Wall clock time and date at job start Mon Mar 30 2020 07:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.50693 * 109.47315 * 120.00047 * 2 1 3 5 5 H 1.08007 * 120.00076 * 119.99712 * 4 2 1 6 6 C 1.37877 * 120.00390 * 300.00501 * 4 2 1 7 7 N 1.31514 * 120.00437 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99857 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47075 * 89.99870 * 8 6 4 10 10 H 1.48494 * 109.47103 * 210.00221 * 8 6 4 11 11 H 1.48508 * 109.46843 * 330.00319 * 8 6 4 12 12 C 1.53004 * 109.47278 * 240.00501 * 2 1 3 13 13 H 1.09000 * 109.46776 * 299.99537 * 12 2 1 14 14 C 1.52994 * 109.46975 * 179.97438 * 12 2 1 15 15 C 1.50698 * 109.47686 * 300.12177 * 14 12 2 16 16 C 1.38220 * 120.01402 * 264.10323 * 15 14 12 17 17 C 1.38221 * 120.02158 * 179.71699 * 16 15 14 18 18 C 1.38271 * 120.05466 * 0.54872 * 17 16 15 19 19 C 1.38175 * 120.02324 * 359.72504 * 18 17 16 20 20 C 1.38437 * 120.00787 * 84.36647 * 15 14 12 21 21 F 1.35102 * 120.03230 * 359.97438 * 20 15 14 22 22 C 1.50694 * 109.46976 * 59.99714 * 12 2 1 23 23 O 1.20825 * 120.00189 * 115.33471 * 22 12 2 24 24 O 1.34226 * 120.00291 * 295.32883 * 22 12 2 25 25 H 1.09001 * 109.47248 * 60.00265 * 1 2 3 26 26 H 1.09003 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47568 * 299.99549 * 1 2 3 28 28 H 0.96999 * 120.00291 * 179.97438 * 7 6 4 29 29 H 1.09007 * 109.47403 * 60.12931 * 14 12 2 30 30 H 1.08999 * 109.46908 * 180.12206 * 14 12 2 31 31 H 1.07995 * 119.98505 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.97448 * 180.25035 * 17 16 15 33 33 H 1.08004 * 119.98791 * 179.74507 * 18 17 16 34 34 H 1.07995 * 120.01326 * 180.02562 * 19 18 17 35 35 H 0.96696 * 117.00402 * 180.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1372 -0.8597 3.5565 8 14 0.6257 1.2796 2.6542 9 1 -0.8022 0.8742 2.6993 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4923 12 6 2.0400 -0.7212 -1.2493 13 1 1.6767 -1.7488 -1.2493 14 6 3.5700 -0.7206 -1.2496 15 6 4.0719 0.7004 -1.2467 16 6 4.4179 1.3138 -2.4360 17 6 4.8727 2.6190 -2.4342 18 6 4.9929 3.3088 -1.2419 19 6 4.6529 2.6958 -0.0512 20 6 4.1917 1.3899 -0.0523 21 9 3.8583 0.7898 1.1113 22 6 1.5376 -0.0107 -2.4797 23 8 2.3195 0.5217 -3.2314 24 8 0.2216 0.0306 -2.7406 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 1.9032 -0.5282 4.4375 29 1 3.9337 -1.2362 -0.3607 30 1 3.9333 -1.2324 -2.1407 31 1 4.3289 0.7744 -3.3674 32 1 5.1390 3.0990 -3.3644 33 1 5.3523 4.3273 -1.2413 34 1 4.7465 3.2348 0.8799 35 1 -0.0527 0.4975 -3.5416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821973173.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:38 Heat of formation + Delta-G solvation = -117.904992 kcal Electronic energy + Delta-G solvation = -21635.883211 eV Core-core repulsion = 18320.199298 eV Total energy + Delta-G solvation = -3315.683912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.38007 -41.54608 -39.64592 -37.38282 -36.97313 -34.32710 -32.83606 -31.21647 -29.91223 -27.26759 -25.87583 -23.60598 -23.31302 -22.36836 -20.52259 -19.29151 -18.84513 -18.03026 -17.28741 -17.11991 -16.85324 -16.35352 -16.11458 -16.06634 -14.96074 -14.87773 -14.63024 -14.40055 -14.28300 -13.84172 -13.71477 -13.30008 -13.23090 -12.86440 -12.75752 -12.45935 -12.35927 -12.09133 -11.92051 -11.76204 -11.61255 -11.24029 -11.10421 -10.82211 -10.57809 -9.57693 -9.30853 -8.16716 -6.08107 0.42654 0.48266 1.27512 1.34740 1.36917 1.41013 2.33059 2.38740 2.84769 3.22123 3.71622 3.82601 4.01823 4.06363 4.14237 4.27957 4.44543 4.57818 4.60984 4.64472 4.76053 4.86080 4.97964 5.05390 5.13196 5.22961 5.30933 5.39987 5.48076 5.59439 5.65734 5.71661 5.75960 5.81216 6.22056 6.38172 6.85455 7.19440 7.48238 9.00238 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.010954 C = 0.008284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.136615 B = 2555.543494 C = 3379.230821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.018 3.982 3 H 0.017 0.983 4 C -0.463 4.463 5 H 0.050 0.950 6 C 0.031 3.969 7 N -0.947 5.947 8 Si 0.924 3.076 9 H -0.272 1.272 10 H -0.309 1.309 11 H -0.263 1.263 12 C -0.062 4.062 13 H 0.114 0.886 14 C -0.054 4.054 15 C -0.134 4.134 16 C -0.049 4.049 17 C -0.153 4.153 18 C -0.090 4.090 19 C -0.197 4.197 20 C 0.079 3.921 21 F -0.120 7.120 22 C 0.490 3.510 23 O -0.525 6.525 24 O -0.507 6.507 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.020 0.980 28 H 0.259 0.741 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.128 0.872 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.381 5.927 -14.707 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.001 4.001 3 H 0.035 0.965 4 C -0.501 4.501 5 H 0.068 0.932 6 C -0.166 4.166 7 N -0.589 5.589 8 Si 0.754 3.246 9 H -0.198 1.198 10 H -0.237 1.237 11 H -0.188 1.188 12 C -0.081 4.081 13 H 0.132 0.868 14 C -0.091 4.091 15 C -0.135 4.135 16 C -0.067 4.067 17 C -0.170 4.170 18 C -0.108 4.108 19 C -0.216 4.216 20 C 0.059 3.941 21 F -0.098 7.098 22 C 0.334 3.666 23 O -0.415 6.415 24 O -0.320 6.320 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.146 0.854 35 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 1.681 5.836 -14.338 15.571 hybrid contribution -0.803 0.739 0.754 1.327 sum 0.878 6.575 -13.584 15.117 Atomic orbital electron populations 1.22300 0.97348 1.01810 0.99683 1.19140 0.93190 0.95633 0.92127 0.96473 1.20883 1.28717 1.11263 0.89210 0.93160 1.25354 0.97083 0.98285 0.95859 1.69984 1.48364 1.42343 0.98200 0.86253 0.79840 0.82193 0.76288 1.19820 1.23730 1.18819 1.21004 0.95817 1.01061 0.90182 0.86829 1.20335 0.92551 0.93006 1.03236 1.19956 1.03471 0.97805 0.92280 1.21224 0.93454 0.95296 0.96709 1.21474 1.01770 0.94824 0.98980 1.21260 0.97851 1.00736 0.90916 1.21366 1.05282 0.94006 1.00946 1.18396 0.99610 0.92935 0.83122 1.91865 1.88953 1.82945 1.46028 1.23621 0.80097 0.76675 0.86220 1.90615 1.56578 1.44528 1.49825 1.84650 1.25757 1.72644 1.48988 0.90813 0.92248 0.96104 0.93228 0.90731 0.89062 0.83763 0.82984 0.82645 0.85387 0.72010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.36 8.15 71.98 0.59 -5.77 16 2 C 0.02 0.80 0.89 -11.54 -0.01 0.79 16 3 H 0.02 0.83 4.73 -2.39 -0.01 0.82 16 4 C -0.46 -24.67 5.62 25.60 0.14 -24.53 16 5 H 0.05 2.92 6.96 -2.91 -0.02 2.90 16 6 C 0.03 1.75 4.71 84.65 0.40 2.15 16 7 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 8 Si 0.92 46.55 24.37 68.60 1.67 48.23 16 9 H -0.27 -13.06 6.87 99.48 0.68 -12.38 16 10 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 11 H -0.26 -12.82 6.53 99.48 0.65 -12.17 16 12 C -0.06 -2.24 2.18 -11.54 -0.03 -2.27 16 13 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 14 C -0.05 -1.95 4.57 29.85 0.14 -1.82 16 15 C -0.13 -4.94 4.21 -19.82 -0.08 -5.02 16 16 C -0.05 -1.51 7.38 22.26 0.16 -1.35 16 17 C -0.15 -4.03 10.04 22.27 0.22 -3.81 16 18 C -0.09 -2.46 10.04 22.26 0.22 -2.23 16 19 C -0.20 -6.88 10.03 22.31 0.22 -6.65 16 20 C 0.08 3.25 5.68 22.38 0.13 3.38 16 21 F -0.12 -6.00 11.61 44.97 0.52 -5.48 16 22 C 0.49 15.32 7.22 71.23 0.51 15.84 16 23 O -0.53 -16.76 12.35 21.97 0.27 -16.48 16 24 O -0.51 -12.77 10.62 -51.38 -0.55 -13.31 16 25 H 0.07 2.61 5.52 -2.39 -0.01 2.60 16 26 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.02 0.91 3.27 -2.39 -0.01 0.91 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.07 3.07 6.30 -2.38 -0.02 3.06 16 30 H 0.09 2.75 8.04 -2.39 -0.02 2.73 16 31 H 0.14 4.12 6.63 -2.91 -0.02 4.10 16 32 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.42 6.18 9.10 -74.06 -0.67 5.50 16 Total: -1.00 -68.10 273.46 5.22 -62.88 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.38 Total: 13.89 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 2.62 Total: -31.30 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.30 Total: -58.41 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.27 Total: -29.80 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.52 Total: -5.48 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.67 Total: 48.23 kcal Total: -68.10 5.22 -62.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973173.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.024 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds