Wall clock time and date at job start Mon Mar 30 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.53004 * 109.46471 * 119.99643 * 2 1 3 13 13 H 1.09000 * 109.47211 * 60.00479 * 12 2 1 14 14 C 1.52997 * 109.47000 * 299.99609 * 12 2 1 15 15 C 1.50707 * 109.46655 * 175.00530 * 14 12 2 16 16 C 1.38226 * 120.01099 * 264.72553 * 15 14 12 17 17 C 1.38216 * 120.02364 * 179.72279 * 16 15 14 18 18 C 1.38268 * 120.05020 * 0.55672 * 17 16 15 19 19 C 1.38170 * 120.03009 * 359.72069 * 18 17 16 20 20 C 1.38434 * 120.01682 * 85.00261 * 15 14 12 21 21 F 1.35106 * 120.02336 * 359.97438 * 20 15 14 22 22 C 1.50701 * 109.46857 * 179.97438 * 12 2 1 23 23 O 1.20836 * 119.99926 * 0.02562 * 22 12 2 24 24 O 1.34230 * 120.00212 * 180.02562 * 22 12 2 25 25 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47594 * 294.99879 * 14 12 2 30 30 H 1.09001 * 109.47126 * 55.00700 * 14 12 2 31 31 H 1.08007 * 119.98405 * 0.02562 * 16 15 14 32 32 H 1.08001 * 119.97601 * 180.29460 * 17 16 15 33 33 H 1.08011 * 119.98226 * 179.74677 * 18 17 16 34 34 H 1.07997 * 120.01421 * 179.97438 * 19 18 17 35 35 H 0.96698 * 116.99659 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0399 -0.7212 1.2494 13 1 1.6766 -1.7489 1.2494 14 6 1.5299 0.0002 2.4985 15 6 1.9286 -0.7781 3.7259 16 6 1.0438 -1.6762 4.2927 17 6 1.4113 -2.3943 5.4150 18 6 2.6598 -2.2068 5.9789 19 6 3.5437 -1.3054 5.4175 20 6 3.1788 -0.5896 4.2896 21 9 4.0425 0.2917 3.7395 22 6 3.5469 -0.7218 1.2491 23 8 4.1511 -0.1986 0.3429 24 8 4.2180 -1.3035 2.2556 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7173 1.1669 -3.4844 29 1 1.9646 0.9987 2.5444 30 1 0.4436 0.0784 2.4548 31 1 0.0668 -1.8204 3.8554 32 1 0.7212 -3.0994 5.8544 33 1 2.9443 -2.7656 6.8584 34 1 4.5187 -1.1588 5.8584 35 1 5.1837 -1.2782 2.2117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821973171.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:33 Heat of formation + Delta-G solvation = -137.858842 kcal Electronic energy + Delta-G solvation = -20849.194729 eV Core-core repulsion = 17532.645552 eV Total energy + Delta-G solvation = -3316.549176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.71141 -41.30979 -39.73401 -37.51979 -36.61588 -34.66398 -32.44326 -31.26667 -29.35135 -27.48869 -25.89883 -23.68102 -23.28074 -22.30123 -20.53377 -18.82031 -18.58385 -18.23187 -17.74998 -16.96570 -16.89687 -16.69854 -16.38684 -15.66517 -15.09485 -14.81375 -14.75924 -14.24827 -14.05570 -13.88465 -13.57787 -13.18803 -12.85934 -12.77802 -12.65645 -12.53077 -12.33460 -12.20794 -12.10924 -12.00807 -11.75218 -11.29171 -11.14245 -10.80197 -10.40507 -9.71820 -9.33837 -8.05624 -6.13859 0.40503 0.45624 1.37006 1.40394 1.46803 1.52349 2.36359 2.44681 2.82729 3.23500 3.57544 3.73210 3.92435 4.17658 4.19397 4.28616 4.37879 4.54048 4.59491 4.76956 4.87344 5.00283 5.07631 5.15532 5.21953 5.30759 5.32077 5.41910 5.59020 5.62856 5.64512 5.76418 5.92977 6.13867 6.17755 6.36077 6.88688 7.24592 7.49875 8.99653 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.005919 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.970547 B = 4729.244976 C = 5093.876609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.057 3.943 3 H -0.008 1.008 4 C -0.502 4.502 5 H 0.037 0.963 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.944 3.056 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.287 1.287 12 C -0.054 4.054 13 H 0.104 0.896 14 C -0.067 4.067 15 C -0.134 4.134 16 C -0.091 4.091 17 C -0.135 4.135 18 C -0.092 4.092 19 C -0.166 4.166 20 C 0.115 3.885 21 F -0.156 7.156 22 C 0.481 3.519 23 O -0.535 6.535 24 O -0.506 6.506 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.259 0.741 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 -7.051 18.904 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.038 3.962 3 H 0.010 0.990 4 C -0.541 4.541 5 H 0.056 0.944 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.770 3.230 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.213 1.213 12 C -0.073 4.073 13 H 0.122 0.878 14 C -0.104 4.104 15 C -0.135 4.135 16 C -0.109 4.109 17 C -0.152 4.152 18 C -0.109 4.109 19 C -0.185 4.185 20 C 0.096 3.904 21 F -0.135 7.135 22 C 0.324 3.676 23 O -0.423 6.423 24 O -0.319 6.319 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.137 -6.770 18.506 19.706 hybrid contribution 1.506 0.218 -1.598 2.207 sum 1.643 -6.552 16.907 18.207 Atomic orbital electron populations 1.21702 0.96196 0.99950 1.00691 1.18525 0.93863 0.93822 0.89960 0.98955 1.21209 1.29417 1.11527 0.91919 0.94422 1.25560 0.95707 0.95913 1.01476 1.69979 1.38291 1.24032 1.23642 0.85834 0.78123 0.79322 0.79683 1.19028 1.20544 1.21317 1.21216 0.85787 1.02856 0.97473 0.87808 1.20544 1.03377 0.97185 0.89273 1.19961 0.94393 1.01166 0.98006 1.21210 0.99548 0.94206 0.95933 1.21496 0.97471 1.00245 0.96024 1.21341 0.93058 0.96466 1.00081 1.21285 1.02349 0.98880 0.95987 1.17696 0.87587 0.91155 0.93971 1.91409 1.69449 1.67199 1.85403 1.23824 0.92450 0.73515 0.77772 1.90716 1.70981 1.43509 1.37141 1.84650 1.26698 1.73469 1.47103 0.93493 0.92579 0.94158 0.93205 0.92513 0.87230 0.83709 0.82698 0.82353 0.83833 0.73294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.63 71.98 0.62 -5.20 16 2 C 0.06 2.88 1.54 -11.54 -0.02 2.86 16 3 H -0.01 -0.45 8.10 -2.39 -0.02 -0.47 16 4 C -0.50 -28.82 6.98 25.60 0.18 -28.64 16 5 H 0.04 2.19 7.29 -2.91 -0.02 2.17 16 6 C 0.01 0.64 5.31 84.65 0.45 1.09 16 7 N -0.92 -54.87 11.33 21.45 0.24 -54.63 16 8 Si 0.94 46.34 29.54 68.60 2.03 48.37 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 12 C -0.05 -2.21 1.87 -11.54 -0.02 -2.23 16 13 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 14 C -0.07 -2.20 4.47 29.85 0.13 -2.07 16 15 C -0.13 -3.76 4.73 -19.82 -0.09 -3.86 16 16 C -0.09 -1.99 9.68 22.26 0.22 -1.77 16 17 C -0.13 -2.28 10.04 22.27 0.22 -2.06 16 18 C -0.09 -1.51 10.04 22.26 0.22 -1.29 16 19 C -0.17 -3.52 10.03 22.31 0.22 -3.30 16 20 C 0.12 3.21 5.01 22.37 0.11 3.32 16 21 F -0.16 -5.04 13.70 44.97 0.62 -4.42 16 22 C 0.48 20.53 6.43 71.24 0.46 20.99 16 23 O -0.54 -28.04 15.44 21.93 0.34 -27.70 16 24 O -0.51 -16.68 8.01 -51.42 -0.41 -17.09 16 25 H 0.05 1.77 6.32 -2.39 -0.02 1.76 16 26 H 0.06 2.93 6.08 -2.38 -0.01 2.92 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 28 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.06 2.04 7.79 -2.39 -0.02 2.03 16 30 H 0.11 3.21 6.08 -2.39 -0.01 3.19 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.16 1.53 8.06 -2.90 -0.02 1.51 16 34 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.41 10.59 9.10 -74.06 -0.67 9.91 16 Total: -1.00 -72.13 291.69 5.96 -66.17 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.44 Total: 11.47 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 2.71 Total: -22.16 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.24 Total: -54.63 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.07 Total: -44.80 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.62 Total: -4.42 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.13 5.96 -66.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973171.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.691 kcal (2) G-P(sol) polarization free energy of solvation -72.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds