Wall clock time and date at job start Mon Mar 30 2020 07:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47492 * 2 1 4 4 C 1.50706 * 109.46665 * 119.99696 * 2 1 3 5 5 H 1.07998 * 119.99731 * 120.00174 * 4 2 1 6 6 C 1.37873 * 119.99892 * 299.99804 * 4 2 1 7 7 N 1.31506 * 120.00560 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99726 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46845 * 60.00042 * 8 6 4 10 10 H 1.48495 * 109.47017 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47253 * 300.00293 * 8 6 4 12 12 O 1.45196 * 109.46952 * 239.99557 * 2 1 3 13 13 C 1.34226 * 116.99887 * 90.00848 * 12 2 1 14 14 O 1.20830 * 120.00075 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00081 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.47060 * 344.99620 * 15 13 12 17 17 F 1.39904 * 109.47245 * 104.99804 * 15 13 12 18 18 C 1.52997 * 109.47212 * 224.99565 * 15 13 12 19 19 C 1.50698 * 109.47721 * 174.99887 * 18 15 13 20 20 C 1.38239 * 120.00185 * 269.73486 * 19 18 15 21 21 C 1.38230 * 120.00287 * 179.76220 * 20 19 18 22 22 C 1.38237 * 119.99484 * 0.50042 * 21 20 19 23 23 C 1.38238 * 120.00439 * 359.74708 * 22 21 20 24 24 C 1.38232 * 120.00028 * 89.99519 * 19 18 15 25 25 H 1.08997 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47441 * 300.00620 * 1 2 3 27 27 H 1.09007 * 109.46787 * 60.00196 * 1 2 3 28 28 H 0.97005 * 120.00593 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47325 * 294.99852 * 18 15 13 30 30 H 1.09008 * 109.47017 * 54.99761 * 18 15 13 31 31 H 1.08004 * 119.99638 * 359.97438 * 20 19 18 32 32 H 1.08001 * 120.00056 * 180.22520 * 21 20 19 33 33 H 1.08004 * 119.99559 * 179.72333 * 22 21 20 34 34 H 1.07997 * 120.00044 * 179.97438 * 23 22 21 35 35 H 1.08005 * 119.99909 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3212 -1.1203 4.0081 9 1 3.8061 -1.1209 4.0083 10 1 1.8258 -0.4204 5.2205 11 1 1.8256 -2.5201 4.0079 12 8 2.0140 -0.6846 -1.1855 13 6 2.2173 0.0639 -2.2810 14 8 1.9976 1.2517 -2.2505 15 6 2.7194 -0.5772 -3.5491 16 1 3.1087 -1.5703 -3.3246 17 9 1.6678 -0.6847 -4.4655 18 6 3.8330 0.2834 -4.1493 19 6 4.4188 -0.4174 -5.3480 20 6 5.4908 -1.2760 -5.1911 21 6 6.0250 -1.9226 -6.2899 22 6 5.4938 -1.7025 -7.5470 23 6 4.4251 -0.8400 -7.7047 24 6 3.8876 -0.1974 -6.6051 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7081 1.1610 3.4844 29 1 3.4232 1.2459 -4.4555 30 1 4.6124 0.4409 -3.4037 31 1 5.9087 -1.4443 -4.2095 32 1 6.8602 -2.5962 -6.1668 33 1 5.9141 -2.2043 -8.4062 34 1 4.0105 -0.6678 -8.6869 35 1 3.0531 0.4770 -6.7283 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778303612.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:24 Heat of formation + Delta-G solvation = -138.673603 kcal Electronic energy + Delta-G solvation = -19527.000184 eV Core-core repulsion = 16210.415677 eV Total energy + Delta-G solvation = -3316.584507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.11345 -41.39753 -40.09626 -37.82261 -35.40656 -34.79361 -31.91135 -31.75400 -30.43157 -27.50749 -26.39285 -23.56008 -23.44692 -22.05492 -21.54269 -19.36108 -18.83381 -17.90447 -17.59315 -17.46940 -16.93374 -16.49223 -16.04783 -15.85103 -15.78888 -15.18281 -14.42886 -14.28694 -14.21141 -13.92254 -13.78665 -13.59709 -13.25179 -13.10824 -12.99567 -12.83832 -12.43590 -12.42465 -12.18346 -12.01999 -11.84206 -11.68411 -11.37398 -11.06738 -10.62428 -9.79610 -9.66669 -8.30759 -6.48629 0.37179 0.52787 0.95427 1.41803 1.46618 1.53396 1.66774 2.37569 2.84369 3.00146 3.30885 3.56282 3.58701 3.76205 3.92083 4.10228 4.19471 4.33786 4.45482 4.49889 4.63564 4.72573 4.75801 4.76338 4.81967 5.04152 5.11658 5.19742 5.43566 5.54947 5.58683 5.64742 5.69121 5.81372 5.97704 6.13147 6.51499 6.74115 7.22623 8.76874 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033950 B = 0.003939 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.544185 B = 7106.096282 C = 7629.323666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.215 3.785 3 H 0.013 0.987 4 C -0.551 4.551 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.264 1.264 12 O -0.353 6.353 13 C 0.427 3.573 14 O -0.530 6.530 15 C 0.125 3.875 16 H 0.138 0.862 17 F -0.190 7.190 18 C -0.092 4.092 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.120 4.120 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.021 0.979 28 H 0.272 0.728 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.297 -5.872 -17.068 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.162 3.838 3 H 0.031 0.969 4 C -0.589 4.589 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.808 3.192 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.188 1.188 12 O -0.269 6.269 13 C 0.269 3.731 14 O -0.419 6.419 15 C 0.088 3.912 16 H 0.156 0.844 17 F -0.171 7.171 18 C -0.130 4.130 19 C -0.101 4.101 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.138 4.138 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.092 -5.399 -16.895 19.932 hybrid contribution -0.354 0.279 0.896 1.003 sum 8.738 -5.121 -16.000 18.936 Atomic orbital electron populations 1.22024 0.96778 1.00574 1.00921 1.20480 0.92076 0.92376 0.78866 0.96893 1.21270 1.33755 1.14145 0.89685 0.90998 1.25855 0.94605 0.95620 1.02214 1.70004 1.36407 1.23668 1.25435 0.85197 0.78910 0.78563 0.76543 1.19043 1.20333 1.18834 1.86502 1.75372 1.43612 1.21447 1.24730 0.74848 0.86207 0.87309 1.90610 1.48227 1.18177 1.84920 1.21296 0.85298 1.03634 0.80941 0.84390 1.92872 1.59989 1.97467 1.66726 1.21023 0.96360 0.98386 0.97190 1.19607 0.97523 0.99147 0.93796 1.21358 0.95848 0.96297 1.00413 1.21475 1.00602 0.99739 0.92465 1.21549 0.96253 0.97969 0.98243 1.21434 0.96931 0.97014 0.99118 1.21274 0.99783 1.00237 0.92531 0.93419 0.89727 0.95954 0.91883 0.89271 0.87579 0.84556 0.83662 0.83605 0.84097 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.58 9.33 71.98 0.67 -6.91 16 2 C 0.21 11.80 2.56 29.85 0.08 11.88 16 3 H 0.01 0.81 7.16 -2.39 -0.02 0.79 16 4 C -0.55 -30.89 8.90 25.60 0.23 -30.67 16 5 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -52.32 11.32 21.44 0.24 -52.07 16 8 Si 0.99 42.09 29.54 68.60 2.03 44.12 16 9 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 10 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 12 O -0.35 -16.94 9.86 -51.38 -0.51 -17.45 16 13 C 0.43 17.99 7.27 71.24 0.52 18.51 16 14 O -0.53 -25.45 15.82 21.95 0.35 -25.10 16 15 C 0.13 3.84 3.82 29.85 0.11 3.95 16 16 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 17 F -0.19 -6.15 16.75 44.97 0.75 -5.40 16 18 C -0.09 -2.37 4.82 29.85 0.14 -2.23 16 19 C -0.10 -2.26 5.00 -19.87 -0.10 -2.36 16 20 C -0.12 -2.34 9.70 22.27 0.22 -2.12 16 21 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 22 C -0.12 -1.88 10.05 22.27 0.22 -1.65 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.12 -2.58 9.55 22.27 0.21 -2.37 16 25 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.08 4.70 6.07 -2.39 -0.01 4.69 16 27 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 29 H 0.09 2.44 7.99 -2.39 -0.02 2.42 16 30 H 0.11 2.53 8.08 -2.38 -0.02 2.51 16 31 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -66.19 311.15 7.15 -59.04 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.08 Total: 13.25 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 3.20 Total: -16.39 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.24 Total: -52.07 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.16 Total: -42.55 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.75 Total: -5.40 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -66.19 7.15 -59.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778303612.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.634 kcal (2) G-P(sol) polarization free energy of solvation -66.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds