Wall clock time and date at job start Mon Mar 30 2020 07:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47395 * 2 1 4 4 C 1.50707 * 109.47200 * 240.00202 * 2 1 3 5 5 H 1.08000 * 119.99469 * 239.99777 * 4 2 1 6 6 C 1.37877 * 120.00107 * 60.00379 * 4 2 1 7 7 N 1.31515 * 119.99712 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47122 * 89.99647 * 8 6 4 10 10 H 1.48502 * 109.47083 * 209.99449 * 8 6 4 11 11 H 1.48498 * 109.47144 * 329.99573 * 8 6 4 12 12 O 1.45205 * 109.47449 * 120.00279 * 2 1 3 13 13 C 1.34231 * 116.99690 * 270.00601 * 12 2 1 14 14 O 1.20827 * 120.00054 * 359.97438 * 13 12 2 15 15 C 1.50694 * 119.99822 * 179.97438 * 13 12 2 16 16 H 1.09007 * 109.47204 * 344.99639 * 15 13 12 17 17 F 1.39897 * 109.47251 * 104.99302 * 15 13 12 18 18 C 1.52995 * 109.47090 * 224.99672 * 15 13 12 19 19 C 1.50707 * 109.47301 * 174.99821 * 18 15 13 20 20 C 1.38238 * 119.99792 * 90.00016 * 19 18 15 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97953 * 19 18 15 25 25 H 1.08993 * 109.47550 * 300.00072 * 1 2 3 26 26 H 1.09007 * 109.47433 * 60.00051 * 1 2 3 27 27 H 1.09008 * 109.47195 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99687 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.47610 * 55.00124 * 18 15 13 30 30 H 1.09000 * 109.47256 * 294.99466 * 18 15 13 31 31 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 33 33 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 34 34 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 35 35 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.3428 -2.1615 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 8 2.0140 -0.6845 1.1855 13 6 2.2170 0.0639 2.2811 14 8 1.9980 1.2518 2.2504 15 6 2.7182 -0.5773 3.5494 16 1 2.6054 -1.6592 3.4788 17 9 4.0687 -0.2602 3.7302 18 6 1.9084 -0.0567 4.7385 19 6 2.3255 -0.7873 5.9889 20 6 3.3538 -0.2916 6.7686 21 6 3.7361 -0.9615 7.9157 22 6 3.0897 -2.1268 8.2836 23 6 2.0651 -2.6254 7.5010 24 6 1.6797 -1.9530 6.3563 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7083 1.1610 -3.4844 29 1 0.8468 -0.2246 4.5567 30 1 2.0913 1.0106 4.8633 31 1 3.8585 0.6191 6.4814 32 1 4.5397 -0.5744 8.5246 33 1 3.3882 -2.6499 9.1801 34 1 1.5630 -3.5381 7.7860 35 1 0.8758 -2.3399 5.7476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778303613.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:27 Heat of formation + Delta-G solvation = -138.839655 kcal Electronic energy + Delta-G solvation = -19524.902349 eV Core-core repulsion = 16208.310641 eV Total energy + Delta-G solvation = -3316.591708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.11279 -41.39643 -40.09391 -37.81892 -35.40962 -34.79334 -31.90478 -31.75234 -30.43750 -27.49625 -26.38319 -23.55729 -23.44700 -22.08463 -21.51274 -19.35646 -18.77650 -17.95399 -17.65629 -17.52483 -16.82220 -16.47543 -16.09462 -15.83835 -15.77665 -15.17431 -14.44544 -14.26176 -14.16646 -14.04463 -13.72016 -13.58837 -13.25177 -13.11901 -12.98746 -12.82789 -12.43692 -12.41975 -12.18480 -12.01155 -11.84077 -11.68490 -11.37269 -11.05805 -10.62985 -9.79431 -9.66589 -8.31952 -6.49417 0.37348 0.52903 0.95187 1.41001 1.43555 1.53460 1.67502 2.36638 2.84489 2.98921 3.31067 3.57343 3.59473 3.76238 3.92133 4.10116 4.19525 4.33848 4.47120 4.50039 4.63642 4.74407 4.76394 4.77674 4.82133 5.06285 5.11930 5.19832 5.43602 5.57268 5.58721 5.64891 5.69163 5.82337 5.98015 6.13288 6.50961 6.74092 7.21797 8.75732 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040505 B = 0.003720 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.105641 B = 7526.034873 C = 7575.878860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.214 3.786 3 H 0.009 0.991 4 C -0.553 4.553 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.984 3.016 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.266 1.266 12 O -0.354 6.354 13 C 0.427 3.573 14 O -0.529 6.529 15 C 0.124 3.876 16 H 0.139 0.861 17 F -0.192 7.192 18 C -0.091 4.091 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.120 4.120 25 H 0.028 0.972 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.272 0.728 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 -7.166 19.296 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.026 0.974 4 C -0.590 4.590 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.807 3.193 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.191 1.191 12 O -0.270 6.270 13 C 0.269 3.731 14 O -0.419 6.419 15 C 0.087 3.913 16 H 0.157 0.843 17 F -0.172 7.172 18 C -0.128 4.128 19 C -0.101 4.101 20 C -0.139 4.139 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.138 4.138 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.722 -6.683 19.103 20.312 hybrid contribution 0.278 0.385 -1.073 1.173 sum 2.000 -6.298 18.031 19.203 Atomic orbital electron populations 1.21992 0.96073 1.00810 1.01160 1.20488 0.92510 0.92102 0.78796 0.97365 1.21304 1.33707 1.14078 0.89905 0.91361 1.25837 0.94643 0.95636 1.02152 1.70009 1.36431 1.23552 1.25365 0.85157 0.79031 0.78136 0.76955 1.18946 1.20276 1.19061 1.86504 1.75470 1.43674 1.21302 1.24731 0.75056 0.86192 0.87122 1.90608 1.48326 1.18047 1.84951 1.21331 0.77744 1.03037 0.89150 0.84342 1.92870 1.33815 1.94899 1.95643 1.21024 1.00841 1.01321 0.89661 1.19617 0.97922 0.96759 0.95811 1.21278 0.96628 1.00569 0.95430 1.21430 1.00475 0.96005 0.96650 1.21546 0.95969 0.96082 1.00442 1.21481 0.97626 1.00548 0.94623 1.21361 1.00228 0.94375 0.97855 0.95290 0.89954 0.93089 0.91870 0.87283 0.89345 0.86148 0.84189 0.83639 0.83610 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.19 9.33 71.98 0.67 -6.52 16 2 C 0.21 11.75 2.56 29.85 0.08 11.82 16 3 H 0.01 0.53 7.16 -2.39 -0.02 0.51 16 4 C -0.55 -31.41 8.90 25.60 0.23 -31.18 16 5 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -52.34 11.32 21.45 0.24 -52.10 16 8 Si 0.98 42.68 29.54 68.60 2.03 44.71 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 O -0.35 -16.96 9.86 -51.43 -0.51 -17.46 16 13 C 0.43 17.97 7.27 71.23 0.52 18.49 16 14 O -0.53 -25.43 15.82 21.96 0.35 -25.09 16 15 C 0.12 3.81 3.82 29.84 0.11 3.92 16 16 H 0.14 3.50 8.14 -2.38 -0.02 3.48 16 17 F -0.19 -6.37 16.75 44.97 0.75 -5.61 16 18 C -0.09 -2.29 4.82 29.85 0.14 -2.15 16 19 C -0.10 -2.24 5.00 -19.86 -0.10 -2.33 16 20 C -0.12 -2.60 9.55 22.27 0.21 -2.39 16 21 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 22 C -0.12 -1.87 10.05 22.27 0.22 -1.64 16 23 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 24 C -0.12 -2.24 9.70 22.27 0.22 -2.03 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 4.48 6.07 -2.38 -0.01 4.46 16 27 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.11 2.45 8.09 -2.38 -0.02 2.44 16 30 H 0.09 2.39 7.99 -2.39 -0.02 2.37 16 31 H 0.12 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -67.01 311.15 7.15 -59.86 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.08 Total: 12.04 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 3.20 Total: -16.36 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.24 Total: -52.10 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.16 Total: -42.55 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.75 Total: -5.61 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -67.01 7.15 -59.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778303613.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.979 kcal (2) G-P(sol) polarization free energy of solvation -67.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds