Wall clock time and date at job start Mon Mar 30 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47219 * 2 1 4 4 C 1.50704 * 109.46895 * 239.99893 * 2 1 3 5 5 H 1.08001 * 119.99384 * 240.00018 * 4 2 1 6 6 C 1.37875 * 120.00160 * 59.99730 * 4 2 1 7 7 N 1.31513 * 120.00158 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46975 * 90.00631 * 8 6 4 10 10 H 1.48500 * 109.47119 * 210.00458 * 8 6 4 11 11 H 1.48503 * 109.47404 * 330.00709 * 8 6 4 12 12 C 1.52996 * 109.46954 * 120.00007 * 2 1 3 13 13 H 1.09003 * 109.47456 * 59.99736 * 12 2 1 14 14 C 1.53002 * 109.46954 * 180.02562 * 12 2 1 15 15 C 1.50700 * 109.46882 * 185.44189 * 14 12 2 16 16 C 1.38215 * 120.01207 * 264.04022 * 15 14 12 17 17 C 1.38229 * 120.02389 * 179.97438 * 16 15 14 18 18 C 1.38262 * 120.05388 * 359.97438 * 17 16 15 19 19 C 1.38184 * 120.02448 * 0.02562 * 18 17 16 20 20 C 1.38442 * 120.01418 * 84.27717 * 15 14 12 21 21 F 1.35101 * 120.02283 * 0.03885 * 20 15 14 22 22 C 1.50704 * 109.47227 * 299.99682 * 12 2 1 23 23 O 1.20822 * 119.99809 * 300.37182 * 22 12 2 24 24 O 1.34227 * 119.99869 * 120.36355 * 22 12 2 25 25 H 1.09002 * 109.46950 * 60.00389 * 1 2 3 26 26 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47095 * 300.00426 * 1 2 3 28 28 H 0.96995 * 120.00600 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.47044 * 65.44348 * 14 12 2 30 30 H 1.08999 * 109.47256 * 305.44106 * 14 12 2 31 31 H 1.07994 * 119.99005 * 359.95661 * 16 15 14 32 32 H 1.08005 * 119.97446 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.98970 * 180.02562 * 18 17 16 34 34 H 1.07994 * 120.01395 * 180.02562 * 19 18 17 35 35 H 0.96699 * 116.99720 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4828 7 7 0.9435 0.8301 -2.6035 8 14 2.3224 -1.1197 -4.0079 9 1 1.3446 -2.1617 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7569 -3.7119 12 6 2.0400 -0.7212 1.2492 13 1 1.6766 -1.7489 1.2493 14 6 3.5700 -0.7207 1.2495 15 6 4.0723 -1.5446 2.4071 16 6 4.4194 -0.9288 3.5948 17 6 4.8797 -1.6843 4.6569 18 6 4.9930 -3.0567 4.5327 19 6 4.6465 -3.6745 3.3462 20 6 4.1909 -2.9180 2.2796 21 9 3.8572 -3.5203 1.1173 22 6 1.5377 -0.0108 2.4797 23 8 1.8241 1.1479 2.6675 24 8 0.7720 -0.6652 3.3669 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7088 1.1612 -3.4844 29 1 3.9329 0.3024 1.3473 30 1 3.9337 -1.1475 0.3149 31 1 4.3313 0.1431 3.6930 32 1 5.1503 -1.2023 5.5848 33 1 5.3523 -3.6461 5.3634 34 1 4.7347 -4.7465 3.2496 35 1 0.4734 -0.1676 4.1404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821973172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:35 Heat of formation + Delta-G solvation = -149.914430 kcal Electronic energy + Delta-G solvation = -20592.104256 eV Core-core repulsion = 17275.032310 eV Total energy + Delta-G solvation = -3317.071946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.82171 -41.53202 -39.87089 -37.56824 -36.79828 -34.62951 -32.75256 -31.42787 -29.56079 -27.46580 -25.99178 -23.72931 -23.67186 -22.16109 -20.77183 -19.37687 -18.49709 -18.30980 -17.49630 -17.02739 -16.94683 -16.61883 -16.44162 -16.25196 -15.13948 -14.83159 -14.66568 -14.49481 -14.23385 -13.93517 -13.65460 -13.32982 -13.13368 -12.87307 -12.81880 -12.57318 -12.51689 -12.40514 -12.09084 -12.02298 -11.81643 -11.56621 -11.24918 -10.88659 -10.47733 -9.88670 -9.55795 -8.11353 -6.24912 0.22160 0.27304 1.27814 1.42905 1.43898 1.54151 2.21248 2.46647 2.66690 3.17433 3.38005 3.62282 3.83069 4.03943 4.15589 4.24387 4.32821 4.42622 4.44783 4.68413 4.73904 4.89726 4.91680 5.05161 5.12106 5.15397 5.19200 5.28618 5.44778 5.50253 5.55686 5.61254 5.82066 5.98741 6.00006 6.26149 6.83189 7.08512 7.43289 8.94871 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.007073 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.429383 B = 3957.582974 C = 4902.393348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 H 0.004 0.996 4 C -0.523 4.523 5 H 0.064 0.936 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.267 1.267 12 C -0.055 4.055 13 H 0.083 0.917 14 C -0.058 4.058 15 C -0.134 4.134 16 C -0.102 4.102 17 C -0.121 4.121 18 C -0.087 4.087 19 C -0.153 4.153 20 C 0.077 3.923 21 F -0.150 7.150 22 C 0.499 3.501 23 O -0.547 6.547 24 O -0.510 6.510 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.015 0.985 28 H 0.262 0.738 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.155 0.845 35 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.588 -7.833 15.397 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.022 0.978 4 C -0.560 4.560 5 H 0.082 0.918 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.191 1.191 12 C -0.075 4.075 13 H 0.101 0.899 14 C -0.095 4.095 15 C -0.135 4.135 16 C -0.120 4.120 17 C -0.139 4.139 18 C -0.105 4.105 19 C -0.171 4.171 20 C 0.058 3.942 21 F -0.129 7.129 22 C 0.343 3.657 23 O -0.437 6.437 24 O -0.323 6.323 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.177 0.823 33 H 0.188 0.812 34 H 0.172 0.828 35 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 6.700 -7.653 14.930 18.065 hybrid contribution -0.371 0.297 -1.026 1.130 sum 6.329 -7.356 13.904 16.956 Atomic orbital electron populations 1.21740 0.98186 0.99398 0.99652 1.18570 0.92921 0.94461 0.90100 0.97799 1.21351 1.31418 1.12514 0.90755 0.91825 1.25708 0.95206 0.95579 1.01902 1.70021 1.37590 1.24046 1.24086 0.85607 0.79056 0.78306 0.79063 1.20041 1.21018 1.19113 1.21057 0.96018 1.00325 0.90085 0.89851 1.20374 0.92236 0.99855 0.97071 1.20136 1.03034 0.92835 0.97503 1.21139 0.98303 1.00572 0.92034 1.21544 0.98882 0.94386 0.99077 1.21430 0.97289 0.94740 0.97043 1.21461 1.01576 1.01503 0.92579 1.17971 1.02322 0.90822 0.83116 1.91480 1.90389 1.83604 1.47446 1.23658 0.73585 0.84950 0.83497 1.90615 1.57336 1.19182 1.76608 1.84579 1.63500 1.48470 1.35795 0.91782 0.94450 0.96592 0.92897 0.90936 0.89539 0.85697 0.82318 0.81213 0.82759 0.71923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 8.72 71.98 0.63 -6.01 16 2 C 0.06 2.99 1.81 -11.54 -0.02 2.97 16 3 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 4 C -0.52 -28.44 7.76 25.60 0.20 -28.25 16 5 H 0.06 3.39 6.73 -2.91 -0.02 3.37 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -53.44 11.32 21.45 0.24 -53.20 16 8 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 C -0.06 -2.37 1.79 -11.54 -0.02 -2.39 16 13 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 14 C -0.06 -2.30 4.39 29.85 0.13 -2.17 16 15 C -0.13 -4.39 4.75 -19.82 -0.09 -4.48 16 16 C -0.10 -2.76 9.17 22.26 0.20 -2.55 16 17 C -0.12 -2.34 10.04 22.27 0.22 -2.11 16 18 C -0.09 -1.51 10.04 22.26 0.22 -1.29 16 19 C -0.15 -3.44 10.03 22.31 0.22 -3.21 16 20 C 0.08 2.39 7.24 22.38 0.16 2.55 16 21 F -0.15 -5.40 16.58 44.97 0.75 -4.66 16 22 C 0.50 19.43 4.89 71.24 0.35 19.78 16 23 O -0.55 -23.57 17.43 21.97 0.38 -23.18 16 24 O -0.51 -15.73 13.42 -51.39 -0.69 -16.42 16 25 H 0.06 3.55 6.07 -2.39 -0.01 3.53 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.02 0.71 7.22 -2.39 -0.02 0.70 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.07 2.93 7.87 -2.39 -0.02 2.91 16 30 H 0.09 3.70 6.13 -2.39 -0.01 3.69 16 31 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.42 8.41 9.10 -74.06 -0.67 7.74 16 Total: -1.00 -67.52 303.57 5.80 -61.72 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.44 Total: 15.89 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 2.66 Total: -25.90 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.24 Total: -53.20 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.31 Total: -39.60 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.75 Total: -4.66 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.52 5.80 -61.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.198 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds