Wall clock time and date at job start Mon Mar 30 2020 07:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47331 * 119.99847 * 2 1 3 5 5 H 1.08002 * 119.99517 * 119.99596 * 4 2 1 6 6 C 1.37873 * 120.00272 * 300.00611 * 4 2 1 7 7 N 1.31515 * 119.99610 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00099 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47227 * 89.99898 * 8 6 4 10 10 H 1.48502 * 109.46752 * 209.99454 * 8 6 4 11 11 H 1.48499 * 109.47215 * 329.99346 * 8 6 4 12 12 O 1.45203 * 109.47179 * 240.00489 * 2 1 3 13 13 C 1.34224 * 117.00308 * 89.99717 * 12 2 1 14 14 O 1.20820 * 120.00256 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99681 * 179.97438 * 13 12 2 16 16 H 1.08994 * 109.47120 * 15.00165 * 15 13 12 17 17 F 1.39894 * 109.46917 * 254.99738 * 15 13 12 18 18 C 1.53004 * 109.46503 * 135.00284 * 15 13 12 19 19 C 1.50706 * 109.46503 * 184.99692 * 18 15 13 20 20 C 1.38238 * 119.99727 * 90.00317 * 19 18 15 21 21 C 1.38234 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00207 * 270.01808 * 19 18 15 25 25 H 1.09002 * 109.46883 * 300.00059 * 1 2 3 26 26 H 1.09000 * 109.46767 * 59.99466 * 1 2 3 27 27 H 1.08994 * 109.47320 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99807 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47324 * 65.00281 * 18 15 13 30 30 H 1.08993 * 109.47443 * 304.99485 * 18 15 13 31 31 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 33 33 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 34 34 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 35 35 H 1.07999 * 120.00008 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3432 -0.9493 5.1119 11 1 2.4859 -2.5663 3.7119 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2519 -2.2504 15 6 2.7194 -0.5770 -3.5492 16 1 2.6072 -1.6588 -3.4785 17 9 4.0697 -0.2588 -3.7294 18 6 1.9097 -0.0569 -4.7387 19 6 2.3281 -0.7874 -5.9888 20 6 1.6834 -1.9537 -6.3562 21 6 2.0675 -2.6240 -7.5026 22 6 3.0958 -2.1278 -8.2817 23 6 3.7437 -0.9641 -7.9117 24 6 3.3566 -0.2913 -6.7678 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7094 1.1617 3.4844 29 1 2.0919 1.0104 -4.8635 30 1 0.8483 -0.2256 -4.5574 31 1 0.8802 -2.3416 -5.7473 32 1 1.5641 -3.5355 -7.7894 33 1 3.3961 -2.6518 -9.1771 34 1 4.5501 -0.5787 -8.5180 35 1 3.8607 0.6195 -6.4804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778303611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:21 Heat of formation + Delta-G solvation = -123.338804 kcal Electronic energy + Delta-G solvation = -19524.379357 eV Core-core repulsion = 16208.459817 eV Total energy + Delta-G solvation = -3315.919540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.76892 -39.66496 -39.25712 -35.95345 -33.80641 -33.31922 -31.02518 -30.06718 -29.16258 -25.42857 -25.10855 -22.70793 -21.91294 -21.00068 -19.82188 -17.72497 -16.92923 -16.80764 -16.35426 -15.82550 -15.50603 -15.07869 -14.91490 -14.54645 -14.40717 -13.55711 -13.42728 -13.20003 -12.82094 -12.60896 -12.27333 -12.09909 -11.86330 -11.28928 -11.26289 -11.22869 -11.08301 -11.06382 -10.90508 -10.43345 -10.32487 -9.74224 -9.63430 -9.05176 -8.98816 -8.85917 -8.54251 -6.22919 -4.30287 1.16299 1.27184 2.64362 3.18041 3.23441 3.29390 3.35527 3.66185 4.28172 4.47265 4.62722 4.70100 4.85487 4.89462 5.00005 5.01404 5.10321 5.36047 5.42185 5.46259 5.70222 5.72829 5.91123 5.94381 6.31197 6.36799 6.49010 6.53680 6.80086 6.81079 6.85672 7.02391 7.51558 7.64195 7.82791 8.05965 8.44526 8.79065 9.35271 10.84578 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040489 B = 0.003720 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.383372 B = 7525.211253 C = 7575.266114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.048 0.952 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.271 1.271 12 O -0.348 6.348 13 C 0.432 3.568 14 O -0.500 6.500 15 C 0.114 3.886 16 H 0.111 0.889 17 F -0.186 7.186 18 C -0.100 4.100 19 C -0.085 4.085 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.103 4.103 25 H 0.101 0.899 26 H 0.016 0.984 27 H 0.038 0.962 28 H 0.267 0.733 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -5.250 -18.339 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.264 6.264 13 C 0.272 3.728 14 O -0.389 6.389 15 C 0.076 3.924 16 H 0.129 0.871 17 F -0.167 7.167 18 C -0.137 4.137 19 C -0.085 4.085 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.121 4.121 25 H 0.120 0.880 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.552 -4.772 -18.118 18.800 hybrid contribution 0.324 -0.237 0.879 0.967 sum 1.877 -5.009 -17.239 18.049 Atomic orbital electron populations 1.22174 0.97275 1.00271 1.01565 1.20755 0.91565 0.94032 0.77517 0.93386 1.21019 1.32677 1.13637 0.88773 0.91176 1.24893 0.94841 0.95105 0.99114 1.69896 1.35953 1.22528 1.24300 0.86239 0.78576 0.79907 0.81234 1.20331 1.20901 1.19524 1.86513 1.75102 1.43593 1.21153 1.23610 0.76182 0.86406 0.86612 1.90625 1.47209 1.16565 1.84465 1.21127 0.78014 1.01982 0.91270 0.87073 1.92879 1.33209 1.94718 1.95855 1.21087 1.00725 1.01790 0.90129 1.19700 0.96859 0.95838 0.96089 1.21133 1.00008 0.94805 0.97113 1.21132 0.97656 0.99921 0.95212 1.21166 0.96565 0.96530 0.99817 1.21152 0.99931 0.95763 0.97050 1.21142 0.96269 1.00171 0.94525 0.88047 0.96461 0.94247 0.92311 0.88302 0.88402 0.85667 0.85996 0.86215 0.86032 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.33 37.16 0.35 -3.51 16 2 C 0.21 5.71 2.56 -27.88 -0.07 5.64 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.69 8.90 -34.44 -0.31 -14.99 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 O -0.35 -8.24 9.86 -39.24 -0.39 -8.62 16 13 C 0.43 8.98 7.27 36.01 0.26 9.24 16 14 O -0.50 -11.66 15.83 -18.75 -0.30 -11.95 16 15 C 0.11 1.77 3.82 -27.88 -0.11 1.67 16 16 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 17 F -0.19 -3.12 16.75 2.25 0.04 -3.08 16 18 C -0.10 -1.29 4.82 -27.88 -0.13 -1.42 16 19 C -0.08 -0.99 5.00 -104.62 -0.52 -1.51 16 20 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 21 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.10 -1.15 9.55 -39.58 -0.38 -1.53 16 25 H 0.10 2.70 6.07 -51.93 -0.32 2.39 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.10 1.32 7.99 -51.93 -0.42 0.90 16 30 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -30.89 311.15 -7.38 -38.27 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.45 Total: 0.18 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.58 Total: -10.97 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.63 Total: -24.50 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.68 Total: -20.58 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.89 -7.38 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778303611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.071 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds