Wall clock time and date at job start Mon Mar 30 2020 06:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29748 * 120.00095 * 2 1 4 4 N 1.40100 * 119.99745 * 0.02562 * 3 2 1 5 5 C 1.46500 * 119.99636 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46923 * 329.99243 * 5 4 3 7 7 C 1.52998 * 109.47382 * 89.99997 * 5 4 3 8 8 C 1.50698 * 109.46735 * 209.99456 * 5 4 3 9 9 H 1.08003 * 120.00072 * 356.71410 * 8 5 4 10 10 C 1.37875 * 120.00245 * 176.70742 * 8 5 4 11 11 N 1.31514 * 120.00083 * 352.37159 * 10 8 5 12 12 Si 1.86802 * 120.00225 * 172.63566 * 10 8 5 13 13 H 1.48498 * 109.47368 * 264.80507 * 12 10 8 14 14 H 1.48493 * 109.46898 * 24.80867 * 12 10 8 15 15 H 1.48505 * 109.46843 * 144.80597 * 12 10 8 16 16 C 1.47498 * 119.99918 * 180.02562 * 2 1 3 17 17 C 1.39697 * 120.14848 * 359.72395 * 16 2 1 18 18 C 1.37923 * 119.86572 * 179.74594 * 17 16 2 19 19 C 1.38374 * 120.17019 * 0.50789 * 18 17 16 20 20 C 1.38459 * 120.30195 * 359.76771 * 19 18 17 21 21 Cl 1.73591 * 119.93484 * 179.97438 * 20 19 18 22 22 C 1.38077 * 120.12740 * 359.97438 * 20 19 18 23 23 H 1.09007 * 109.46975 * 89.99811 * 1 2 3 24 24 H 1.08998 * 109.46956 * 209.99498 * 1 2 3 25 25 H 1.08999 * 109.46732 * 329.99866 * 1 2 3 26 26 H 0.96999 * 120.00200 * 359.97438 * 4 3 2 27 27 H 1.08997 * 109.47717 * 58.23337 * 7 5 4 28 28 H 1.08995 * 109.47232 * 178.23571 * 7 5 4 29 29 H 1.09002 * 109.46592 * 298.23188 * 7 5 4 30 30 H 0.96998 * 120.00505 * 180.27043 * 11 10 8 31 31 H 1.07998 * 120.07126 * 359.97438 * 17 16 2 32 32 H 1.07999 * 119.91207 * 180.23439 * 18 17 16 33 33 H 1.07995 * 119.84598 * 179.74255 * 19 18 17 34 34 H 1.08007 * 120.08387 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1236 0.0000 4 7 1.4552 2.3369 0.0005 5 6 2.1878 3.6056 0.0000 6 1 3.1405 3.4752 0.5132 7 6 2.4417 4.0473 -1.4427 8 6 1.3738 4.6559 0.7109 9 1 0.3853 4.4180 1.0754 10 6 1.8909 5.9205 0.8962 11 7 3.1453 6.1694 0.5895 12 14 0.8120 7.2784 1.5901 13 1 0.2321 8.0686 0.4745 14 1 -0.2833 6.6785 2.3934 15 1 1.6296 8.1676 2.4538 16 6 2.2445 -1.2774 -0.0006 17 6 1.5491 -2.4890 0.0047 18 6 2.2446 -3.6800 -0.0012 19 6 3.6283 -3.6774 -0.0017 20 6 4.3246 -2.4806 -0.0011 21 17 6.0605 -2.4884 -0.0011 22 6 3.6409 -1.2810 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5139 26 1 0.4852 2.3369 0.0005 27 1 1.4902 4.1474 -1.9649 28 1 2.9591 5.0067 -1.4432 29 1 3.0568 3.3025 -1.9477 30 1 3.5103 7.0580 0.7235 31 1 0.4692 -2.4931 0.0096 32 1 1.7077 -4.6171 -0.0009 33 1 4.1676 -4.6130 -0.0021 34 1 4.1848 -0.3478 -0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:30 Heat of formation + Delta-G solvation = 49.986391 kcal Electronic energy + Delta-G solvation = -17026.123101 eV Core-core repulsion = 14178.348631 eV Total energy + Delta-G solvation = -2847.774469 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.28709 -37.03031 -36.28506 -34.41940 -32.13773 -30.85422 -30.32195 -28.42255 -26.84226 -25.21822 -23.14191 -22.31821 -20.55369 -19.16752 -17.48867 -16.44804 -15.79080 -15.29866 -15.06185 -14.50804 -14.15688 -14.02715 -13.64936 -13.25653 -13.09823 -12.59131 -12.20742 -11.88394 -11.58214 -11.56122 -11.39899 -11.36880 -11.05492 -10.83156 -10.75944 -10.55351 -10.32526 -10.19611 -9.55813 -9.14711 -8.91703 -8.70462 -8.51449 -6.84858 -6.19034 -4.25163 1.01952 1.30217 2.18740 2.84704 3.21770 3.28917 3.30931 3.71815 3.91700 4.33451 4.75913 4.89479 5.10558 5.14773 5.19339 5.42678 5.48143 5.54493 5.76152 5.86716 5.92235 6.15044 6.32767 6.39626 6.51298 6.68456 6.85383 6.90419 6.95391 7.05057 7.51314 7.70363 7.73017 8.09566 8.20017 8.81342 9.22919 9.40768 10.88745 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026340 B = 0.004009 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.755929 B = 6982.488165 C = 7735.613459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.001 3.999 3 N -0.185 5.185 4 N -0.614 5.614 5 C 0.293 3.707 6 H 0.047 0.953 7 C -0.145 4.145 8 C -0.534 4.534 9 H 0.060 0.940 10 C 0.069 3.931 11 N -0.883 5.883 12 Si 0.900 3.100 13 H -0.279 1.279 14 H -0.274 1.274 15 H -0.284 1.284 16 C 0.019 3.981 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.126 4.126 20 C -0.030 4.030 21 Cl -0.078 7.078 22 C -0.095 4.095 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.371 0.629 27 H 0.028 0.972 28 H 0.078 0.922 29 H 0.016 0.984 30 H 0.265 0.735 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -17.435 -1.846 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.185 4.185 3 N 0.000 5.000 4 N -0.351 5.351 5 C 0.191 3.809 6 H 0.065 0.935 7 C -0.205 4.205 8 C -0.573 4.573 9 H 0.078 0.922 10 C -0.134 4.134 11 N -0.520 5.520 12 Si 0.728 3.272 13 H -0.205 1.205 14 H -0.198 1.198 15 H -0.210 1.210 16 C 0.016 3.984 17 C -0.136 4.136 18 C -0.125 4.125 19 C -0.145 4.145 20 C -0.057 4.057 21 Cl -0.049 7.049 22 C -0.116 4.116 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.209 0.791 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.529 -16.615 -1.840 16.725 hybrid contribution -1.545 0.650 0.336 1.710 sum -2.074 -15.965 -1.504 16.169 Atomic orbital electron populations 1.20964 0.93012 1.02820 1.02191 1.22188 0.92811 0.90715 1.12798 1.74061 1.28538 0.93243 1.04120 1.49132 1.06379 1.00306 1.79331 1.18594 0.93199 0.76298 0.92794 0.93465 1.22134 0.98897 1.01348 0.98087 1.21187 1.02332 0.95551 1.38236 0.92195 1.24853 0.94939 0.98474 0.95155 1.69950 1.12442 1.22015 1.47622 0.86452 0.80304 0.81592 0.78895 1.20506 1.19839 1.21019 1.18200 0.91556 0.91106 0.97495 1.21302 1.00285 0.91247 1.00779 1.20921 0.93225 0.98100 1.00247 1.21000 0.94387 0.96544 1.02616 1.20823 0.84258 0.95080 1.05522 1.98361 1.10534 1.98964 1.97012 1.21297 0.93721 0.97372 0.99164 0.91488 0.91180 0.91699 0.79068 0.95327 0.90368 0.96449 0.92506 0.85165 0.85284 0.85435 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.04 36.01 0.33 -1.43 16 2 C 0.00 0.02 7.10 -79.70 -0.57 -0.54 16 3 N -0.18 -3.74 10.61 35.12 0.37 -3.36 16 4 N -0.61 -13.33 5.95 -5.88 -0.04 -13.37 16 5 C 0.29 7.38 3.12 -69.08 -0.22 7.16 16 6 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 7 C -0.15 -3.50 9.35 37.16 0.35 -3.15 16 8 C -0.53 -14.17 8.69 -34.44 -0.30 -14.47 16 9 H 0.06 1.56 7.78 -52.48 -0.41 1.15 16 10 C 0.07 1.86 5.21 -17.82 -0.09 1.76 16 11 N -0.88 -24.58 11.92 55.43 0.66 -23.92 16 12 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.02 0.28 5.87 -105.05 -0.62 -0.34 16 17 C -0.12 -1.33 9.36 -39.15 -0.37 -1.70 16 18 C -0.11 -1.07 10.03 -39.65 -0.40 -1.47 16 19 C -0.13 -1.38 9.82 -39.45 -0.39 -1.77 16 20 C -0.03 -0.40 6.31 -39.56 -0.25 -0.65 16 21 Cl -0.08 -0.99 28.95 -51.86 -1.50 -2.49 16 22 C -0.09 -1.44 9.36 -39.12 -0.37 -1.80 16 23 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 24 H 0.07 0.76 6.46 -51.93 -0.34 0.42 16 25 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16 26 H 0.37 7.43 6.35 -182.60 -1.16 6.27 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 2.02 6.60 -51.93 -0.34 1.68 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.13 1.21 6.35 -52.49 -0.33 0.87 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.14 2.40 7.55 -52.48 -0.40 2.00 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -28.02 306.01 -8.78 -36.80 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.98 Total: 4.58 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.88 Total: -18.39 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.00 Total: -40.65 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.02 -8.78 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.786 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds