * 120.07134 * 359.97438 * 17 16 2 32 32 H 1.08001 * 119.91128 * 180.27248 * 18 17 16 33 33 H 1.08005 * 119.83221 * 180.02562 * 19 18 17 34 34 H 1.08004 * 119.92721 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1557 1.1236 0.0000 4 7 1.4553 2.3369 -0.0005 5 6 2.1878 3.6056 0.0000 6 1 3.1398 3.4752 0.5145 7 6 2.4438 4.0472 -1.4423 8 6 1.3729 4.6560 0.7098 9 1 0.4057 4.4037 1.1191 10 6 1.8614 5.9391 0.8357 11 7 3.0388 6.2463 0.3367 12 14 0.8515 7.2408 1.7161 13 1 -0.4261 6.6447 2.1822 14 1 1.6138 7.7534 2.8828 15 1 0.5639 8.3594 0.7826 16 6 2.2443 -1.2773 0.0006 17 6 1.5493 -2.4890 0.0019 18 6 2.2452 -3.6796 0.0029 19 6 3.6292 -3.6766 0.0022 20 6 4.3251 -2.4812 0.0009 21 6 3.6420 -1.2812 -0.0002 22 17 4.5167 0.2183 -0.0025 23 1 -0.3634 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5138 26 1 0.4852 2.3369 -0.0005 27 1 3.0333 3.2876 -1.9557 28 1 1.4918 4.1776 -1.9569 29 1 2.9892 4.9910 -1.4419 30 1 3.3826 7.1489 0.4257 31 1 0.4693 -2.4933 0.0029 32 1 1.7087 -4.6170 -0.0005 33 1 4.1686 -4.6124 0.0026 34 1 5.4051 -2.4865 0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771882863.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:24 Heat of formation + Delta-G solvation = 46.139845 kcal Electronic energy + Delta-G solvation = -17422.670654 eV Core-core repulsion = 14574.729385 eV Total energy + Delta-G solvation = -2847.941268 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26062 -38.27659 -37.10495 -36.19341 -33.80311 -31.94787 -31.41893 -29.63986 -28.31870 -27.26800 -24.20101 -23.22310 -22.26948 -20.49348 -18.90240 -17.83187 -17.21386 -16.96433 -16.20699 -15.56499 -15.37929 -15.23824 -14.73211 -14.62043 -14.45852 -14.07409 -13.76453 -13.19096 -12.95532 -12.89348 -12.71484 -12.39874 -12.32762 -12.26147 -12.16095 -12.12829 -11.99164 -11.92483 -11.08827 -10.60483 -10.22207 -10.02169 -9.60912 -8.33104 -8.16142 -6.35495 0.02866 0.37749 1.41007 1.41572 1.48255 1.53883 1.74914 2.23371 2.49316 2.91645 3.10610 3.67359 3.93430 4.19862 4.31313 4.45845 4.50066 4.59079 4.69611 4.73460 4.78656 4.95660 5.05422 5.11757 5.16068 5.29160 5.43485 5.47829 5.56158 5.61025 5.80555 5.89974 5.98884 6.20398 6.43467 6.85808 7.36396 7.84261 8.86994 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033497 B = 0.004717 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.707243 B = 5934.619307 C = 6452.155763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.015 3.985 3 N -0.211 5.211 4 N -0.638 5.638 5 C 0.311 3.689 6 H -0.004 1.004 7 C -0.133 4.133 8 C -0.546 4.546 9 H 0.061 0.939 10 C 0.018 3.982 11 N -0.915 5.915 12 Si 0.971 3.029 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.276 1.276 16 C -0.029 4.029 17 C -0.099 4.099 18 C -0.110 4.110 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.052 4.052 22 Cl -0.067 7.067 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.371 0.629 27 H 0.013 0.987 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.266 0.734 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.883 -20.477 -1.030 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.173 4.173 3 N -0.023 5.023 4 N -0.376 5.376 5 C 0.207 3.793 6 H 0.014 0.986 7 C -0.193 4.193 8 C -0.585 4.585 9 H 0.079 0.921 10 C -0.182 4.182 11 N -0.554 5.554 12 Si 0.796 3.204 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.201 1.201 16 C -0.032 4.032 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.081 4.081 22 Cl -0.038 7.038 23 H 0.096 0.904 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.210 0.790 27 H 0.032 0.968 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.677 -19.533 -1.052 19.633 hybrid contribution -1.066 1.244 0.326 1.671 sum -2.743 -18.289 -0.726 18.508 Atomic orbital electron populations 1.21024 0.90724 1.03794 1.03218 1.23068 0.94900 0.90914 1.08410 1.74886 1.27251 0.93146 1.07050 1.48715 1.05926 1.00590 1.82380 1.18029 0.91010 0.78038 0.92226 0.98563 1.21997 0.98890 1.00499 0.97903 1.21559 1.04667 0.95182 1.37092 0.92113 1.25724 0.96140 1.00313 0.96017 1.70040 1.18854 1.20767 1.45712 0.85314 0.78638 0.78398 0.78075 1.19004 1.20617 1.20125 1.18452 0.90534 0.92145 1.02038 1.21531 1.01424 0.89911 0.99059 1.21559 0.94331 0.98703 0.98141 1.21571 0.94862 0.97696 0.98332 1.21257 1.01152 0.90572 1.01216 1.21501 0.92474 0.88202 1.05965 1.98424 1.75710 1.33199 1.96442 0.90429 0.92755 0.87885 0.78979 0.96790 0.95127 0.91428 0.92473 0.82542 0.81579 0.81929 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.03 71.23 0.64 -2.77 16 2 C 0.02 0.53 7.10 45.30 0.32 0.85 16 3 N -0.21 -9.15 8.07 -42.83 -0.35 -9.50 16 4 N -0.64 -29.89 5.95 -172.53 -1.03 -30.92 16 5 C 0.31 16.94 3.23 44.25 0.14 17.08 16 6 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 7 C -0.13 -7.04 9.29 71.98 0.67 -6.37 16 8 C -0.55 -30.54 8.74 25.60 0.22 -30.32 16 9 H 0.06 3.30 7.79 -2.91 -0.02 3.27 16 10 C 0.02 1.01 5.30 84.65 0.45 1.45 16 11 N -0.92 -53.22 11.32 21.45 0.24 -52.97 16 12 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 13 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 16 C -0.03 -0.85 5.87 -20.12 -0.12 -0.97 16 17 C -0.10 -1.98 9.36 22.54 0.21 -1.77 16 18 C -0.11 -1.64 10.03 22.23 0.22 -1.41 16 19 C -0.11 -1.70 10.04 22.33 0.22 -1.48 16 20 C -0.12 -2.84 9.82 22.25 0.22 -2.62 16 21 C -0.05 -1.62 6.35 22.60 0.14 -1.48 16 22 Cl -0.07 -2.55 25.74 -2.72 -0.07 -2.62 16 23 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 24 H 0.05 1.57 6.35 -2.38 -0.02 1.56 16 25 H 0.10 1.97 6.48 -2.39 -0.02 1.95 16 26 H 0.37 16.00 6.36 -213.31 -1.36 14.64 16 27 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 3.83 6.07 -2.38 -0.01 3.81 16 30 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.16 2.27 6.36 -2.91 -0.02 2.25 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 34 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -67.49 300.55 3.94 -63.56 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.24 Total: 16.78 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 3.35 Total: -29.79 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -1.13 Total: -93.39 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.07 Total: -2.62 kcal Total: -67.49 3.94 -63.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882863.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.697 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds