Wall clock time and date at job start Mon Mar 30 2020 07:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86799 * 119.99838 * 2 1 4 4 H 1.48499 * 109.47326 * 270.27532 * 3 2 1 5 5 H 1.48500 * 109.47202 * 30.27633 * 3 2 1 6 6 H 1.48498 * 109.46835 * 150.27439 * 3 2 1 7 7 C 1.38997 * 120.00123 * 180.28093 * 2 1 3 8 8 H 1.07994 * 120.00286 * 191.05715 * 7 2 1 9 9 N 1.37364 * 120.00169 * 11.04669 * 7 2 1 10 10 C 1.37450 * 125.06464 * 20.77999 * 9 7 2 11 11 C 1.35091 * 108.94401 * 179.97438 * 10 9 7 12 12 C 1.44916 * 106.25835 * 359.97438 * 11 10 9 13 13 C 1.34620 * 125.07057 * 200.47526 * 9 7 2 14 14 C 1.50722 * 131.42727 * 0.97524 * 13 9 7 15 15 C 1.52938 * 108.65725 * 149.97428 * 14 13 9 16 16 N 1.45524 * 113.23032 * 44.93513 * 15 14 13 17 17 C 1.31015 * 123.51744 * 324.82459 * 16 15 14 18 18 C 1.48168 * 121.49207 * 183.41137 * 17 16 15 19 19 C 1.39461 * 120.13064 * 21.07470 * 18 17 16 20 20 C 1.37983 * 119.86216 * 179.76794 * 19 18 17 21 21 C 1.38348 * 120.13230 * 0.51625 * 20 19 18 22 22 C 1.38341 * 120.27010 * 359.73448 * 21 20 19 23 23 C 1.37990 * 120.13104 * 0.02562 * 22 21 20 24 24 H 0.96996 * 119.99853 * 359.72846 * 1 2 3 25 25 H 1.08002 * 125.52187 * 359.94965 * 10 9 7 26 26 H 1.07994 * 126.86657 * 179.97438 * 11 10 9 27 27 H 1.08998 * 109.73877 * 30.12191 * 14 13 9 28 28 H 1.09000 * 109.40467 * 269.63038 * 14 13 9 29 29 H 1.09006 * 108.73499 * 283.97307 * 15 14 13 30 30 H 1.08996 * 108.73699 * 165.90775 * 15 14 13 31 31 H 1.07991 * 120.06810 * 0.02883 * 19 18 17 32 32 H 1.08000 * 119.93780 * 180.25383 * 20 19 18 33 33 H 1.08003 * 119.86772 * 179.72239 * 21 20 19 34 34 H 1.07996 * 119.93900 * 180.02562 * 22 21 20 35 35 H 1.08002 * 120.06603 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4887 2.0498 -1.4000 5 1 1.4474 2.6510 0.7059 6 1 3.5474 1.4385 0.6942 7 6 2.0080 -1.2037 -0.0059 8 1 3.0729 -1.2133 0.1734 9 7 1.3404 -2.3812 -0.2396 10 6 0.1203 -2.4867 -0.8637 11 6 -0.2314 -3.7897 -0.9217 12 6 0.8445 -4.5288 -0.2924 13 6 1.7861 -3.6044 0.1032 14 6 3.0412 -4.0462 0.8111 15 6 2.7402 -5.3306 1.5848 16 7 1.9777 -6.3004 0.8129 17 6 1.0531 -5.9688 -0.0541 18 6 0.2519 -6.9949 -0.7616 19 6 0.1373 -8.2805 -0.2335 20 6 -0.6142 -9.2304 -0.8945 21 6 -1.2446 -8.9126 -2.0843 22 6 -1.1304 -7.6405 -2.6158 23 6 -0.3856 -6.6806 -1.9615 24 1 -0.4850 0.8400 0.0040 25 1 -0.4628 -1.6616 -1.2453 26 1 -1.1340 -4.1987 -1.3512 27 1 3.3663 -3.2695 1.5033 28 1 3.8236 -4.2362 0.0764 29 1 2.1754 -5.0751 2.4814 30 1 3.6831 -5.7868 1.8864 31 1 0.6323 -8.5309 0.6931 32 1 -0.7071 -10.2252 -0.4844 33 1 -1.8280 -9.6607 -2.6004 34 1 -1.6250 -7.3981 -3.5447 35 1 -0.2975 -5.6877 -2.3772 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821282745.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:43 Heat of formation + Delta-G solvation = 82.967059 kcal Electronic energy + Delta-G solvation = -19095.701414 eV Core-core repulsion = 16251.789943 eV Total energy + Delta-G solvation = -2843.911471 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.10967 -38.67108 -36.17085 -33.36612 -32.26465 -30.70612 -29.96982 -29.09777 -27.30383 -25.09273 -23.21115 -22.37958 -21.57936 -20.16901 -19.80978 -17.77987 -16.56228 -16.06111 -15.55618 -15.05802 -14.87904 -14.25459 -14.11275 -13.49813 -13.21426 -13.02397 -12.94158 -12.88649 -12.47023 -12.04666 -11.76241 -11.56697 -11.31331 -11.23261 -10.87157 -10.77754 -10.63874 -10.58641 -10.18486 -10.01310 -9.28211 -8.61557 -8.38993 -8.15899 -7.52690 -6.86685 -6.51673 -4.51050 1.30424 1.74323 2.63627 2.91853 2.96906 3.00717 3.70511 3.79808 4.09396 4.58266 4.70916 4.82758 4.84720 5.21289 5.23440 5.39665 5.63318 5.72236 5.82494 5.84585 5.98648 6.02457 6.21999 6.30303 6.33098 6.42719 6.55571 6.59224 6.71562 6.78479 6.86525 6.92331 7.02146 7.07960 7.28323 7.43502 7.56637 7.75457 8.29597 8.39425 8.72435 9.00836 9.40374 10.16454 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031336 B = 0.005113 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.328867 B = 5475.019744 C = 6202.684447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.051 3.949 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.356 4.356 8 H 0.107 0.893 9 N -0.225 5.225 10 C -0.006 4.006 11 C -0.203 4.203 12 C -0.257 4.257 13 C -0.015 4.015 14 C -0.058 4.058 15 C 0.070 3.930 16 N -0.576 5.576 17 C 0.301 3.699 18 C -0.029 4.029 19 C -0.084 4.084 20 C -0.135 4.135 21 C -0.119 4.119 22 C -0.131 4.131 23 C -0.087 4.087 24 H 0.281 0.719 25 H 0.166 0.834 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 -8.557 -2.392 8.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.160 4.160 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.484 4.484 8 H 0.125 0.875 9 N 0.118 4.882 10 C -0.140 4.140 11 C -0.227 4.227 12 C -0.268 4.268 13 C -0.140 4.140 14 C -0.097 4.097 15 C -0.061 4.061 16 N -0.287 5.287 17 C 0.119 3.881 18 C -0.030 4.030 19 C -0.104 4.104 20 C -0.153 4.153 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.107 4.107 24 H 0.092 0.908 25 H 0.183 0.817 26 H 0.140 0.860 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.105 -8.754 -1.837 8.946 hybrid contribution 0.121 1.851 -0.065 1.856 sum 0.016 -6.904 -1.902 7.161 Atomic orbital electron populations 1.69899 1.06449 1.29051 1.41249 1.25556 0.95638 1.00699 0.94128 0.85733 0.79405 0.79414 0.79123 1.19408 1.20115 1.18842 1.19980 0.94208 0.82577 1.51653 0.87542 1.39589 1.13169 1.03607 1.31790 1.22150 0.90092 0.96908 1.04802 1.21197 0.99456 0.92563 1.09510 1.19434 0.99309 0.91158 1.16888 1.20015 0.99169 0.85801 1.09050 1.20228 0.93901 0.97260 0.98346 1.21679 0.97990 0.90188 0.96208 1.71352 1.10141 1.36626 1.10616 1.20728 0.88930 0.88920 0.89503 1.18585 0.97335 0.92385 0.94721 1.21329 0.97018 0.92021 0.99995 1.21036 0.98935 0.99253 0.96075 1.21164 0.99827 0.96645 0.96179 1.21061 1.00118 0.93505 1.00254 1.21581 0.94938 1.00085 0.94072 0.90846 0.81690 0.86007 0.90954 0.92077 0.92014 0.90459 0.85357 0.86362 0.86583 0.86133 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.28 10.85 55.50 0.60 -20.67 16 2 C 0.05 1.24 5.35 -17.50 -0.09 1.15 16 3 Si 0.94 18.53 29.57 -169.99 -5.03 13.50 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.36 -9.15 9.86 -14.79 -0.15 -9.30 16 8 H 0.11 2.60 7.86 -52.49 -0.41 2.19 16 9 N -0.23 -5.89 2.85 -57.37 -0.16 -6.05 16 10 C -0.01 -0.16 9.98 -16.15 -0.16 -0.32 16 11 C -0.20 -4.71 9.47 -38.06 -0.36 -5.07 16 12 C -0.26 -6.04 5.88 -103.69 -0.61 -6.65 16 13 C -0.01 -0.36 6.72 -81.53 -0.55 -0.90 16 14 C -0.06 -1.21 6.30 -27.90 -0.18 -1.39 16 15 C 0.07 1.35 6.95 -4.60 -0.03 1.32 16 16 N -0.58 -11.96 10.17 -56.13 -0.57 -12.53 16 17 C 0.30 6.38 6.84 -80.39 -0.55 5.83 16 18 C -0.03 -0.54 5.85 -104.91 -0.61 -1.15 16 19 C -0.08 -1.34 9.60 -39.22 -0.38 -1.72 16 20 C -0.13 -1.78 10.03 -39.63 -0.40 -2.18 16 21 C -0.12 -1.49 10.04 -39.50 -0.40 -1.88 16 22 C -0.13 -1.78 10.03 -39.63 -0.40 -2.18 16 23 C -0.09 -1.44 8.93 -39.22 -0.35 -1.79 16 24 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 25 H 0.17 4.24 6.37 -52.49 -0.33 3.90 16 26 H 0.12 2.48 7.04 -52.49 -0.37 2.11 16 27 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.13 2.01 7.79 -52.49 -0.41 1.61 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.14 2.35 5.72 -52.49 -0.30 2.05 16 LS Contribution 296.43 15.07 4.47 4.47 Total: -1.00 -28.28 296.43 -9.82 -38.10 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -3.92 Total: 9.41 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -5.21 Total: -26.23 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: -0.13 Total: -39.25 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.28 -9.82 -38.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821282745.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.066 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds