Wall clock time and date at job start Mon Mar 30 2020 07:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47492 * 2 1 4 4 C 1.50706 * 109.46665 * 119.99696 * 2 1 3 5 5 H 1.07998 * 119.99731 * 120.00174 * 4 2 1 6 6 C 1.37873 * 119.99892 * 299.99804 * 4 2 1 7 7 N 1.31506 * 120.00560 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99726 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46845 * 60.00042 * 8 6 4 10 10 H 1.48495 * 109.47017 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47253 * 300.00293 * 8 6 4 12 12 O 1.45196 * 109.46952 * 239.99557 * 2 1 3 13 13 C 1.34226 * 116.99887 * 90.00848 * 12 2 1 14 14 O 1.20830 * 120.00075 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00081 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47060 * 344.99620 * 15 13 12 17 17 F 1.39904 * 109.47245 * 104.99804 * 15 13 12 18 18 C 1.52997 * 109.47212 * 224.99565 * 15 13 12 19 19 C 1.50698 * 109.47721 * 174.99887 * 18 15 13 20 20 C 1.38239 * 120.00185 * 269.73486 * 19 18 15 21 21 C 1.38230 * 120.00287 * 179.76220 * 20 19 18 22 22 C 1.38237 * 119.99484 * 0.50042 * 21 20 19 23 23 C 1.38238 * 120.00439 * 359.74708 * 22 21 20 24 24 C 1.38232 * 120.00028 * 89.99519 * 19 18 15 25 25 H 1.08997 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47441 * 300.00620 * 1 2 3 27 27 H 1.09007 * 109.46787 * 60.00196 * 1 2 3 28 28 H 0.97005 * 120.00593 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47325 * 294.99852 * 18 15 13 30 30 H 1.09008 * 109.47017 * 54.99761 * 18 15 13 31 31 H 1.08004 * 119.99638 * 359.97438 * 20 19 18 32 32 H 1.08001 * 120.00056 * 180.22520 * 21 20 19 33 33 H 1.08004 * 119.99559 * 179.72333 * 22 21 20 34 34 H 1.07997 * 120.00044 * 179.97438 * 23 22 21 35 35 H 1.08005 * 119.99909 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1203 4.0081 9 1 3.8061 -1.1209 4.0083 10 1 1.8258 -0.4204 5.2205 11 1 1.8256 -2.5201 4.0079 12 8 2.0140 -0.6846 -1.1855 13 6 2.2173 0.0639 -2.2810 14 8 1.9976 1.2517 -2.2505 15 6 2.7194 -0.5772 -3.5491 16 1 3.1087 -1.5703 -3.3246 17 9 1.6678 -0.6847 -4.4655 18 6 3.8330 0.2834 -4.1493 19 6 4.4188 -0.4174 -5.3480 20 6 5.4908 -1.2760 -5.1911 21 6 6.0250 -1.9226 -6.2899 22 6 5.4938 -1.7025 -7.5470 23 6 4.4251 -0.8400 -7.7047 24 6 3.8876 -0.1974 -6.6051 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7081 1.1610 3.4844 29 1 3.4232 1.2459 -4.4555 30 1 4.6124 0.4409 -3.4037 31 1 5.9087 -1.4443 -4.2095 32 1 6.8602 -2.5962 -6.1668 33 1 5.9141 -2.2043 -8.4062 34 1 4.0105 -0.6678 -8.6869 35 1 3.0531 0.4770 -6.7283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778303612.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:25 Heat of formation + Delta-G solvation = -123.470640 kcal Electronic energy + Delta-G solvation = -19526.340934 eV Core-core repulsion = 16210.415677 eV Total energy + Delta-G solvation = -3315.925257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.78091 -39.65947 -39.24953 -35.95219 -33.79636 -33.32121 -31.01573 -30.06748 -29.14038 -25.43868 -25.09541 -22.69725 -21.91817 -20.96074 -19.83495 -17.72715 -16.99224 -16.84444 -16.16182 -15.82647 -15.58671 -15.04906 -14.91484 -14.57588 -14.41235 -13.54976 -13.43627 -13.18462 -12.81764 -12.60070 -12.26045 -12.05797 -11.86359 -11.34637 -11.25685 -11.15061 -11.08909 -11.06806 -10.89663 -10.45686 -10.32541 -9.73278 -9.63009 -9.04271 -8.99889 -8.84859 -8.54417 -6.23142 -4.31050 1.17256 1.28143 2.64575 3.17698 3.23843 3.27864 3.33479 3.66905 4.27171 4.48373 4.63663 4.71121 4.86120 4.90081 5.01115 5.02205 5.09818 5.37066 5.42825 5.47004 5.71463 5.74032 5.92587 5.95397 6.32251 6.37625 6.50184 6.55603 6.82996 6.84438 6.86668 7.03734 7.51182 7.65038 7.82764 8.05958 8.44445 8.77929 9.34503 10.84209 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033950 B = 0.003939 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.544185 B = 7106.096282 C = 7629.323666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H 0.049 0.951 4 C -0.524 4.524 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.273 1.273 12 O -0.348 6.348 13 C 0.432 3.568 14 O -0.500 6.500 15 C 0.113 3.887 16 H 0.112 0.888 17 F -0.187 7.187 18 C -0.100 4.100 19 C -0.085 4.085 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.103 4.103 25 H 0.038 0.962 26 H 0.101 0.899 27 H 0.017 0.983 28 H 0.268 0.732 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.910 -4.128 -16.406 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.264 6.264 13 C 0.272 3.728 14 O -0.389 6.389 15 C 0.076 3.924 16 H 0.130 0.870 17 F -0.168 7.168 18 C -0.138 4.138 19 C -0.085 4.085 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.121 4.121 25 H 0.057 0.943 26 H 0.119 0.881 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.704 -3.653 -16.202 18.309 hybrid contribution 0.068 -0.300 0.799 0.856 sum 7.772 -3.954 -15.403 17.700 Atomic orbital electron populations 1.22177 0.97316 1.00332 1.01555 1.20748 0.91618 0.93967 0.77461 0.93358 1.20976 1.32843 1.13634 0.88779 0.91227 1.24892 0.94844 0.95071 0.99095 1.69883 1.35812 1.22499 1.24424 0.86301 0.79211 0.79557 0.80885 1.19927 1.20986 1.19873 1.86513 1.75037 1.43543 1.21274 1.23608 0.76055 0.86402 0.86735 1.90628 1.47093 1.16686 1.84466 1.21127 0.85311 1.02284 0.83693 0.87024 1.92877 1.59475 1.97426 1.66983 1.21087 0.97207 0.99127 0.96334 1.19700 0.96412 0.97976 0.94373 1.21147 0.96138 0.96478 0.99264 1.21136 1.00186 0.99863 0.92730 1.21167 0.96909 0.98664 0.97353 1.21147 0.96778 0.97311 0.98695 1.21136 0.99374 0.99608 0.92017 0.94253 0.88052 0.96428 0.92233 0.88320 0.88290 0.85612 0.85988 0.86227 0.86052 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.33 37.16 0.35 -3.65 16 2 C 0.21 5.73 2.56 -27.88 -0.07 5.66 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.57 8.90 -34.44 -0.31 -14.88 16 5 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 O -0.35 -8.24 9.86 -39.25 -0.39 -8.62 16 13 C 0.43 8.98 7.27 36.01 0.26 9.24 16 14 O -0.50 -11.66 15.82 -18.75 -0.30 -11.95 16 15 C 0.11 1.77 3.82 -27.88 -0.11 1.66 16 16 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 17 F -0.19 -3.08 16.75 2.25 0.04 -3.04 16 18 C -0.10 -1.31 4.82 -27.89 -0.13 -1.44 16 19 C -0.08 -1.00 5.00 -104.62 -0.52 -1.52 16 20 C -0.11 -1.19 9.70 -39.58 -0.38 -1.58 16 21 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.10 -1.16 9.55 -39.59 -0.38 -1.54 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.10 1.33 7.99 -51.93 -0.42 0.91 16 30 H 0.10 1.20 8.08 -51.92 -0.42 0.78 16 31 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -30.66 311.15 -7.38 -38.05 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.45 Total: 0.59 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.58 Total: -11.06 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.63 Total: -24.43 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.68 Total: -20.58 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.66 -7.38 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778303612.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.423 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds