Wall clock time and date at job start Mon Mar 30 2020 06:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99843 * 2 1 4 4 H 1.48496 * 109.46992 * 240.00057 * 3 2 1 5 5 H 1.48503 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47001 * 119.99796 * 3 2 1 7 7 C 1.37871 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00666 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46952 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46682 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46783 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.47022 * 305.00026 * 12 11 10 14 14 C 1.50696 * 109.46873 * 64.99850 * 12 11 10 15 15 O 1.20833 * 119.99653 * 119.99903 * 14 12 11 16 16 O 1.34227 * 120.00639 * 299.99979 * 14 12 11 17 17 C 1.50698 * 109.46966 * 185.00054 * 12 11 10 18 18 C 1.38244 * 119.97167 * 119.99928 * 17 12 11 19 19 C 1.38205 * 120.02298 * 180.02562 * 18 17 12 20 20 C 1.38459 * 119.97412 * 0.24026 * 19 18 17 21 21 F 1.35099 * 120.02759 * 179.72396 * 20 19 18 22 22 C 1.38466 * 119.94836 * 359.48301 * 20 19 18 23 23 C 1.38196 * 119.97140 * 0.53984 * 22 20 19 24 24 H 0.97002 * 120.00360 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47364 * 59.99584 * 9 7 2 26 26 H 1.09003 * 109.46821 * 299.99648 * 9 7 2 27 27 H 1.08991 * 109.47298 * 59.99481 * 10 9 7 28 28 H 1.09003 * 109.46896 * 299.99388 * 10 9 7 29 29 H 1.09003 * 109.46918 * 60.00275 * 11 10 9 30 30 H 1.08989 * 109.47225 * 299.99468 * 11 10 9 31 31 H 0.96695 * 117.00324 * 179.97438 * 16 14 12 32 32 H 1.07999 * 119.98898 * 0.02589 * 18 17 12 33 33 H 1.08002 * 120.00949 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00962 * 180.25357 * 22 20 19 35 35 H 1.08000 * 119.98525 * 179.74601 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4804 -4.9870 -0.0020 12 6 2.4747 -6.1500 -0.0024 13 1 3.1588 -6.0428 -0.8441 14 6 3.2574 -6.1420 1.2853 15 8 3.2115 -7.0955 2.0261 16 8 4.0057 -5.0758 1.6094 17 6 1.7253 -7.4515 -0.1268 18 6 1.9686 -8.2887 -1.1996 19 6 1.2816 -9.4824 -1.3150 20 6 0.3458 -9.8372 -0.3582 21 9 -0.3304 -11.0011 -0.4729 22 6 0.1071 -9.0005 0.7189 23 6 0.7950 -7.8072 0.8319 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8714 -3.6046 0.8889 28 1 2.8727 -3.6039 -0.8910 29 1 0.8541 -5.0446 -0.8923 30 1 0.8534 -5.0450 0.8877 31 1 4.4895 -5.1168 2.4456 32 1 2.6958 -8.0099 -1.9478 33 1 1.4716 -10.1361 -2.1535 34 1 -0.6196 -9.2782 1.4679 35 1 0.6060 -7.1525 1.6698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821977436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:37 Heat of formation + Delta-G solvation = -135.238368 kcal Electronic energy + Delta-G solvation = -19423.343586 eV Core-core repulsion = 16106.908042 eV Total energy + Delta-G solvation = -3316.435544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.99051 -40.64410 -38.91108 -36.00812 -35.42086 -33.13290 -31.30249 -31.15208 -28.47222 -25.76751 -23.33636 -23.12438 -22.57307 -20.47355 -19.96668 -17.95175 -17.77413 -16.99030 -16.32961 -15.96570 -15.67296 -15.66972 -15.27788 -14.48002 -14.21374 -13.85498 -13.65898 -13.44713 -13.22239 -12.53301 -12.33747 -12.29983 -11.87920 -11.46144 -11.39874 -11.33239 -11.07028 -10.79983 -10.54507 -10.46461 -10.27650 -9.59601 -9.31435 -9.18469 -9.08646 -8.62600 -8.32964 -5.98599 -4.00692 0.98599 1.15173 2.29760 3.07948 3.33645 3.38247 3.40487 3.60309 4.14475 4.42520 4.48373 4.57779 4.77157 5.00285 5.13992 5.27398 5.34389 5.35749 5.37317 5.78080 5.81893 5.88079 5.99058 6.04236 6.13462 6.33069 6.41094 6.59609 6.73616 6.76509 6.93083 7.20444 7.69807 7.84163 8.00953 8.03326 8.44962 9.06639 9.63291 11.12728 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029527 B = 0.003851 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.060648 B = 7268.549757 C = 7781.891425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.120 4.120 11 C -0.108 4.108 12 C -0.042 4.042 13 H 0.117 0.883 14 C 0.488 3.512 15 O -0.520 6.520 16 O -0.496 6.496 17 C -0.081 4.081 18 C -0.080 4.080 19 C -0.157 4.157 20 C 0.095 3.905 21 F -0.143 7.143 22 C -0.154 4.154 23 C -0.055 4.055 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.403 0.597 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -17.214 -0.454 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.158 4.158 11 C -0.145 4.145 12 C -0.061 4.061 13 H 0.135 0.865 14 C 0.331 3.669 15 O -0.409 6.409 16 O -0.307 6.307 17 C -0.081 4.081 18 C -0.098 4.098 19 C -0.176 4.176 20 C 0.076 3.924 21 F -0.122 7.122 22 C -0.173 4.173 23 C -0.073 4.073 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.262 0.738 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.618 -17.375 -0.629 17.759 hybrid contribution 0.595 0.694 0.539 1.061 sum 4.213 -16.682 -0.090 17.206 Atomic orbital electron populations 1.69954 1.06051 1.26643 1.50992 1.25025 0.94825 0.99209 0.95437 0.86680 0.79588 0.83251 0.78596 1.20262 1.21362 1.20280 1.21230 0.93037 0.91070 1.50358 0.92678 1.19088 0.93974 0.91457 0.97042 1.21896 0.99163 0.92790 1.01914 1.21770 0.96686 0.92946 1.03123 1.20141 0.97160 0.94704 0.94083 0.86542 1.23309 0.76670 0.79134 0.87799 1.90708 1.62326 1.35814 1.52068 1.84748 1.58384 1.42779 1.44815 1.19461 0.97675 0.95191 0.95780 1.20884 0.98771 0.92686 0.97457 1.21048 0.97978 0.98676 0.99849 1.17736 0.94513 0.83172 0.96943 1.91485 1.78596 1.46076 1.96022 1.21108 1.02642 0.95254 0.98260 1.20854 0.93444 0.95232 0.97787 0.93004 0.96765 0.96808 0.90915 0.93198 0.90407 0.91707 0.73794 0.84771 0.84725 0.84712 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.12 -2.30 4.79 -26.73 -0.13 -2.43 16 11 C -0.11 -1.65 4.41 -26.73 -0.12 -1.77 16 12 C -0.04 -0.54 2.50 -92.92 -0.23 -0.77 16 13 H 0.12 1.29 7.87 -51.93 -0.41 0.88 16 14 C 0.49 6.71 7.47 36.00 0.27 6.97 16 15 O -0.52 -8.15 15.87 -18.76 -0.30 -8.45 16 16 O -0.50 -6.23 10.57 -39.25 -0.41 -6.65 16 17 C -0.08 -1.00 4.40 -104.62 -0.46 -1.46 16 18 C -0.08 -0.86 9.67 -39.59 -0.38 -1.24 16 19 C -0.16 -1.67 10.03 -39.51 -0.40 -2.06 16 20 C 0.10 1.14 7.30 -39.42 -0.29 0.85 16 21 F -0.14 -1.74 17.27 2.25 0.04 -1.71 16 22 C -0.15 -1.82 10.03 -39.51 -0.40 -2.22 16 23 C -0.06 -0.70 7.98 -39.59 -0.32 -1.02 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 1.38 5.46 -51.93 -0.28 1.10 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.01 7.57 -51.94 -0.39 0.61 16 31 H 0.40 3.31 9.10 45.56 0.41 3.73 16 32 H 0.13 1.10 7.94 -52.49 -0.42 0.69 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.13 1.65 7.57 -52.49 -0.40 1.26 16 LS Contribution 306.22 15.07 4.61 4.61 Total: -1.00 -32.50 306.22 -6.90 -39.40 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.56 Total: 0.39 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -3.00 Total: -17.99 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.71 Total: -15.09 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.50 -6.90 -39.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821977436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.834 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds