Wall clock time and date at job start Mon Mar 30 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47219 * 2 1 4 4 C 1.50704 * 109.46895 * 239.99893 * 2 1 3 5 5 H 1.08001 * 119.99384 * 240.00018 * 4 2 1 6 6 C 1.37875 * 120.00160 * 59.99730 * 4 2 1 7 7 N 1.31513 * 120.00158 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46975 * 90.00631 * 8 6 4 10 10 H 1.48500 * 109.47119 * 210.00458 * 8 6 4 11 11 H 1.48503 * 109.47404 * 330.00709 * 8 6 4 12 12 C 1.52996 * 109.46954 * 120.00007 * 2 1 3 13 13 H 1.09003 * 109.47456 * 59.99736 * 12 2 1 14 14 C 1.53002 * 109.46954 * 180.02562 * 12 2 1 15 15 C 1.50700 * 109.46882 * 185.44189 * 14 12 2 16 16 C 1.38215 * 120.01207 * 264.04022 * 15 14 12 17 17 C 1.38229 * 120.02389 * 179.97438 * 16 15 14 18 18 C 1.38262 * 120.05388 * 359.97438 * 17 16 15 19 19 C 1.38184 * 120.02448 * 0.02562 * 18 17 16 20 20 C 1.38442 * 120.01418 * 84.27717 * 15 14 12 21 21 F 1.35101 * 120.02283 * 0.03885 * 20 15 14 22 22 C 1.50704 * 109.47227 * 299.99682 * 12 2 1 23 23 O 1.20822 * 119.99809 * 300.37182 * 22 12 2 24 24 O 1.34227 * 119.99869 * 120.36355 * 22 12 2 25 25 H 1.09002 * 109.46950 * 60.00389 * 1 2 3 26 26 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47095 * 300.00426 * 1 2 3 28 28 H 0.96995 * 120.00600 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.47044 * 65.44348 * 14 12 2 30 30 H 1.08999 * 109.47256 * 305.44106 * 14 12 2 31 31 H 1.07994 * 119.99005 * 359.95661 * 16 15 14 32 32 H 1.08005 * 119.97446 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.98970 * 180.02562 * 18 17 16 34 34 H 1.07994 * 120.01395 * 180.02562 * 19 18 17 35 35 H 0.96699 * 116.99720 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4828 7 7 0.9435 0.8301 -2.6035 8 14 2.3224 -1.1197 -4.0079 9 1 1.3446 -2.1617 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7569 -3.7119 12 6 2.0400 -0.7212 1.2492 13 1 1.6766 -1.7489 1.2493 14 6 3.5700 -0.7207 1.2495 15 6 4.0723 -1.5446 2.4071 16 6 4.4194 -0.9288 3.5948 17 6 4.8797 -1.6843 4.6569 18 6 4.9930 -3.0567 4.5327 19 6 4.6465 -3.6745 3.3462 20 6 4.1909 -2.9180 2.2796 21 9 3.8572 -3.5203 1.1173 22 6 1.5377 -0.0108 2.4797 23 8 1.8241 1.1479 2.6675 24 8 0.7720 -0.6652 3.3669 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7088 1.1612 -3.4844 29 1 3.9329 0.3024 1.3473 30 1 3.9337 -1.1475 0.3149 31 1 4.3313 0.1431 3.6930 32 1 5.1503 -1.2023 5.5848 33 1 5.3523 -3.6461 5.3634 34 1 4.7347 -4.7465 3.2496 35 1 0.4734 -0.1676 4.1404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821973172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:36 Heat of formation + Delta-G solvation = -132.675919 kcal Electronic energy + Delta-G solvation = -20591.356738 eV Core-core repulsion = 17275.032310 eV Total energy + Delta-G solvation = -3316.324428 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.58275 -39.99922 -38.76360 -35.97382 -35.14444 -32.95608 -31.08694 -30.37455 -28.00472 -25.46714 -24.46348 -22.62574 -22.13345 -20.78001 -19.05620 -17.77655 -17.33992 -16.59465 -16.08017 -15.65322 -15.41810 -15.39266 -14.98962 -14.47154 -14.05997 -13.29844 -13.07777 -13.04526 -12.78012 -12.43907 -12.18048 -11.99227 -11.53535 -11.34679 -11.01429 -10.99999 -10.92325 -10.76699 -10.57220 -10.14221 -9.99101 -9.88797 -9.47630 -8.91898 -8.80327 -8.42959 -8.37961 -6.02793 -4.10175 1.27600 1.29497 2.86180 3.30618 3.37402 3.40514 3.65639 3.72494 4.42841 4.45244 4.81827 4.90450 5.01394 5.28551 5.30247 5.43680 5.68950 5.78852 5.86518 6.01033 6.14334 6.17557 6.33670 6.44541 6.49778 6.63107 6.69782 6.83918 6.98924 7.03822 7.04827 7.18903 7.67053 7.86985 8.04810 8.31589 8.50913 8.92200 9.54916 11.03581 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.007073 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.429383 B = 3957.582974 C = 4902.393348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.514 4.514 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C -0.060 4.060 13 H 0.086 0.914 14 C -0.067 4.067 15 C -0.112 4.112 16 C -0.092 4.092 17 C -0.132 4.132 18 C -0.102 4.102 19 C -0.157 4.157 20 C 0.106 3.894 21 F -0.131 7.131 22 C 0.488 3.512 23 O -0.525 6.525 24 O -0.521 6.521 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.003 0.997 28 H 0.261 0.739 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.649 -6.112 13.111 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.039 3.961 3 H 0.059 0.941 4 C -0.552 4.552 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.079 4.079 13 H 0.105 0.895 14 C -0.104 4.104 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.150 4.150 18 C -0.120 4.120 19 C -0.175 4.175 20 C 0.087 3.913 21 F -0.109 7.109 22 C 0.332 3.668 23 O -0.413 6.413 24 O -0.332 6.332 25 H 0.107 0.893 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.773 -5.920 12.614 15.083 hybrid contribution -0.084 -0.228 -0.458 0.518 sum 5.688 -6.148 12.156 14.762 Atomic orbital electron populations 1.21886 0.98313 0.99351 1.00355 1.18724 0.92817 0.96202 0.88307 0.94107 1.21073 1.31699 1.12556 0.89867 0.91890 1.24935 0.94961 0.94886 0.99006 1.69889 1.36455 1.22719 1.23516 0.86576 0.79390 0.79364 0.82616 1.20648 1.21255 1.19728 1.21313 0.94600 1.01239 0.90746 0.89541 1.20632 0.93469 1.00005 0.96303 1.20356 1.00683 0.92661 0.97635 1.21071 0.97646 1.00440 0.91878 1.21141 1.00933 0.94017 0.98926 1.20914 0.99581 0.94729 0.96823 1.21116 1.02882 1.00415 0.93121 1.17616 1.00406 0.90671 0.82623 1.91539 1.89881 1.83375 1.46099 1.24161 0.73595 0.85629 0.83451 1.90620 1.56343 1.18352 1.76017 1.84667 1.64631 1.48668 1.35194 0.89254 0.95059 0.97786 0.92876 0.89819 0.87381 0.85222 0.85752 0.85491 0.85033 0.74882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.72 37.16 0.32 -3.15 16 2 C 0.06 1.44 1.81 -91.77 -0.17 1.27 16 3 H 0.04 1.12 8.08 -51.93 -0.42 0.70 16 4 C -0.51 -13.56 7.76 -34.44 -0.27 -13.82 16 5 H 0.06 1.62 6.73 -52.49 -0.35 1.27 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 12 C -0.06 -1.24 1.79 -91.77 -0.16 -1.41 16 13 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 14 C -0.07 -1.27 4.39 -27.88 -0.12 -1.40 16 15 C -0.11 -1.84 4.75 -104.56 -0.50 -2.34 16 16 C -0.09 -1.31 9.17 -39.59 -0.36 -1.68 16 17 C -0.13 -1.54 10.04 -39.58 -0.40 -1.94 16 18 C -0.10 -1.13 10.04 -39.59 -0.40 -1.53 16 19 C -0.16 -2.00 10.03 -39.51 -0.40 -2.40 16 20 C 0.11 1.69 7.24 -39.42 -0.29 1.40 16 21 F -0.13 -2.31 16.58 2.25 0.04 -2.27 16 22 C 0.49 9.55 4.89 36.01 0.18 9.73 16 23 O -0.52 -11.26 17.43 -18.75 -0.33 -11.59 16 24 O -0.52 -8.51 13.42 -39.25 -0.53 -9.03 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.00 0.07 7.22 -51.93 -0.37 -0.30 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.08 1.59 7.87 -51.93 -0.41 1.18 16 30 H 0.11 2.17 6.13 -51.93 -0.32 1.86 16 31 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.39 4.48 9.10 45.56 0.41 4.90 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -30.33 303.57 -6.73 -37.07 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.45 Total: 5.36 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.65 Total: -15.61 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.63 Total: -24.46 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.85 Total: -20.62 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.33 -6.73 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.611 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds