Wall clock time and date at job start Mon Mar 30 2020 07:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47395 * 2 1 4 4 C 1.50707 * 109.47200 * 240.00202 * 2 1 3 5 5 H 1.08000 * 119.99469 * 239.99777 * 4 2 1 6 6 C 1.37877 * 120.00107 * 60.00379 * 4 2 1 7 7 N 1.31515 * 119.99712 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47122 * 89.99647 * 8 6 4 10 10 H 1.48502 * 109.47083 * 209.99449 * 8 6 4 11 11 H 1.48498 * 109.47144 * 329.99573 * 8 6 4 12 12 O 1.45205 * 109.47449 * 120.00279 * 2 1 3 13 13 C 1.34231 * 116.99690 * 270.00601 * 12 2 1 14 14 O 1.20827 * 120.00054 * 359.97438 * 13 12 2 15 15 C 1.50694 * 119.99822 * 179.97438 * 13 12 2 16 16 H 1.09007 * 109.47204 * 344.99639 * 15 13 12 17 17 F 1.39897 * 109.47251 * 104.99302 * 15 13 12 18 18 C 1.52995 * 109.47090 * 224.99672 * 15 13 12 19 19 C 1.50707 * 109.47301 * 174.99821 * 18 15 13 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 15 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 15 25 25 H 1.08993 * 109.47550 * 300.00072 * 1 2 3 26 26 H 1.09007 * 109.47433 * 60.00051 * 1 2 3 27 27 H 1.09008 * 109.47195 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99687 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47610 * 55.00124 * 18 15 13 30 30 H 1.09000 * 109.47256 * 294.99466 * 18 15 13 31 31 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 33 33 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 34 34 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 35 35 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 8 2.0140 -0.6845 1.1855 13 6 2.2170 0.0639 2.2811 14 8 1.9980 1.2518 2.2504 15 6 2.7182 -0.5773 3.5494 16 1 2.6054 -1.6592 3.4788 17 9 4.0687 -0.2602 3.7302 18 6 1.9084 -0.0567 4.7385 19 6 2.3255 -0.7873 5.9889 20 6 3.3538 -0.2916 6.7686 21 6 3.7361 -0.9615 7.9157 22 6 3.0897 -2.1268 8.2836 23 6 2.0651 -2.6254 7.5010 24 6 1.6797 -1.9530 6.3563 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7083 1.1610 -3.4844 29 1 0.8468 -0.2246 4.5567 30 1 2.0913 1.0106 4.8633 31 1 3.8585 0.6191 6.4814 32 1 4.5397 -0.5744 8.5246 33 1 3.3882 -2.6499 9.1801 34 1 1.5630 -3.5381 7.7860 35 1 0.8758 -2.3399 5.7476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778303613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:28 Heat of formation + Delta-G solvation = -123.348790 kcal Electronic energy + Delta-G solvation = -19524.230615 eV Core-core repulsion = 16208.310641 eV Total energy + Delta-G solvation = -3315.919973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.76791 -39.66399 -39.25668 -35.95269 -33.80612 -33.31903 -31.02512 -30.06745 -29.16292 -25.42833 -25.10845 -22.70784 -21.91256 -21.00018 -19.82169 -17.72474 -16.92914 -16.80739 -16.35412 -15.82514 -15.50573 -15.07884 -14.91435 -14.54714 -14.40657 -13.55698 -13.42711 -13.19969 -12.82088 -12.60932 -12.27373 -12.09910 -11.86347 -11.28962 -11.26132 -11.23223 -11.08473 -11.07048 -10.87834 -10.45710 -10.31798 -9.74196 -9.63031 -9.05181 -8.98982 -8.85932 -8.54255 -6.22907 -4.30281 1.16299 1.27182 2.64334 3.18325 3.22917 3.29251 3.35898 3.66185 4.28180 4.47266 4.62673 4.70157 4.85476 4.89441 4.99981 5.01378 5.10276 5.36040 5.42169 5.46270 5.70206 5.72824 5.91106 5.94376 6.31189 6.36790 6.49006 6.53726 6.79992 6.81098 6.85667 7.02376 7.51578 7.64216 7.82809 8.05958 8.44499 8.79068 9.35264 10.84585 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040505 B = 0.003720 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.105641 B = 7526.034873 C = 7575.878860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.048 0.952 4 C -0.523 4.523 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.348 6.348 13 C 0.432 3.568 14 O -0.500 6.500 15 C 0.114 3.886 16 H 0.111 0.889 17 F -0.186 7.186 18 C -0.100 4.100 19 C -0.085 4.085 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.113 4.113 25 H 0.016 0.984 26 H 0.101 0.899 27 H 0.038 0.962 28 H 0.267 0.733 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -5.244 18.342 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.741 3.259 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.264 6.264 13 C 0.272 3.728 14 O -0.389 6.389 15 C 0.076 3.924 16 H 0.129 0.871 17 F -0.167 7.167 18 C -0.137 4.137 19 C -0.085 4.085 20 C -0.121 4.121 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.131 4.131 25 H 0.035 0.965 26 H 0.120 0.880 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.554 -4.760 18.120 18.799 hybrid contribution 0.307 -0.249 -0.879 0.964 sum 1.861 -5.009 17.241 18.051 Atomic orbital electron populations 1.22176 0.97279 1.00274 1.01569 1.20754 0.91557 0.94038 0.77520 0.93375 1.21022 1.32701 1.13609 0.88772 0.91174 1.24895 0.94876 0.95072 0.99114 1.69894 1.35977 1.22502 1.24302 0.86237 0.79347 0.79118 0.81246 1.20294 1.20920 1.19551 1.86515 1.75102 1.43588 1.21154 1.23611 0.76176 0.86408 0.86614 1.90627 1.47198 1.16564 1.84477 1.21125 0.78014 1.01989 0.91264 0.87073 1.92880 1.33194 1.94741 1.95848 1.21088 1.00730 1.01785 0.90131 1.19700 0.96836 0.95855 0.96093 1.21143 0.96288 1.00184 0.94489 1.21152 0.99949 0.95776 0.97023 1.21166 0.96614 0.96496 0.99802 1.21133 0.97668 0.99904 0.95215 1.21133 0.99989 0.94797 0.97141 0.96456 0.88048 0.94253 0.92310 0.88400 0.88303 0.85712 0.86033 0.86215 0.85995 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.33 37.15 0.35 -3.52 16 2 C 0.21 5.71 2.56 -27.88 -0.07 5.64 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.69 8.90 -34.44 -0.31 -14.99 16 5 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 8 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 O -0.35 -8.23 9.86 -39.26 -0.39 -8.62 16 13 C 0.43 8.98 7.27 36.00 0.26 9.24 16 14 O -0.50 -11.66 15.82 -18.75 -0.30 -11.96 16 15 C 0.11 1.77 3.82 -27.89 -0.11 1.67 16 16 H 0.11 1.50 8.14 -51.92 -0.42 1.08 16 17 F -0.19 -3.12 16.75 2.25 0.04 -3.08 16 18 C -0.10 -1.29 4.82 -27.88 -0.13 -1.42 16 19 C -0.08 -0.99 5.00 -104.62 -0.52 -1.51 16 20 C -0.10 -1.15 9.55 -39.58 -0.38 -1.53 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.10 2.70 6.07 -51.93 -0.32 2.39 16 27 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 30 H 0.10 1.32 7.99 -51.93 -0.42 0.90 16 31 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -30.89 311.15 -7.38 -38.27 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.45 Total: 0.18 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.58 Total: -10.97 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.63 Total: -24.50 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.68 Total: -20.58 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.89 -7.38 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778303613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.080 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds