Wall clock time and date at job start Mon Mar 30 2020 07:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47539 * 240.00238 * 2 1 3 5 5 H 1.08002 * 119.99950 * 240.00453 * 4 2 1 6 6 C 1.37877 * 119.99590 * 59.99640 * 4 2 1 7 7 N 1.31504 * 120.00286 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99476 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47458 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47360 * 120.00503 * 8 6 4 11 11 H 1.48507 * 109.46790 * 239.99947 * 8 6 4 12 12 C 1.53006 * 109.46991 * 120.00237 * 2 1 3 13 13 H 1.08992 * 109.47331 * 60.00411 * 12 2 1 14 14 C 1.53000 * 109.47036 * 180.02562 * 12 2 1 15 15 C 1.50696 * 109.47139 * 185.46480 * 14 12 2 16 16 C 1.38246 * 119.97505 * 266.03156 * 15 14 12 17 17 C 1.38196 * 120.02919 * 180.27718 * 16 15 14 18 18 C 1.38455 * 119.96962 * 359.42404 * 17 16 15 19 19 F 1.35105 * 120.02404 * 180.29613 * 18 17 16 20 20 C 1.38462 * 119.95195 * 0.27707 * 18 17 16 21 21 C 1.38190 * 119.97282 * 0.02562 * 20 18 17 22 22 C 1.50696 * 109.47039 * 299.99864 * 12 2 1 23 23 O 1.20821 * 120.00433 * 300.77108 * 22 12 2 24 24 O 1.34228 * 119.99835 * 120.76434 * 22 12 2 25 25 H 1.09006 * 109.46748 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46988 * 299.99702 * 1 2 3 27 27 H 1.09000 * 109.47116 * 59.99793 * 1 2 3 28 28 H 0.97002 * 120.00177 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47564 * 65.45682 * 14 12 2 30 30 H 1.09007 * 109.47255 * 305.46370 * 14 12 2 31 31 H 1.08004 * 119.98491 * 359.97438 * 16 15 14 32 32 H 1.08003 * 120.01477 * 179.69520 * 17 16 15 33 33 H 1.07999 * 120.01280 * 180.02562 * 20 18 17 34 34 H 1.07998 * 119.98702 * 180.02562 * 21 20 18 35 35 H 0.96703 * 117.00390 * 179.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3215 -1.1202 -4.0079 9 1 3.1467 -2.2868 -3.6038 10 1 1.1663 -1.5865 -4.8162 11 1 3.1468 -0.1870 -4.8164 12 6 2.0400 -0.7213 1.2493 13 1 1.6767 -1.7489 1.2492 14 6 3.5700 -0.7208 1.2496 15 6 4.0723 -1.5452 2.4067 16 6 4.3802 -0.9341 3.6080 17 6 4.8465 -1.6882 4.6680 18 6 4.9938 -3.0580 4.5304 19 9 5.4438 -3.7971 5.5680 20 6 4.6793 -3.6699 3.3288 21 6 4.2192 -2.9128 2.2682 22 6 1.5377 -0.0110 2.4797 23 8 1.8180 1.1497 2.6640 24 8 0.7786 -0.6677 3.3709 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1619 -3.4843 29 1 3.9330 0.3023 1.3476 30 1 3.9337 -1.1473 0.3147 31 1 4.2610 0.1339 3.7164 32 1 5.0916 -1.2098 5.6048 33 1 4.7935 -4.7383 3.2206 34 1 3.9734 -3.3899 1.3310 35 1 0.4803 -0.1703 4.1447 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821972588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:11 Heat of formation + Delta-G solvation = -150.551799 kcal Electronic energy + Delta-G solvation = -20166.014084 eV Core-core repulsion = 16848.914500 eV Total energy + Delta-G solvation = -3317.099584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.86975 -41.52101 -39.95895 -37.46380 -36.73766 -34.43750 -32.47928 -32.07416 -29.29261 -27.39873 -25.77525 -24.01255 -23.61843 -22.09972 -20.68754 -19.30244 -18.60855 -18.29978 -17.45336 -16.97651 -16.86236 -16.55007 -16.47994 -16.18138 -15.06671 -14.78810 -14.65178 -14.50818 -14.38239 -14.02433 -13.55313 -13.47959 -13.06230 -12.84825 -12.73756 -12.52869 -12.46100 -12.32059 -12.07680 -11.88989 -11.73884 -11.49997 -11.21781 -10.80335 -10.43184 -10.05085 -9.49214 -8.05706 -6.19268 0.15087 0.28887 1.34286 1.47614 1.50829 1.60548 2.27684 2.51843 2.61658 3.24387 3.29530 3.73450 3.80334 3.98405 4.21776 4.25076 4.35620 4.41386 4.48743 4.74933 4.81160 4.95070 4.97494 5.07816 5.12749 5.16268 5.22681 5.25596 5.31585 5.62027 5.65082 5.67357 5.88417 5.95252 6.04894 6.31008 6.90313 7.12843 7.49484 9.00817 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.005734 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.820882 B = 4882.089024 C = 5766.103692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.256 1.256 10 H -0.286 1.286 11 H -0.288 1.288 12 C -0.057 4.057 13 H 0.098 0.902 14 C -0.059 4.059 15 C -0.098 4.098 16 C -0.099 4.099 17 C -0.150 4.150 18 C 0.077 3.923 19 F -0.147 7.147 20 C -0.146 4.146 21 C -0.085 4.085 22 C 0.494 3.506 23 O -0.552 6.552 24 O -0.512 6.512 25 H 0.040 0.960 26 H 0.011 0.989 27 H 0.060 0.940 28 H 0.259 0.741 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 -8.065 11.882 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.037 3.963 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.179 1.179 10 H -0.213 1.213 11 H -0.214 1.214 12 C -0.076 4.076 13 H 0.116 0.884 14 C -0.096 4.096 15 C -0.098 4.098 16 C -0.117 4.117 17 C -0.168 4.168 18 C 0.058 3.942 19 F -0.125 7.125 20 C -0.165 4.165 21 C -0.103 4.103 22 C 0.339 3.661 23 O -0.443 6.443 24 O -0.325 6.325 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 5.752 -7.904 11.512 15.102 hybrid contribution -0.193 0.453 -0.223 0.540 sum 5.559 -7.451 11.290 14.624 Atomic orbital electron populations 1.21749 0.98525 0.99504 0.99317 1.18595 0.92677 0.94542 0.90454 0.98168 1.21445 1.31123 1.12636 0.90269 0.90537 1.25751 0.95277 0.95584 1.02111 1.70049 1.37886 1.24377 1.23858 0.85539 0.78006 0.78884 0.79434 1.17922 1.21258 1.21448 1.21148 0.96262 1.00896 0.89287 0.88379 1.20505 0.91755 0.99805 0.97519 1.20171 0.99421 0.94955 0.95287 1.21034 0.98175 1.00257 0.92211 1.21234 1.02522 0.92158 1.00923 1.17858 1.01364 0.89664 0.85319 1.91472 1.87020 1.76999 1.57039 1.21357 1.01523 1.02052 0.91558 1.21164 0.96999 0.92527 0.99567 1.23907 0.73445 0.85058 0.83707 1.90624 1.57390 1.19421 1.76853 1.84579 1.63904 1.48403 1.35581 0.94077 0.97038 0.92140 0.93158 0.91662 0.87862 0.85645 0.83270 0.82555 0.83243 0.72168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.72 71.98 0.63 -5.72 16 2 C 0.06 2.67 1.81 -11.54 -0.02 2.65 16 3 H 0.00 0.01 8.07 -2.39 -0.02 -0.01 16 4 C -0.52 -25.62 7.76 25.60 0.20 -25.42 16 5 H 0.08 3.50 6.73 -2.91 -0.02 3.48 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -51.82 11.32 21.45 0.24 -51.58 16 8 Si 0.96 40.93 29.54 68.60 2.03 42.96 16 9 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 12 C -0.06 -2.16 1.79 -11.54 -0.02 -2.18 16 13 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 14 C -0.06 -2.00 4.63 29.85 0.14 -1.86 16 15 C -0.10 -2.79 4.78 -19.86 -0.09 -2.89 16 16 C -0.10 -2.65 9.07 22.26 0.20 -2.45 16 17 C -0.15 -3.54 10.03 22.31 0.22 -3.31 16 18 C 0.08 1.84 7.30 22.38 0.16 2.00 16 19 F -0.15 -3.52 17.27 44.97 0.78 -2.74 16 20 C -0.15 -3.25 10.03 22.31 0.22 -3.03 16 21 C -0.08 -2.08 9.72 22.26 0.22 -1.86 16 22 C 0.49 18.14 4.80 71.23 0.34 18.48 16 23 O -0.55 -23.14 17.43 21.98 0.38 -22.75 16 24 O -0.51 -14.99 13.42 -51.39 -0.69 -15.68 16 25 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.01 0.48 7.22 -2.39 -0.02 0.47 16 27 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 28 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.06 2.38 7.89 -2.39 -0.02 2.36 16 30 H 0.10 3.54 6.43 -2.38 -0.02 3.52 16 31 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.42 8.19 9.10 -74.06 -0.67 7.52 16 Total: -1.00 -61.79 304.35 5.83 -55.96 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.44 Total: 18.39 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 2.65 Total: -24.56 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.24 Total: -51.58 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.31 Total: -38.43 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -61.79 5.83 -55.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821972588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.587 kcal (2) G-P(sol) polarization free energy of solvation -61.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds