Wall clock time and date at job start Mon Mar 30 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.53004 * 109.46471 * 119.99643 * 2 1 3 13 13 H 1.09000 * 109.47211 * 60.00479 * 12 2 1 14 14 C 1.52997 * 109.47000 * 299.99609 * 12 2 1 15 15 C 1.50707 * 109.46655 * 175.00530 * 14 12 2 16 16 C 1.38226 * 120.01099 * 264.72553 * 15 14 12 17 17 C 1.38216 * 120.02364 * 179.72279 * 16 15 14 18 18 C 1.38268 * 120.05020 * 0.55672 * 17 16 15 19 19 C 1.38170 * 120.03009 * 359.72069 * 18 17 16 20 20 C 1.38434 * 120.01682 * 85.00261 * 15 14 12 21 21 F 1.35106 * 120.02336 * 359.97438 * 20 15 14 22 22 C 1.50701 * 109.46857 * 179.97438 * 12 2 1 23 23 O 1.20836 * 119.99926 * 0.02562 * 22 12 2 24 24 O 1.34230 * 120.00212 * 180.02562 * 22 12 2 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47594 * 294.99879 * 14 12 2 30 30 H 1.09001 * 109.47126 * 55.00700 * 14 12 2 31 31 H 1.08007 * 119.98405 * 0.02562 * 16 15 14 32 32 H 1.08001 * 119.97601 * 180.29460 * 17 16 15 33 33 H 1.08011 * 119.98226 * 179.74677 * 18 17 16 34 34 H 1.07997 * 120.01421 * 179.97438 * 19 18 17 35 35 H 0.96698 * 116.99659 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0399 -0.7212 1.2494 13 1 1.6766 -1.7489 1.2494 14 6 1.5299 0.0002 2.4985 15 6 1.9286 -0.7781 3.7259 16 6 1.0438 -1.6762 4.2927 17 6 1.4113 -2.3943 5.4150 18 6 2.6598 -2.2068 5.9789 19 6 3.5437 -1.3054 5.4175 20 6 3.1788 -0.5896 4.2896 21 9 4.0425 0.2917 3.7395 22 6 3.5469 -0.7218 1.2491 23 8 4.1511 -0.1986 0.3429 24 8 4.2180 -1.3035 2.2556 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7173 1.1669 -3.4844 29 1 1.9646 0.9987 2.5444 30 1 0.4436 0.0784 2.4548 31 1 0.0668 -1.8204 3.8554 32 1 0.7212 -3.0994 5.8544 33 1 2.9443 -2.7656 6.8584 34 1 4.5187 -1.1588 5.8584 35 1 5.1837 -1.2782 2.2117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821973171.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:33 Heat of formation + Delta-G solvation = -118.560947 kcal Electronic energy + Delta-G solvation = -20848.357909 eV Core-core repulsion = 17532.645552 eV Total energy + Delta-G solvation = -3315.712357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.57651 -39.73071 -38.67791 -35.88204 -34.95977 -32.92520 -30.89385 -30.30286 -27.82324 -25.62653 -24.29108 -22.65446 -21.79169 -21.00972 -18.82238 -17.42988 -17.11568 -16.59638 -16.28434 -15.75267 -15.49250 -15.39935 -14.54162 -14.18490 -14.02167 -13.38173 -13.24909 -12.86954 -12.71231 -12.42852 -12.12271 -11.80229 -11.50088 -11.19500 -10.98043 -10.83884 -10.70003 -10.56714 -10.50634 -10.21455 -10.01555 -9.54470 -9.35412 -8.87751 -8.70026 -8.32010 -8.23147 -5.89945 -3.92168 1.34872 1.38691 3.19237 3.38990 3.42580 3.47469 3.74653 3.88517 4.52703 4.54811 4.84879 4.91740 5.04631 5.32054 5.42834 5.46944 5.66850 5.69125 5.79832 6.04656 6.20450 6.23940 6.32426 6.41655 6.49258 6.59651 6.63044 6.86487 7.04438 7.07993 7.19571 7.29847 7.75489 7.95308 8.14132 8.44814 8.81927 9.03595 9.69363 11.17151 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.005919 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.970547 B = 4729.244976 C = 5093.876609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.058 3.942 3 H 0.036 0.964 4 C -0.491 4.491 5 H 0.049 0.951 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.890 3.110 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C -0.058 4.058 13 H 0.094 0.906 14 C -0.078 4.078 15 C -0.112 4.112 16 C -0.087 4.087 17 C -0.140 4.140 18 C -0.100 4.100 19 C -0.164 4.164 20 C 0.144 3.856 21 F -0.137 7.137 22 C 0.474 3.526 23 O -0.481 6.481 24 O -0.528 6.528 25 H 0.013 0.987 26 H 0.088 0.912 27 H 0.028 0.972 28 H 0.259 0.741 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 -4.916 16.650 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.039 3.961 3 H 0.054 0.946 4 C -0.529 4.529 5 H 0.067 0.933 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.078 4.078 13 H 0.112 0.888 14 C -0.115 4.115 15 C -0.113 4.113 16 C -0.105 4.105 17 C -0.159 4.159 18 C -0.118 4.118 19 C -0.183 4.183 20 C 0.125 3.875 21 F -0.116 7.116 22 C 0.314 3.686 23 O -0.365 6.365 24 O -0.341 6.341 25 H 0.032 0.968 26 H 0.106 0.894 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.673 -4.610 16.216 16.872 hybrid contribution 1.296 -0.400 -1.052 1.716 sum 1.969 -5.010 15.163 16.090 Atomic orbital electron populations 1.21888 0.97792 0.99302 1.00645 1.18649 0.92572 0.96123 0.88727 0.94629 1.20903 1.29928 1.11763 0.90300 0.93267 1.24836 0.95230 0.95059 0.98759 1.69849 1.37395 1.23022 1.23233 0.86690 0.79381 0.79561 0.82546 1.20479 1.21365 1.20389 1.21389 0.86020 1.02627 0.97730 0.88836 1.20723 1.02913 0.98186 0.89711 1.20075 0.93410 0.99739 0.98110 1.20953 0.99311 0.94831 0.95375 1.21080 0.96897 1.00761 0.97122 1.20875 0.93690 0.97585 0.99664 1.21003 1.01145 0.99214 0.96936 1.17330 0.87488 0.90208 0.92505 1.91456 1.68879 1.66353 1.84888 1.23704 0.91993 0.74630 0.78227 1.90735 1.69939 1.40928 1.34899 1.84694 1.25289 1.74886 1.49187 0.96806 0.89381 0.95288 0.93123 0.90705 0.88664 0.85203 0.85910 0.85808 0.85480 0.75227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.63 37.16 0.32 -2.83 16 2 C 0.06 1.42 1.54 -91.77 -0.14 1.28 16 3 H 0.04 0.99 8.10 -51.93 -0.42 0.57 16 4 C -0.49 -13.74 6.98 -34.44 -0.24 -13.98 16 5 H 0.05 1.40 7.29 -52.49 -0.38 1.02 16 6 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 7 N -0.90 -26.05 11.33 55.43 0.63 -25.43 16 8 Si 0.89 22.29 29.54 -169.99 -5.02 17.26 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 12 C -0.06 -1.19 1.87 -91.77 -0.17 -1.36 16 13 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 14 C -0.08 -1.31 4.47 -27.88 -0.12 -1.43 16 15 C -0.11 -1.67 4.73 -104.55 -0.49 -2.16 16 16 C -0.09 -1.08 9.68 -39.59 -0.38 -1.47 16 17 C -0.14 -1.51 10.04 -39.58 -0.40 -1.91 16 18 C -0.10 -1.05 10.04 -39.60 -0.40 -1.45 16 19 C -0.16 -1.98 10.03 -39.52 -0.40 -2.37 16 20 C 0.14 2.11 5.01 -39.42 -0.20 1.91 16 21 F -0.14 -2.22 13.70 2.25 0.03 -2.19 16 22 C 0.47 9.94 6.43 36.01 0.23 10.17 16 23 O -0.48 -12.14 15.44 -18.76 -0.29 -12.43 16 24 O -0.53 -8.85 8.01 -39.26 -0.31 -9.16 16 25 H 0.01 0.26 6.32 -51.93 -0.33 -0.07 16 26 H 0.09 2.27 6.08 -51.93 -0.32 1.95 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.07 1.31 7.79 -51.93 -0.40 0.91 16 30 H 0.10 1.46 6.08 -51.93 -0.32 1.14 16 31 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.39 5.21 9.10 45.56 0.41 5.62 16 LS Contribution 291.69 15.07 4.40 4.40 Total: -1.00 -32.17 291.69 -6.48 -38.65 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.42 Total: 2.84 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.49 Total: -13.94 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.63 Total: -25.43 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.60 Total: -21.59 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.03 Total: -2.19 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.17 -6.48 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973171.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.913 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds