Wall clock time and date at job start Mon Mar 30 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38368 * 119.91613 * 2 1 4 4 C 1.38462 * 120.30277 * 179.97438 * 3 2 1 5 5 Cl 1.73606 * 119.93566 * 180.02562 * 4 3 2 6 6 C 1.38069 * 120.13034 * 359.97438 * 4 3 2 7 7 C 1.39641 * 119.82727 * 0.02562 * 6 4 3 8 8 C 1.47499 * 120.14906 * 179.97438 * 7 6 4 9 9 N 1.29744 * 119.99960 * 359.97438 * 8 7 6 10 10 N 1.40104 * 119.99690 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99589 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47214 * 330.00593 * 11 10 9 13 13 C 1.52996 * 109.46640 * 90.00360 * 11 10 9 14 14 C 1.50704 * 109.46981 * 210.00324 * 11 10 9 15 15 H 1.07998 * 119.99806 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99508 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99424 * 179.97438 * 16 14 11 18 18 Si 1.86791 * 120.00495 * 359.97438 * 16 14 11 19 19 H 1.48498 * 109.47053 * 89.99820 * 18 16 14 20 20 H 1.48503 * 109.47324 * 209.99940 * 18 16 14 21 21 H 1.48505 * 109.47098 * 330.00194 * 18 16 14 22 22 C 1.37919 * 119.91284 * 180.26198 * 2 1 3 23 23 H 1.08998 * 109.47156 * 89.99710 * 1 2 3 24 24 H 1.08993 * 109.47348 * 209.99810 * 1 2 3 25 25 H 1.08996 * 109.46945 * 329.99817 * 1 2 3 26 26 H 1.08006 * 119.84561 * 0.02722 * 3 2 1 27 27 H 1.07998 * 120.08570 * 180.02562 * 6 4 3 28 28 H 1.08009 * 119.99822 * 180.27774 * 8 7 6 29 29 H 0.96999 * 120.00331 * 0.02562 * 10 9 8 30 30 H 1.09002 * 109.46779 * 179.97438 * 13 11 10 31 31 H 1.08997 * 109.47647 * 299.99729 * 13 11 10 32 32 H 1.09000 * 109.47127 * 60.00180 * 13 11 10 33 33 H 0.97002 * 119.99790 * 180.02562 * 17 16 14 34 34 H 1.08001 * 120.07189 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1993 0.0000 4 6 3.5817 1.2087 0.0005 5 17 4.4378 2.7189 0.0012 6 6 4.2828 0.0192 0.0016 7 6 3.5918 -1.1943 0.0016 8 6 4.3337 -2.4691 0.0022 9 7 5.6311 -2.4647 0.0022 10 7 6.3357 -3.6757 0.0033 11 6 7.8008 -3.6707 0.0038 12 1 8.1613 -2.7797 -0.5104 13 6 8.3101 -3.6680 1.4465 14 6 8.3076 -4.8999 -0.7057 15 1 7.6083 -5.6132 -1.1163 16 6 9.6639 -5.1137 -0.8305 17 7 10.1062 -6.1867 -1.4492 18 14 10.8733 -3.8796 -0.1209 19 1 11.1952 -4.2514 1.2803 20 1 12.1171 -3.8827 -0.9321 21 1 10.2689 -2.5233 -0.1466 22 6 2.1948 -1.1954 -0.0055 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6532 2.1324 0.0004 27 1 5.3627 0.0273 0.0024 28 1 3.7968 -3.4063 -0.0024 29 1 5.8536 -4.5174 0.0036 30 1 9.4001 -3.6648 1.4470 31 1 7.9435 -2.7790 1.9597 32 1 7.9496 -4.5590 1.9607 33 1 11.0604 -6.3373 -1.5367 34 1 1.6545 -2.1306 -0.0093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814881870.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:37 Heat of formation + Delta-G solvation = 53.151580 kcal Electronic energy + Delta-G solvation = -16752.139471 eV Core-core repulsion = 13904.502254 eV Total energy + Delta-G solvation = -2847.637217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44929 -36.79544 -36.44126 -34.43970 -32.74606 -31.76692 -30.74570 -27.88428 -26.96401 -25.19541 -23.43171 -22.06902 -20.52502 -19.83162 -17.25846 -16.68743 -16.19964 -15.64733 -15.17777 -14.94641 -14.14842 -14.01108 -13.35396 -13.27119 -13.13388 -12.94638 -12.55775 -12.52315 -12.25809 -11.84153 -11.55859 -11.48778 -11.37977 -10.91064 -10.84589 -10.74747 -10.25840 -9.80611 -9.61644 -9.27256 -8.98350 -8.70495 -8.67331 -7.07683 -6.24356 -4.27207 0.93206 1.20387 2.11146 2.75520 3.19493 3.30992 3.32796 3.50946 3.82989 4.26733 4.64024 4.77843 5.01237 5.09788 5.15232 5.18968 5.33003 5.40907 5.61106 5.63682 5.86991 5.90227 6.20055 6.25357 6.32854 6.35432 6.40420 6.52153 6.65709 6.78593 6.90088 7.26749 7.45872 7.88116 8.34605 8.75271 9.04493 9.35434 10.88074 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.003939 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.343799 B = 7106.730239 C = 7944.631421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.075 4.075 3 C -0.123 4.123 4 C -0.027 4.027 5 Cl -0.077 7.077 6 C -0.099 4.099 7 C 0.011 3.989 8 C -0.011 4.011 9 N -0.192 5.192 10 N -0.612 5.612 11 C 0.270 3.730 12 H 0.043 0.957 13 C -0.165 4.165 14 C -0.535 4.535 15 H 0.079 0.921 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.293 1.293 21 H -0.263 1.263 22 C -0.110 4.110 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.142 0.858 28 H 0.109 0.891 29 H 0.377 0.623 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.268 0.732 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.011 13.259 4.062 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.075 4.075 3 C -0.143 4.143 4 C -0.054 4.054 5 Cl -0.048 7.048 6 C -0.120 4.120 7 C 0.009 3.991 8 C -0.218 4.218 9 N -0.005 5.005 10 N -0.348 5.348 11 C 0.166 3.834 12 H 0.061 0.939 13 C -0.224 4.224 14 C -0.574 4.574 15 H 0.097 0.903 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.188 1.188 22 C -0.131 4.131 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.146 0.854 27 H 0.160 0.840 28 H 0.126 0.874 29 H 0.214 0.786 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.704 13.813 3.992 21.292 hybrid contribution 0.144 -0.394 0.360 0.552 sum -15.560 13.419 4.352 21.003 Atomic orbital electron populations 1.20771 0.90612 1.02917 1.02513 1.19654 0.96105 0.92190 0.99598 1.20868 0.91811 0.98435 1.03177 1.20789 0.92336 0.86907 1.05323 1.98362 1.77579 1.31879 1.97012 1.21270 1.01282 0.89728 0.99739 1.18322 0.92139 0.91029 0.97655 1.23423 0.90949 0.95609 1.11862 1.73879 1.09050 1.13963 1.03585 1.48651 1.06107 0.99919 1.80168 1.18913 0.73834 0.98579 0.92098 0.93926 1.22586 0.99811 0.99999 0.99967 1.21042 0.93004 1.06308 1.37041 0.90326 1.24823 0.97972 0.95245 0.94506 1.69869 1.14797 1.26384 1.41835 0.86833 0.80417 0.82454 0.78459 1.20265 1.22078 1.18812 1.21116 0.92756 0.97945 1.01257 0.90988 0.91254 0.91485 0.85393 0.84042 0.87378 0.78583 0.93440 0.94691 0.92861 0.92203 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.08 -0.75 5.87 -104.69 -0.61 -1.37 16 3 C -0.12 -1.32 9.47 -39.45 -0.37 -1.70 16 4 C -0.03 -0.34 6.31 -39.56 -0.25 -0.59 16 5 Cl -0.08 -0.93 28.95 -51.86 -1.50 -2.43 16 6 C -0.10 -1.42 9.36 -39.12 -0.37 -1.79 16 7 C 0.01 0.15 5.87 -105.05 -0.62 -0.46 16 8 C -0.01 -0.17 10.75 -14.66 -0.16 -0.32 16 9 N -0.19 -3.64 10.61 32.16 0.34 -3.30 16 10 N -0.61 -12.71 6.10 -5.88 -0.04 -12.74 16 11 C 0.27 6.37 2.82 -69.08 -0.20 6.18 16 12 H 0.04 1.07 7.20 -51.93 -0.37 0.69 16 13 C -0.16 -3.60 9.00 37.16 0.33 -3.27 16 14 C -0.54 -14.55 9.32 -34.44 -0.32 -14.87 16 15 H 0.08 2.29 8.03 -52.49 -0.42 1.87 16 16 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 17 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 18 Si 0.89 21.34 24.37 -169.99 -4.14 17.19 16 19 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 22 C -0.11 -1.22 9.44 -39.15 -0.37 -1.59 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 27 H 0.14 2.21 7.55 -52.49 -0.40 1.81 16 28 H 0.11 1.47 8.02 -52.48 -0.42 1.05 16 29 H 0.38 7.31 8.58 -182.60 -1.57 5.74 16 30 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -29.18 305.84 -8.11 -37.29 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.48 Total: 3.10 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -2.67 Total: -18.09 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 1.08 Total: -41.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.19 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.18 -8.11 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814881870.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.442 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds