Wall clock time and date at job start Mon Mar 30 2020 07:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86799 * 119.99838 * 2 1 4 4 H 1.48499 * 109.47326 * 270.27532 * 3 2 1 5 5 H 1.48500 * 109.47202 * 30.27633 * 3 2 1 6 6 H 1.48498 * 109.46835 * 150.27439 * 3 2 1 7 7 C 1.38997 * 120.00123 * 180.28093 * 2 1 3 8 8 H 1.07994 * 120.00286 * 191.05715 * 7 2 1 9 9 N 1.37364 * 120.00169 * 11.04669 * 7 2 1 10 10 C 1.37450 * 125.06464 * 20.77999 * 9 7 2 11 11 C 1.35091 * 108.94401 * 179.97438 * 10 9 7 12 12 C 1.44916 * 106.25835 * 359.97438 * 11 10 9 13 13 C 1.34620 * 125.07057 * 200.47526 * 9 7 2 14 14 C 1.50722 * 131.42727 * 0.97524 * 13 9 7 15 15 C 1.52938 * 108.65725 * 149.97428 * 14 13 9 16 16 N 1.45524 * 113.23032 * 44.93513 * 15 14 13 17 17 C 1.31015 * 123.51744 * 324.82459 * 16 15 14 18 18 C 1.48168 * 121.49207 * 183.41137 * 17 16 15 19 19 C 1.39461 * 120.13064 * 21.07470 * 18 17 16 20 20 C 1.37983 * 119.86216 * 179.76794 * 19 18 17 21 21 C 1.38348 * 120.13230 * 0.51625 * 20 19 18 22 22 C 1.38341 * 120.27010 * 359.73448 * 21 20 19 23 23 C 1.37990 * 120.13104 * 0.02562 * 22 21 20 24 24 H 0.96996 * 119.99853 * 359.72846 * 1 2 3 25 25 H 1.08002 * 125.52187 * 359.94965 * 10 9 7 26 26 H 1.07994 * 126.86657 * 179.97438 * 11 10 9 27 27 H 1.08998 * 109.73877 * 30.12191 * 14 13 9 28 28 H 1.09000 * 109.40467 * 269.63038 * 14 13 9 29 29 H 1.09006 * 108.73499 * 283.97307 * 15 14 13 30 30 H 1.08996 * 108.73699 * 165.90775 * 15 14 13 31 31 H 1.07991 * 120.06810 * 0.02883 * 19 18 17 32 32 H 1.08000 * 119.93780 * 180.25383 * 20 19 18 33 33 H 1.08003 * 119.86772 * 179.72239 * 21 20 19 34 34 H 1.07996 * 119.93900 * 180.02562 * 22 21 20 35 35 H 1.08002 * 120.06603 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4887 2.0498 -1.4000 5 1 1.4474 2.6510 0.7059 6 1 3.5474 1.4385 0.6942 7 6 2.0080 -1.2037 -0.0059 8 1 3.0729 -1.2133 0.1734 9 7 1.3404 -2.3812 -0.2396 10 6 0.1203 -2.4867 -0.8637 11 6 -0.2314 -3.7897 -0.9217 12 6 0.8445 -4.5288 -0.2924 13 6 1.7861 -3.6044 0.1032 14 6 3.0412 -4.0462 0.8111 15 6 2.7402 -5.3306 1.5848 16 7 1.9777 -6.3004 0.8129 17 6 1.0531 -5.9688 -0.0541 18 6 0.2519 -6.9949 -0.7616 19 6 0.1373 -8.2805 -0.2335 20 6 -0.6142 -9.2304 -0.8945 21 6 -1.2446 -8.9126 -2.0843 22 6 -1.1304 -7.6405 -2.6158 23 6 -0.3856 -6.6806 -1.9615 24 1 -0.4850 0.8400 0.0040 25 1 -0.4628 -1.6616 -1.2453 26 1 -1.1340 -4.1987 -1.3512 27 1 3.3663 -3.2695 1.5033 28 1 3.8236 -4.2362 0.0764 29 1 2.1754 -5.0751 2.4814 30 1 3.6831 -5.7868 1.8864 31 1 0.6323 -8.5309 0.6931 32 1 -0.7071 -10.2252 -0.4844 33 1 -1.8280 -9.6607 -2.6004 34 1 -1.6250 -7.3981 -3.5447 35 1 -0.2975 -5.6877 -2.3772 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821282745.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:42 Heat of formation + Delta-G solvation = 68.512802 kcal Electronic energy + Delta-G solvation = -19096.328197 eV Core-core repulsion = 16251.789943 eV Total energy + Delta-G solvation = -2844.538254 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.91159 -39.87975 -37.77638 -35.21685 -33.74896 -32.00207 -31.52012 -30.63327 -28.98337 -26.95521 -24.70667 -23.72628 -22.90019 -21.83085 -21.57842 -19.39407 -18.28199 -17.47546 -17.26478 -16.60543 -16.30278 -15.64453 -15.57762 -14.99832 -14.81734 -14.71039 -14.42853 -14.17727 -13.77821 -13.68194 -13.46252 -13.19170 -12.92308 -12.78152 -12.56638 -12.30836 -12.15878 -11.81475 -11.75894 -11.57797 -11.03062 -10.02071 -9.73046 -9.58261 -9.26063 -8.71095 -8.37491 -6.45740 0.00736 0.62514 1.07442 1.33079 1.36834 1.48792 1.94445 2.10006 2.57509 2.93314 3.01782 3.15063 3.30589 4.00492 4.02395 4.19715 4.25888 4.31839 4.37369 4.43799 4.60325 4.66244 4.74747 4.80247 4.86889 4.95928 5.01699 5.01897 5.19543 5.23012 5.28774 5.52389 5.58311 5.69073 5.75299 5.80910 5.96997 6.20352 6.46045 6.50474 7.09692 7.13075 7.51390 8.33277 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031336 B = 0.005113 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.328867 B = 5475.019744 C = 6202.684447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.010 3.990 3 Si 1.013 2.987 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.390 4.390 8 H 0.110 0.890 9 N -0.244 5.244 10 C -0.036 4.036 11 C -0.197 4.197 12 C -0.267 4.267 13 C -0.043 4.043 14 C -0.054 4.054 15 C 0.068 3.932 16 N -0.580 5.580 17 C 0.293 3.707 18 C -0.063 4.063 19 C -0.093 4.093 20 C -0.129 4.129 21 C -0.106 4.106 22 C -0.129 4.129 23 C -0.103 4.103 24 H 0.287 0.713 25 H 0.154 0.846 26 H 0.144 0.856 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 -10.254 -2.865 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.198 4.198 3 Si 0.833 3.167 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.517 4.517 8 H 0.128 0.872 9 N 0.100 4.900 10 C -0.170 4.170 11 C -0.221 4.221 12 C -0.277 4.277 13 C -0.168 4.168 14 C -0.093 4.093 15 C -0.062 4.062 16 N -0.291 5.291 17 C 0.111 3.889 18 C -0.064 4.064 19 C -0.113 4.113 20 C -0.147 4.147 21 C -0.124 4.124 22 C -0.147 4.147 23 C -0.123 4.123 24 H 0.097 0.903 25 H 0.172 0.828 26 H 0.161 0.839 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.142 0.858 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.269 -10.468 -2.305 10.722 hybrid contribution 0.095 2.218 0.045 2.220 sum -0.174 -8.250 -2.260 8.556 Atomic orbital electron populations 1.69991 1.07990 1.30279 1.41631 1.26589 0.96441 1.03856 0.92883 0.84654 0.78203 0.74514 0.79342 1.18781 1.19428 1.17960 1.20373 0.94747 0.83357 1.53215 0.87199 1.39822 1.13521 1.04275 1.32406 1.22196 0.90785 0.97486 1.06493 1.21451 1.00106 0.91812 1.08773 1.19871 0.98996 0.92641 1.16184 1.20775 1.00831 0.85705 1.09529 1.20302 0.92591 0.98031 0.98401 1.21819 0.99243 0.89619 0.95566 1.71401 1.10019 1.36876 1.10804 1.21143 0.89245 0.88605 0.89862 1.18624 0.98984 0.92868 0.95915 1.21397 0.97893 0.91733 1.00262 1.21422 0.97348 0.99956 0.95928 1.21649 0.98528 0.96748 0.95492 1.21393 0.99019 0.93383 1.00870 1.21561 0.96182 1.00379 0.94158 0.90298 0.82829 0.83851 0.90537 0.91514 0.92415 0.87352 0.85788 0.83027 0.82566 0.83421 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.50 10.85 21.66 0.24 -45.27 16 2 C 0.01 0.49 5.35 84.95 0.45 0.95 16 3 Si 1.01 38.12 29.57 68.60 2.03 40.15 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 6 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.39 -20.69 9.86 84.01 0.83 -19.86 16 8 H 0.11 5.52 7.86 -2.91 -0.02 5.50 16 9 N -0.24 -13.25 2.85 -335.41 -0.95 -14.20 16 10 C -0.04 -1.94 9.98 83.09 0.83 -1.11 16 11 C -0.20 -9.49 9.47 23.26 0.22 -9.27 16 12 C -0.27 -12.91 5.88 -19.26 -0.11 -13.02 16 13 C -0.04 -2.19 6.72 42.02 0.28 -1.90 16 14 C -0.05 -2.29 6.30 29.83 0.19 -2.10 16 15 C 0.07 2.60 6.95 86.54 0.60 3.20 16 16 N -0.58 -24.07 10.17 -331.48 -3.37 -27.44 16 17 C 0.29 12.63 6.84 44.33 0.30 12.93 16 18 C -0.06 -2.28 5.85 -20.05 -0.12 -2.40 16 19 C -0.09 -2.83 9.60 22.50 0.22 -2.61 16 20 C -0.13 -2.93 10.03 22.24 0.22 -2.71 16 21 C -0.11 -2.17 10.04 22.32 0.22 -1.95 16 22 C -0.13 -3.13 10.03 22.24 0.22 -2.90 16 23 C -0.10 -3.33 8.93 22.50 0.20 -3.13 16 24 H 0.29 13.72 8.31 -92.71 -0.77 12.95 16 25 H 0.15 8.36 6.37 -2.91 -0.02 8.34 16 26 H 0.14 6.02 7.04 -2.91 -0.02 6.00 16 27 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.12 3.78 7.79 -2.92 -0.02 3.75 16 32 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.12 4.22 5.72 -2.91 -0.02 4.20 16 Total: -1.00 -63.45 296.43 3.60 -59.84 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 1.10 Total: 32.79 kcal Atomic # 6 Polarization: -50.43 SS G_CDS: 4.56 Total: -45.87 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -4.09 Total: -86.91 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -63.45 3.60 -59.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821282745.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.358 kcal (2) G-P(sol) polarization free energy of solvation -63.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds