Wall clock time and date at job start Mon Mar 30 2020 07:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47539 * 240.00238 * 2 1 3 5 5 H 1.08002 * 119.99950 * 240.00453 * 4 2 1 6 6 C 1.37877 * 119.99590 * 59.99640 * 4 2 1 7 7 N 1.31504 * 120.00286 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99476 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47458 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47360 * 120.00503 * 8 6 4 11 11 H 1.48507 * 109.46790 * 239.99947 * 8 6 4 12 12 C 1.53006 * 109.46991 * 120.00237 * 2 1 3 13 13 H 1.08992 * 109.47331 * 60.00411 * 12 2 1 14 14 C 1.53000 * 109.47036 * 180.02562 * 12 2 1 15 15 C 1.50696 * 109.47139 * 185.46480 * 14 12 2 16 16 C 1.38246 * 119.97505 * 266.03156 * 15 14 12 17 17 C 1.38196 * 120.02919 * 180.27718 * 16 15 14 18 18 C 1.38455 * 119.96962 * 359.42404 * 17 16 15 19 19 F 1.35105 * 120.02404 * 180.29613 * 18 17 16 20 20 C 1.38462 * 119.95195 * 0.27707 * 18 17 16 21 21 C 1.38190 * 119.97282 * 0.02562 * 20 18 17 22 22 C 1.50696 * 109.47039 * 299.99864 * 12 2 1 23 23 O 1.20821 * 120.00433 * 300.77108 * 22 12 2 24 24 O 1.34228 * 119.99835 * 120.76434 * 22 12 2 25 25 H 1.09006 * 109.46748 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46988 * 299.99702 * 1 2 3 27 27 H 1.09000 * 109.47116 * 59.99793 * 1 2 3 28 28 H 0.97002 * 120.00177 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47564 * 65.45682 * 14 12 2 30 30 H 1.09007 * 109.47255 * 305.46370 * 14 12 2 31 31 H 1.08004 * 119.98491 * 359.97438 * 16 15 14 32 32 H 1.08003 * 120.01477 * 179.69520 * 17 16 15 33 33 H 1.07999 * 120.01280 * 180.02562 * 20 18 17 34 34 H 1.07998 * 119.98702 * 180.02562 * 21 20 18 35 35 H 0.96703 * 117.00390 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3215 -1.1202 -4.0079 9 1 3.1467 -2.2868 -3.6038 10 1 1.1663 -1.5865 -4.8162 11 1 3.1468 -0.1870 -4.8164 12 6 2.0400 -0.7213 1.2493 13 1 1.6767 -1.7489 1.2492 14 6 3.5700 -0.7208 1.2496 15 6 4.0723 -1.5452 2.4067 16 6 4.3802 -0.9341 3.6080 17 6 4.8465 -1.6882 4.6680 18 6 4.9938 -3.0580 4.5304 19 9 5.4438 -3.7971 5.5680 20 6 4.6793 -3.6699 3.3288 21 6 4.2192 -2.9128 2.2682 22 6 1.5377 -0.0110 2.4797 23 8 1.8180 1.1497 2.6640 24 8 0.7786 -0.6677 3.3709 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1619 -3.4843 29 1 3.9330 0.3023 1.3476 30 1 3.9337 -1.1473 0.3147 31 1 4.2610 0.1339 3.7164 32 1 5.0916 -1.2098 5.6048 33 1 4.7935 -4.7383 3.2206 34 1 3.9734 -3.3899 1.3310 35 1 0.4803 -0.1703 4.1447 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821972588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:11 Heat of formation + Delta-G solvation = -135.214733 kcal Electronic energy + Delta-G solvation = -20165.349019 eV Core-core repulsion = 16848.914500 eV Total energy + Delta-G solvation = -3316.434519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.84324 -40.07878 -38.82391 -35.95327 -35.14514 -32.79718 -31.05650 -30.87231 -27.81043 -25.49875 -24.33708 -22.97424 -22.09604 -20.77679 -19.07675 -17.78434 -17.58230 -16.61562 -16.15668 -15.57038 -15.50754 -15.36879 -15.18111 -14.47798 -13.95982 -13.52470 -13.32480 -13.12385 -12.90474 -12.57965 -12.05721 -12.00509 -11.60848 -11.17835 -11.11862 -11.01059 -10.90379 -10.87119 -10.59290 -10.19897 -10.00508 -9.91094 -9.50961 -9.04093 -8.93325 -8.43751 -8.36741 -6.08371 -4.16469 1.22498 1.30587 2.84479 3.24714 3.33441 3.35013 3.63748 3.71070 4.32037 4.36884 4.80149 4.90967 4.99448 5.24163 5.39210 5.40017 5.66824 5.76247 5.88851 5.97559 6.12845 6.17977 6.28827 6.32953 6.48551 6.62267 6.74781 6.83636 6.97073 6.99981 7.01856 7.14969 7.61133 7.82782 7.99529 8.25718 8.48755 8.85548 9.48858 10.97933 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.005734 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.820882 B = 4882.089024 C = 5766.103692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 H 0.041 0.959 4 C -0.515 4.515 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.060 4.060 13 H 0.088 0.912 14 C -0.068 4.068 15 C -0.086 4.086 16 C -0.092 4.092 17 C -0.152 4.152 18 C 0.082 3.918 19 F -0.147 7.147 20 C -0.152 4.152 21 C -0.083 4.083 22 C 0.487 3.513 23 O -0.525 6.525 24 O -0.521 6.521 25 H 0.030 0.970 26 H 0.003 0.997 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -5.967 10.979 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 H 0.059 0.941 4 C -0.553 4.553 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.080 4.080 13 H 0.106 0.894 14 C -0.105 4.105 15 C -0.086 4.086 16 C -0.110 4.110 17 C -0.171 4.171 18 C 0.063 3.937 19 F -0.125 7.125 20 C -0.171 4.171 21 C -0.101 4.101 22 C 0.331 3.669 23 O -0.414 6.414 24 O -0.332 6.332 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 5.046 -5.784 10.576 13.067 hybrid contribution 0.050 -0.199 -0.046 0.210 sum 5.095 -5.983 10.530 13.139 Atomic orbital electron populations 1.21884 0.98336 0.99333 1.00367 1.18741 0.92811 0.96308 0.88354 0.94098 1.21067 1.31769 1.12577 0.89876 0.91961 1.24946 0.94922 0.94900 0.99046 1.69896 1.36296 1.22698 1.23475 0.86526 0.78658 0.79667 0.83080 1.19656 1.21037 1.21010 1.21340 0.94760 1.01226 0.90639 0.89401 1.20696 0.93231 1.00110 0.96444 1.20357 0.97929 0.94442 0.95871 1.21051 0.97666 1.00292 0.92014 1.21071 1.03350 0.92138 1.00552 1.17695 1.01435 0.89484 0.85047 1.91467 1.87035 1.77033 1.57007 1.21118 1.02765 1.00851 0.92318 1.21029 0.97222 0.93187 0.98677 1.24170 0.73582 0.85681 0.83497 1.90626 1.56269 1.18303 1.76166 1.84660 1.64943 1.48584 1.35012 0.95060 0.97771 0.89318 0.92871 0.90130 0.87429 0.85167 0.85191 0.84980 0.84493 0.74845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.72 37.16 0.32 -3.02 16 2 C 0.06 1.33 1.81 -91.77 -0.17 1.16 16 3 H 0.04 1.09 8.07 -51.93 -0.42 0.67 16 4 C -0.51 -12.81 7.76 -34.44 -0.27 -13.07 16 5 H 0.06 1.47 6.73 -52.49 -0.35 1.11 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 8 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 C -0.06 -1.17 1.79 -91.77 -0.16 -1.33 16 13 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 14 C -0.07 -1.17 4.63 -27.88 -0.13 -1.30 16 15 C -0.09 -1.28 4.78 -104.62 -0.50 -1.78 16 16 C -0.09 -1.30 9.07 -39.59 -0.36 -1.66 16 17 C -0.15 -1.97 10.03 -39.52 -0.40 -2.37 16 18 C 0.08 1.10 7.30 -39.42 -0.29 0.81 16 19 F -0.15 -1.96 17.27 2.25 0.04 -1.92 16 20 C -0.15 -1.92 10.03 -39.52 -0.40 -2.32 16 21 C -0.08 -1.13 9.72 -39.60 -0.38 -1.51 16 22 C 0.49 9.14 4.80 36.00 0.17 9.31 16 23 O -0.53 -11.00 17.43 -18.75 -0.33 -11.32 16 24 O -0.52 -8.20 13.42 -39.25 -0.53 -8.73 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.00 0.07 7.22 -51.93 -0.37 -0.30 16 27 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.08 1.44 7.89 -51.93 -0.41 1.03 16 30 H 0.11 1.87 6.43 -51.92 -0.33 1.54 16 31 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.39 4.37 9.10 45.56 0.41 4.78 16 LS Contribution 304.35 15.07 4.59 4.59 Total: -1.00 -28.94 304.35 -6.73 -35.67 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.46 Total: 5.89 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -2.65 Total: -15.51 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.63 Total: -23.68 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.85 Total: -20.05 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.94 -6.73 -35.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821972588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.545 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds