Wall clock time and date at job start Mon Mar 30 2020 07:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.50693 * 109.47315 * 120.00047 * 2 1 3 5 5 H 1.08007 * 120.00076 * 119.99712 * 4 2 1 6 6 C 1.37877 * 120.00390 * 300.00501 * 4 2 1 7 7 N 1.31514 * 120.00437 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99857 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47075 * 89.99870 * 8 6 4 10 10 H 1.48494 * 109.47103 * 210.00221 * 8 6 4 11 11 H 1.48508 * 109.46843 * 330.00319 * 8 6 4 12 12 C 1.53004 * 109.47278 * 240.00501 * 2 1 3 13 13 H 1.09000 * 109.46776 * 299.99537 * 12 2 1 14 14 C 1.52994 * 109.46975 * 179.97438 * 12 2 1 15 15 C 1.50698 * 109.47686 * 300.12177 * 14 12 2 16 16 C 1.38220 * 120.01402 * 264.10323 * 15 14 12 17 17 C 1.38221 * 120.02158 * 179.71699 * 16 15 14 18 18 C 1.38271 * 120.05466 * 0.54872 * 17 16 15 19 19 C 1.38175 * 120.02324 * 359.72504 * 18 17 16 20 20 C 1.38437 * 120.00787 * 84.36647 * 15 14 12 21 21 F 1.35102 * 120.03230 * 359.97438 * 20 15 14 22 22 C 1.50694 * 109.46976 * 59.99714 * 12 2 1 23 23 O 1.20825 * 120.00189 * 115.33471 * 22 12 2 24 24 O 1.34226 * 120.00291 * 295.32883 * 22 12 2 25 25 H 1.09001 * 109.47248 * 60.00265 * 1 2 3 26 26 H 1.09003 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47568 * 299.99549 * 1 2 3 28 28 H 0.96999 * 120.00291 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47403 * 60.12931 * 14 12 2 30 30 H 1.08999 * 109.46908 * 180.12206 * 14 12 2 31 31 H 1.07995 * 119.98505 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.97448 * 180.25035 * 17 16 15 33 33 H 1.08004 * 119.98791 * 179.74507 * 18 17 16 34 34 H 1.07995 * 120.01326 * 180.02562 * 19 18 17 35 35 H 0.96696 * 117.00402 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6257 1.2796 2.6542 9 1 -0.8022 0.8742 2.6993 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4923 12 6 2.0400 -0.7212 -1.2493 13 1 1.6767 -1.7488 -1.2493 14 6 3.5700 -0.7206 -1.2496 15 6 4.0719 0.7004 -1.2467 16 6 4.4179 1.3138 -2.4360 17 6 4.8727 2.6190 -2.4342 18 6 4.9929 3.3088 -1.2419 19 6 4.6529 2.6958 -0.0512 20 6 4.1917 1.3899 -0.0523 21 9 3.8583 0.7898 1.1113 22 6 1.5376 -0.0107 -2.4797 23 8 2.3195 0.5217 -3.2314 24 8 0.2216 0.0306 -2.7406 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 1.9032 -0.5282 4.4375 29 1 3.9337 -1.2362 -0.3607 30 1 3.9333 -1.2324 -2.1407 31 1 4.3289 0.7744 -3.3674 32 1 5.1390 3.0990 -3.3644 33 1 5.3523 4.3273 -1.2413 34 1 4.7465 3.2348 0.8799 35 1 -0.0527 0.4975 -3.5416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821973173.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:38 Heat of formation + Delta-G solvation = -98.238568 kcal Electronic energy + Delta-G solvation = -21635.030411 eV Core-core repulsion = 18320.199298 eV Total energy + Delta-G solvation = -3314.831112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.73700 -40.19612 -38.33506 -35.90171 -35.56972 -32.50419 -31.13938 -29.86608 -28.42251 -25.40728 -24.35830 -22.23214 -21.80337 -20.86686 -19.03250 -17.81838 -17.27796 -16.44447 -15.73951 -15.62936 -15.27779 -14.97449 -14.58993 -14.30653 -13.58899 -13.13914 -13.06246 -12.89988 -12.65450 -12.16342 -12.08702 -11.88750 -11.74111 -11.40052 -11.12096 -10.94177 -10.79673 -10.46608 -10.28758 -10.17825 -9.84561 -9.74914 -9.26991 -8.98400 -8.47257 -8.24274 -7.88941 -6.01611 -3.94030 1.74886 1.83596 2.71234 3.30490 3.42294 3.43304 3.58356 4.16874 4.46727 5.06368 5.20102 5.32597 5.38153 5.39749 5.49815 5.68825 5.76012 5.93998 5.97298 6.11090 6.25131 6.37905 6.52720 6.59216 6.67361 6.70550 6.78409 6.83059 6.86070 6.99142 7.06108 7.09507 7.40415 7.57895 7.74743 8.37674 8.50104 8.96746 9.60767 11.11446 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.010954 C = 0.008284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.136615 B = 2555.543494 C = 3379.230821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.016 3.984 3 H 0.031 0.969 4 C -0.489 4.489 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.898 5.898 8 Si 0.879 3.121 9 H -0.282 1.282 10 H -0.299 1.299 11 H -0.270 1.270 12 C -0.059 4.059 13 H 0.106 0.894 14 C -0.056 4.056 15 C -0.124 4.124 16 C -0.046 4.046 17 C -0.163 4.163 18 C -0.097 4.097 19 C -0.186 4.186 20 C 0.122 3.878 21 F -0.085 7.085 22 C 0.480 3.520 23 O -0.522 6.522 24 O -0.511 6.511 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.262 0.738 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 4.224 -11.539 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.003 4.003 3 H 0.049 0.951 4 C -0.527 4.527 5 H 0.097 0.903 6 C -0.121 4.121 7 N -0.536 5.536 8 Si 0.710 3.290 9 H -0.209 1.209 10 H -0.227 1.227 11 H -0.195 1.195 12 C -0.078 4.078 13 H 0.124 0.876 14 C -0.093 4.093 15 C -0.125 4.125 16 C -0.064 4.064 17 C -0.182 4.182 18 C -0.116 4.116 19 C -0.205 4.205 20 C 0.102 3.898 21 F -0.063 7.063 22 C 0.325 3.675 23 O -0.411 6.411 24 O -0.321 6.321 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.151 0.849 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.151 4.119 -11.124 12.056 hybrid contribution -1.018 1.251 -0.080 1.615 sum 1.133 5.370 -11.205 12.477 Atomic orbital electron populations 1.22344 0.98529 1.01258 0.99215 1.19287 0.92399 0.96600 0.91994 0.95078 1.20714 1.31173 1.12905 0.87876 0.90309 1.24783 0.95453 0.96032 0.95817 1.69856 1.45674 1.40295 0.97811 0.86993 0.80654 0.84569 0.76769 1.20918 1.22725 1.19493 1.21150 0.95411 1.00728 0.90538 0.87624 1.20401 0.92702 0.92806 1.03398 1.19848 1.02924 0.97710 0.92027 1.21037 0.93653 0.94396 0.97298 1.21013 1.04023 0.95614 0.97532 1.20843 0.99401 0.99243 0.92069 1.21132 1.05229 0.94784 0.99362 1.17962 0.96764 0.91454 0.83584 1.91977 1.87952 1.82118 1.44211 1.24302 0.79282 0.76987 0.86959 1.90625 1.56154 1.44562 1.49799 1.84767 1.27518 1.72484 1.47358 0.93487 0.92783 0.94464 0.92813 0.87935 0.91607 0.84880 0.86666 0.86395 0.85722 0.75010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 8.15 37.16 0.30 -3.05 16 2 C 0.02 0.36 0.89 -91.78 -0.08 0.28 16 3 H 0.03 0.76 4.73 -51.93 -0.25 0.51 16 4 C -0.49 -12.66 5.62 -34.44 -0.19 -12.85 16 5 H 0.08 2.17 6.96 -52.48 -0.37 1.81 16 6 C 0.08 2.24 4.71 -17.82 -0.08 2.16 16 7 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 8 Si 0.88 22.24 24.37 -169.99 -4.14 18.09 16 9 H -0.28 -6.98 6.87 56.52 0.39 -6.59 16 10 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 11 H -0.27 -6.71 6.53 56.52 0.37 -6.34 16 12 C -0.06 -1.11 2.18 -91.78 -0.20 -1.31 16 13 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 14 C -0.06 -1.02 4.57 -27.89 -0.13 -1.15 16 15 C -0.12 -2.34 4.21 -104.56 -0.44 -2.78 16 16 C -0.05 -0.78 7.38 -39.59 -0.29 -1.07 16 17 C -0.16 -2.51 10.04 -39.58 -0.40 -2.91 16 18 C -0.10 -1.50 10.04 -39.59 -0.40 -1.90 16 19 C -0.19 -3.34 10.03 -39.51 -0.40 -3.74 16 20 C 0.12 2.50 5.68 -39.42 -0.22 2.28 16 21 F -0.09 -2.03 11.61 2.25 0.03 -2.01 16 22 C 0.48 8.25 7.22 36.00 0.26 8.51 16 23 O -0.52 -9.26 12.35 -18.75 -0.23 -9.49 16 24 O -0.51 -7.45 10.62 -39.25 -0.42 -7.87 16 25 H 0.05 0.90 5.52 -51.93 -0.29 0.62 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.10 2.01 6.30 -51.93 -0.33 1.69 16 30 H 0.07 1.03 8.04 -51.93 -0.42 0.62 16 31 H 0.13 2.15 6.63 -52.49 -0.35 1.80 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 35 H 0.39 3.82 9.10 45.56 0.41 4.23 16 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -30.69 273.46 -5.18 -35.87 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -3.04 Total: 4.70 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -2.27 Total: -17.54 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.77 Total: -25.88 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.65 Total: -17.35 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.03 Total: -2.01 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.69 -5.18 -35.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973173.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.370 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds