Wall clock time and date at job start Mon Mar 30 2020 07:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47331 * 119.99847 * 2 1 3 5 5 H 1.08002 * 119.99517 * 119.99596 * 4 2 1 6 6 C 1.37873 * 120.00272 * 300.00611 * 4 2 1 7 7 N 1.31515 * 119.99610 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00099 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47227 * 89.99898 * 8 6 4 10 10 H 1.48502 * 109.46752 * 209.99454 * 8 6 4 11 11 H 1.48499 * 109.47215 * 329.99346 * 8 6 4 12 12 O 1.45203 * 109.47179 * 240.00489 * 2 1 3 13 13 C 1.34224 * 117.00308 * 89.99717 * 12 2 1 14 14 O 1.20820 * 120.00256 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99681 * 179.97438 * 13 12 2 16 16 H 1.08994 * 109.47120 * 15.00165 * 15 13 12 17 17 F 1.39894 * 109.46917 * 254.99738 * 15 13 12 18 18 C 1.53004 * 109.46503 * 135.00284 * 15 13 12 19 19 C 1.50706 * 109.46503 * 184.99692 * 18 15 13 20 20 C 1.38238 * 119.99727 * 90.00317 * 19 18 15 21 21 C 1.38234 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00207 * 270.01808 * 19 18 15 25 25 H 1.09002 * 109.46883 * 300.00059 * 1 2 3 26 26 H 1.09000 * 109.46767 * 59.99466 * 1 2 3 27 27 H 1.08994 * 109.47320 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99807 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47324 * 65.00281 * 18 15 13 30 30 H 1.08993 * 109.47443 * 304.99485 * 18 15 13 31 31 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 33 33 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 34 34 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 35 35 H 1.07999 * 120.00008 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3432 -0.9493 5.1119 11 1 2.4859 -2.5663 3.7119 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2519 -2.2504 15 6 2.7194 -0.5770 -3.5492 16 1 2.6072 -1.6588 -3.4785 17 9 4.0697 -0.2588 -3.7294 18 6 1.9097 -0.0569 -4.7387 19 6 2.3281 -0.7874 -5.9888 20 6 1.6834 -1.9537 -6.3562 21 6 2.0675 -2.6240 -7.5026 22 6 3.0958 -2.1278 -8.2817 23 6 3.7437 -0.9641 -7.9117 24 6 3.3566 -0.2913 -6.7678 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7094 1.1617 3.4844 29 1 2.0919 1.0104 -4.8635 30 1 0.8483 -0.2256 -4.5574 31 1 0.8802 -2.3416 -5.7473 32 1 1.5641 -3.5355 -7.7894 33 1 3.3961 -2.6518 -9.1771 34 1 4.5501 -0.5787 -8.5180 35 1 3.8607 0.6195 -6.4804 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778303611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:21 Heat of formation + Delta-G solvation = -138.828662 kcal Electronic energy + Delta-G solvation = -19525.051047 eV Core-core repulsion = 16208.459817 eV Total energy + Delta-G solvation = -3316.591231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.11337 -41.39761 -40.09404 -37.81965 -35.40968 -34.79340 -31.90440 -31.75242 -30.43700 -27.49648 -26.38312 -23.55789 -23.44709 -22.08464 -21.51299 -19.35652 -18.77656 -17.95384 -17.65668 -17.52482 -16.82228 -16.47456 -16.09522 -15.83796 -15.77693 -15.17444 -14.44446 -14.26176 -14.16657 -14.04460 -13.71944 -13.58942 -13.25078 -13.11454 -12.98162 -12.86254 -12.42965 -12.40988 -12.17096 -12.01143 -11.84061 -11.69311 -11.37443 -11.04999 -10.63540 -9.79430 -9.66583 -8.31950 -6.49400 0.37349 0.52903 0.95231 1.40985 1.43333 1.53899 1.67372 2.36658 2.84479 2.98996 3.31063 3.57398 3.59509 3.76224 3.92120 4.10150 4.19530 4.33861 4.47095 4.50063 4.63648 4.74431 4.76439 4.77700 4.82135 5.06341 5.11941 5.19840 5.43621 5.57262 5.58727 5.64898 5.69166 5.82352 5.98040 6.13291 6.50986 6.74137 7.21809 8.75758 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040489 B = 0.003720 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.383372 B = 7525.211253 C = 7575.266114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.214 3.786 3 H 0.008 0.992 4 C -0.552 4.552 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.984 3.016 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.261 1.261 12 O -0.354 6.354 13 C 0.427 3.573 14 O -0.530 6.530 15 C 0.125 3.875 16 H 0.139 0.861 17 F -0.192 7.192 18 C -0.091 4.091 19 C -0.101 4.101 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.121 4.121 25 H 0.082 0.918 26 H 0.028 0.972 27 H 0.050 0.950 28 H 0.272 0.728 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 -7.169 -19.298 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.026 0.974 4 C -0.590 4.590 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.807 3.193 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.185 1.185 12 O -0.270 6.270 13 C 0.269 3.731 14 O -0.419 6.419 15 C 0.087 3.913 16 H 0.157 0.843 17 F -0.172 7.172 18 C -0.128 4.128 19 C -0.101 4.101 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.139 4.139 25 H 0.100 0.900 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.127 0.873 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.740 -6.691 -19.105 20.318 hybrid contribution 0.290 0.398 1.074 1.181 sum 2.030 -6.293 -18.032 19.206 Atomic orbital electron populations 1.21991 0.96069 1.00813 1.01153 1.20490 0.92519 0.92094 0.78795 0.97380 1.21303 1.33680 1.14101 0.89902 0.91347 1.25837 0.94611 0.95672 1.02152 1.70010 1.36409 1.23576 1.25366 0.85160 0.78109 0.78979 0.77047 1.19859 1.19872 1.18545 1.86502 1.75471 1.43679 1.21299 1.24730 0.75062 0.86189 0.87120 1.90606 1.48337 1.18050 1.84940 1.21332 0.77744 1.03027 0.89157 0.84344 1.92869 1.33826 1.94877 1.95650 1.21024 1.00838 1.01328 0.89659 1.19617 0.97944 0.96739 0.95809 1.21361 1.00246 0.94383 0.97831 1.21480 0.97619 1.00561 0.94619 1.21546 0.95929 0.96114 1.00448 1.21431 1.00462 0.95987 0.96678 1.21277 0.96607 1.00556 0.95464 0.89956 0.95298 0.93075 0.91869 0.89344 0.87287 0.84374 0.83612 0.83639 0.84189 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.19 9.33 71.98 0.67 -6.52 16 2 C 0.21 11.75 2.56 29.85 0.08 11.82 16 3 H 0.01 0.52 7.16 -2.38 -0.02 0.50 16 4 C -0.55 -31.40 8.90 25.60 0.23 -31.17 16 5 H 0.07 3.81 7.81 -2.91 -0.02 3.78 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -52.34 11.32 21.45 0.24 -52.10 16 8 Si 0.98 42.68 29.54 68.60 2.03 44.70 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 12 O -0.35 -16.95 9.86 -51.36 -0.51 -17.46 16 13 C 0.43 17.97 7.27 71.24 0.52 18.49 16 14 O -0.53 -25.43 15.83 21.98 0.35 -25.09 16 15 C 0.12 3.81 3.82 29.85 0.11 3.92 16 16 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 17 F -0.19 -6.36 16.75 44.97 0.75 -5.61 16 18 C -0.09 -2.29 4.82 29.85 0.14 -2.15 16 19 C -0.10 -2.24 5.00 -19.86 -0.10 -2.33 16 20 C -0.12 -2.25 9.70 22.27 0.22 -2.03 16 21 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 22 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 24 C -0.12 -2.60 9.55 22.27 0.21 -2.38 16 25 H 0.08 4.48 6.07 -2.39 -0.01 4.46 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.09 2.39 7.99 -2.39 -0.02 2.37 16 30 H 0.11 2.45 8.08 -2.39 -0.02 2.43 16 31 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.12 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -67.00 311.15 7.15 -59.86 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.08 Total: 12.04 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 3.20 Total: -16.35 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.24 Total: -52.10 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.16 Total: -42.55 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.75 Total: -5.61 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -67.00 7.15 -59.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778303611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.973 kcal (2) G-P(sol) polarization free energy of solvation -67.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds