Wall clock time and date at job start Mon Mar 30 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00256 * 2 1 4 4 H 1.48493 * 109.47217 * 270.00672 * 3 2 1 5 5 H 1.48503 * 109.46842 * 30.00664 * 3 2 1 6 6 H 1.48497 * 109.46819 * 150.00395 * 3 2 1 7 7 C 1.37881 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99791 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47174 * 180.02562 * 10 9 7 12 12 O 1.20828 * 119.99770 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00217 * 180.02562 * 11 10 9 14 14 C 1.45200 * 117.00240 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47170 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47106 * 179.97438 * 15 14 13 17 17 C 1.38271 * 119.98983 * 270.25730 * 16 15 14 18 18 C 1.38219 * 120.05279 * 180.25774 * 17 16 15 19 19 C 1.38227 * 120.02402 * 359.48356 * 18 17 16 20 20 C 1.38435 * 119.97416 * 0.26250 * 19 18 17 21 21 F 1.35097 * 120.02437 * 179.97438 * 20 19 18 22 22 C 1.38179 * 119.98470 * 90.00228 * 16 15 14 23 23 H 0.96996 * 119.99671 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46969 * 60.00117 * 9 7 2 25 25 H 1.08999 * 109.47655 * 300.00557 * 9 7 2 26 26 H 1.08996 * 109.47353 * 60.00441 * 10 9 7 27 27 H 1.09000 * 109.47395 * 300.00244 * 10 9 7 28 28 H 1.09000 * 109.46777 * 59.99975 * 14 13 11 29 29 H 1.08994 * 109.47131 * 300.00038 * 14 13 11 30 30 H 1.09007 * 109.46882 * 60.00100 * 15 14 13 31 31 H 1.08994 * 109.47239 * 300.00112 * 15 14 13 32 32 H 1.08000 * 119.97479 * 0.02562 * 17 16 15 33 33 H 1.08002 * 119.99072 * 179.76964 * 18 17 16 34 34 H 1.07999 * 120.01289 * 180.23490 * 19 18 17 35 35 H 1.07994 * 120.01414 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2834 -4.9671 -0.0011 13 8 2.1628 -6.1297 -0.0008 14 6 1.3719 -7.3474 -0.0020 15 6 2.3039 -8.5608 -0.0020 16 6 1.4832 -9.8246 -0.0026 17 6 1.1018 -10.4016 1.1947 18 6 0.3535 -11.5638 1.1956 19 6 -0.0235 -12.1446 -0.0007 20 6 0.3533 -11.5649 -1.2000 21 9 -0.0142 -12.1321 -2.3698 22 6 1.1075 -10.4035 -1.1997 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8718 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.7441 -7.3720 -0.8927 29 1 0.7422 -7.3725 0.8872 30 1 2.9321 -8.5364 0.8886 31 1 2.9334 -8.5355 -0.8914 32 1 1.3920 -9.9460 2.1299 33 1 0.0593 -12.0156 2.1314 34 1 -0.6114 -13.0505 0.0003 35 1 1.4024 -9.9506 -2.1348 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813099972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:36 Heat of formation + Delta-G solvation = -130.833354 kcal Electronic energy + Delta-G solvation = -18511.223885 eV Core-core repulsion = 15194.979356 eV Total energy + Delta-G solvation = -3316.244528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.17716 -40.05765 -39.42280 -36.33789 -33.75857 -33.57769 -31.17755 -30.91367 -29.19171 -26.11638 -24.15115 -23.06840 -22.07899 -21.39359 -19.82168 -17.67484 -17.21899 -16.83687 -16.49694 -16.31866 -16.17140 -15.87898 -15.37841 -14.54315 -14.47104 -14.17484 -13.62186 -13.49035 -13.34178 -12.65083 -12.47922 -12.25915 -12.12081 -11.73907 -11.60064 -11.36492 -11.19072 -10.96652 -10.65052 -10.33864 -10.05279 -9.93982 -9.58612 -9.32106 -9.18566 -9.01066 -8.38551 -6.02304 -4.07282 0.77413 0.84276 2.81583 2.97012 3.29957 3.31156 3.37557 3.40497 3.90714 4.34577 4.41056 4.44822 4.69575 4.81756 4.86308 4.91921 5.03174 5.27331 5.33126 5.36533 5.51441 5.61178 5.72164 5.76610 5.83991 5.95004 6.11058 6.16115 6.18957 6.53761 6.63662 6.92544 7.65603 7.72426 7.97211 8.24466 8.40178 8.99912 9.56836 11.08736 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.049265 B = 0.002647 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.220654 B =10576.322207 C =10675.713148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.505 6.505 13 O -0.367 6.367 14 C 0.069 3.931 15 C -0.081 4.081 16 C -0.052 4.052 17 C -0.123 4.123 18 C -0.089 4.089 19 C -0.157 4.157 20 C 0.099 3.901 21 F -0.140 7.140 22 C -0.148 4.148 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 -24.050 1.211 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.140 4.140 11 C 0.300 3.700 12 O -0.391 6.391 13 O -0.285 6.285 14 C -0.005 4.005 15 C -0.118 4.118 16 C -0.052 4.052 17 C -0.141 4.141 18 C -0.107 4.107 19 C -0.176 4.176 20 C 0.080 3.920 21 F -0.119 7.119 22 C -0.166 4.166 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.331 -23.981 1.166 24.239 hybrid contribution 0.105 0.668 -0.262 0.725 sum 3.436 -23.312 0.905 23.581 Atomic orbital electron populations 1.69993 1.06105 1.26774 1.49916 1.25028 0.94860 0.99355 0.95119 0.86536 0.79756 0.83215 0.78137 1.20596 1.21185 1.19786 1.21156 0.93072 0.90637 1.51815 0.92292 1.19022 0.93245 0.89305 0.98901 1.21766 1.00658 0.87598 1.04016 1.24786 0.87952 0.85620 0.71638 1.90643 1.15927 1.87663 1.44901 1.86531 1.42132 1.14950 1.84932 1.22835 0.93262 0.81594 1.02844 1.20535 0.97082 0.89085 1.05113 1.19548 0.97290 0.95903 0.92445 1.21212 0.98781 0.96096 0.98035 1.21030 0.96779 0.95255 0.97617 1.21183 1.03074 1.01969 0.91385 1.17696 0.99013 0.93902 0.81391 1.91509 1.89870 1.84267 1.46211 1.21114 1.00304 0.95614 0.99600 0.92835 0.95596 0.95590 0.88919 0.88938 0.91341 0.91249 0.89216 0.89386 0.84957 0.84797 0.84758 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.85 4.26 -27.89 -0.12 0.73 16 10 C -0.10 -2.08 5.75 -27.88 -0.16 -2.24 16 11 C 0.46 8.94 7.96 36.01 0.29 9.22 16 12 O -0.51 -11.54 15.73 -18.75 -0.29 -11.84 16 13 O -0.37 -5.87 10.22 -39.25 -0.40 -6.27 16 14 C 0.07 0.90 5.45 37.16 0.20 1.10 16 15 C -0.08 -0.76 5.72 -27.88 -0.16 -0.92 16 16 C -0.05 -0.47 5.13 -104.63 -0.54 -1.01 16 17 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 18 C -0.09 -0.65 10.04 -39.59 -0.40 -1.05 16 19 C -0.16 -1.29 10.03 -39.51 -0.40 -1.68 16 20 C 0.10 0.97 7.30 -39.42 -0.29 0.69 16 21 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 22 C -0.15 -1.41 9.68 -39.51 -0.38 -1.79 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 27 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 29 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -32.51 316.16 -7.53 -40.04 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -4.60 Total: -3.52 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.75 Total: -11.80 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.70 Total: -18.10 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.51 -7.53 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813099972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.793 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds