Wall clock time and date at job start Mon Mar 30 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38368 * 119.91613 * 2 1 4 4 C 1.38462 * 120.30277 * 179.97438 * 3 2 1 5 5 Cl 1.73606 * 119.93566 * 180.02562 * 4 3 2 6 6 C 1.38069 * 120.13034 * 359.97438 * 4 3 2 7 7 C 1.39641 * 119.82727 * 0.02562 * 6 4 3 8 8 C 1.47499 * 120.14906 * 179.97438 * 7 6 4 9 9 N 1.29744 * 119.99960 * 359.97438 * 8 7 6 10 10 N 1.40104 * 119.99690 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99589 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47214 * 330.00593 * 11 10 9 13 13 C 1.52996 * 109.46640 * 90.00360 * 11 10 9 14 14 C 1.50704 * 109.46981 * 210.00324 * 11 10 9 15 15 H 1.07998 * 119.99806 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99508 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99424 * 179.97438 * 16 14 11 18 18 Si 1.86791 * 120.00495 * 359.97438 * 16 14 11 19 19 H 1.48498 * 109.47053 * 89.99820 * 18 16 14 20 20 H 1.48503 * 109.47324 * 209.99940 * 18 16 14 21 21 H 1.48505 * 109.47098 * 330.00194 * 18 16 14 22 22 C 1.37919 * 119.91284 * 180.26198 * 2 1 3 23 23 H 1.08998 * 109.47156 * 89.99710 * 1 2 3 24 24 H 1.08993 * 109.47348 * 209.99810 * 1 2 3 25 25 H 1.08996 * 109.46945 * 329.99817 * 1 2 3 26 26 H 1.08006 * 119.84561 * 0.02722 * 3 2 1 27 27 H 1.07998 * 120.08570 * 180.02562 * 6 4 3 28 28 H 1.08009 * 119.99822 * 180.27774 * 8 7 6 29 29 H 0.96999 * 120.00331 * 0.02562 * 10 9 8 30 30 H 1.09002 * 109.46779 * 179.97438 * 13 11 10 31 31 H 1.08997 * 109.47647 * 299.99729 * 13 11 10 32 32 H 1.09000 * 109.47127 * 60.00180 * 13 11 10 33 33 H 0.97002 * 119.99790 * 180.02562 * 17 16 14 34 34 H 1.08001 * 120.07189 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1993 0.0000 4 6 3.5817 1.2087 0.0005 5 17 4.4378 2.7189 0.0012 6 6 4.2828 0.0192 0.0016 7 6 3.5918 -1.1943 0.0016 8 6 4.3337 -2.4691 0.0022 9 7 5.6311 -2.4647 0.0022 10 7 6.3357 -3.6757 0.0033 11 6 7.8008 -3.6707 0.0038 12 1 8.1613 -2.7797 -0.5104 13 6 8.3101 -3.6680 1.4465 14 6 8.3076 -4.8999 -0.7057 15 1 7.6083 -5.6132 -1.1163 16 6 9.6639 -5.1137 -0.8305 17 7 10.1062 -6.1867 -1.4492 18 14 10.8733 -3.8796 -0.1209 19 1 11.1952 -4.2514 1.2803 20 1 12.1171 -3.8827 -0.9321 21 1 10.2689 -2.5233 -0.1466 22 6 2.1948 -1.1954 -0.0055 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6532 2.1324 0.0004 27 1 5.3627 0.0273 0.0024 28 1 3.7968 -3.4063 -0.0024 29 1 5.8536 -4.5174 0.0036 30 1 9.4001 -3.6648 1.4470 31 1 7.9435 -2.7790 1.9597 32 1 7.9496 -4.5590 1.9607 33 1 11.0604 -6.3373 -1.5367 34 1 1.6545 -2.1306 -0.0093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814881870.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:37 Heat of formation + Delta-G solvation = 35.676672 kcal Electronic energy + Delta-G solvation = -16752.897240 eV Core-core repulsion = 13904.502254 eV Total energy + Delta-G solvation = -2848.394985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39892 -38.22990 -37.44843 -36.03706 -34.13841 -33.18440 -31.97360 -29.27627 -27.75419 -27.18958 -24.64594 -23.00453 -22.28370 -21.01042 -19.02241 -17.76385 -17.66588 -17.19090 -16.37179 -16.04142 -15.56191 -15.11152 -14.92430 -14.64199 -14.20144 -14.11929 -14.08273 -13.63421 -13.44124 -13.11167 -12.96930 -12.75407 -12.43422 -12.32549 -12.17358 -11.93864 -11.82267 -11.53595 -11.34423 -11.00269 -10.85217 -10.02640 -9.57914 -8.52510 -8.38662 -6.45944 -0.08437 0.26750 1.16145 1.29118 1.35913 1.45795 1.61110 2.06234 2.26140 2.82083 2.97132 3.73080 3.84512 4.15923 4.20647 4.30918 4.42345 4.43693 4.53828 4.69570 4.76255 4.78341 4.94599 4.95495 4.98251 5.17212 5.29126 5.31755 5.40512 5.48065 5.53838 5.70073 5.88415 6.05253 6.43559 6.60803 7.20601 7.64283 8.77076 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.003939 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.343799 B = 7106.730239 C = 7944.631421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 C -0.113 4.113 4 C -0.040 4.040 5 Cl -0.077 7.077 6 C -0.114 4.114 7 C -0.018 4.018 8 C 0.029 3.971 9 N -0.238 5.238 10 N -0.634 5.634 11 C 0.279 3.721 12 H 0.026 0.974 13 C -0.157 4.157 14 C -0.537 4.537 15 H 0.044 0.956 16 C 0.025 3.975 17 N -0.938 5.938 18 Si 0.948 3.052 19 H -0.259 1.259 20 H -0.293 1.293 21 H -0.253 1.253 22 C -0.097 4.097 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.152 0.848 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.378 0.622 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.271 0.729 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.581 15.120 5.081 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 C -0.133 4.133 4 C -0.066 4.066 5 Cl -0.049 7.049 6 C -0.136 4.136 7 C -0.021 4.021 8 C -0.181 4.181 9 N -0.048 5.048 10 N -0.370 5.370 11 C 0.174 3.826 12 H 0.043 0.957 13 C -0.216 4.216 14 C -0.576 4.576 15 H 0.062 0.938 16 C -0.174 4.174 17 N -0.577 5.577 18 Si 0.774 3.226 19 H -0.185 1.185 20 H -0.220 1.220 21 H -0.177 1.177 22 C -0.118 4.118 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.170 0.830 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.215 0.785 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.295 15.690 5.022 24.619 hybrid contribution 0.584 -0.853 -0.014 1.034 sum -17.710 14.837 5.008 23.640 Atomic orbital electron populations 1.20864 0.87773 1.04359 1.03690 1.20079 0.98006 0.91291 0.97757 1.21248 0.90992 0.99996 1.01022 1.20893 0.93207 0.86432 1.06089 1.98360 1.77833 1.31615 1.97050 1.21197 1.00478 0.90950 1.00936 1.18393 0.93338 0.89889 1.00466 1.24030 0.90360 0.97436 1.06277 1.73934 1.10501 1.12798 1.07544 1.48193 1.05009 1.00666 1.83163 1.18509 0.75968 0.95644 0.92473 0.95657 1.22459 0.99359 1.00941 0.98823 1.21297 0.92709 1.06880 1.36737 0.93798 1.25651 0.99911 0.96986 0.94882 1.70000 1.15379 1.28555 1.43801 0.85871 0.77846 0.80455 0.78412 1.18502 1.22003 1.17734 1.21446 0.91478 0.99750 0.99110 0.89776 0.89913 0.90102 0.83034 0.86303 0.85184 0.78467 0.93876 0.93013 0.92603 0.91997 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.24 0.71 -0.26 16 2 C -0.07 -1.14 5.87 -19.91 -0.12 -1.25 16 3 C -0.11 -2.07 9.47 22.35 0.21 -1.85 16 4 C -0.04 -0.94 6.31 22.28 0.14 -0.80 16 5 Cl -0.08 -1.79 28.95 -2.72 -0.08 -1.87 16 6 C -0.11 -3.21 9.36 22.57 0.21 -3.00 16 7 C -0.02 -0.47 5.87 -20.14 -0.12 -0.59 16 8 C 0.03 0.86 10.75 87.44 0.94 1.80 16 9 N -0.24 -9.08 10.61 -52.15 -0.55 -9.63 16 10 N -0.63 -26.83 6.10 -172.51 -1.05 -27.88 16 11 C 0.28 13.43 2.82 44.24 0.12 13.56 16 12 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 13 C -0.16 -6.78 9.00 71.98 0.65 -6.13 16 14 C -0.54 -30.25 9.32 25.60 0.24 -30.01 16 15 H 0.04 2.70 8.03 -2.91 -0.02 2.67 16 16 C 0.03 1.43 5.45 84.65 0.46 1.89 16 17 N -0.94 -57.26 13.96 21.45 0.30 -56.96 16 18 Si 0.95 44.28 24.37 68.60 1.67 45.95 16 19 H -0.26 -11.37 6.87 99.48 0.68 -10.68 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 22 C -0.10 -1.82 9.44 22.55 0.21 -1.61 16 23 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 25 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 26 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 27 H 0.12 3.83 7.55 -2.91 -0.02 3.81 16 28 H 0.13 3.25 8.02 -2.91 -0.02 3.23 16 29 H 0.38 15.08 8.58 -213.32 -1.83 13.25 16 30 H 0.04 1.87 3.27 -2.39 -0.01 1.86 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -65.19 305.84 3.15 -62.04 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.80 Total: 16.61 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.67 Total: -28.26 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -1.31 Total: -94.47 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.67 Total: 45.95 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -65.19 3.15 -62.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814881870.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.717 kcal (2) G-P(sol) polarization free energy of solvation -65.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds