Wall clock time and date at job start Mon Mar 30 2020 06:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99843 * 2 1 4 4 H 1.48496 * 109.46992 * 240.00057 * 3 2 1 5 5 H 1.48503 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47001 * 119.99796 * 3 2 1 7 7 C 1.37871 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00666 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46952 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46682 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46783 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.47022 * 305.00026 * 12 11 10 14 14 C 1.50696 * 109.46873 * 64.99850 * 12 11 10 15 15 O 1.20833 * 119.99653 * 119.99903 * 14 12 11 16 16 O 1.34227 * 120.00639 * 299.99979 * 14 12 11 17 17 C 1.50698 * 109.46966 * 185.00054 * 12 11 10 18 18 C 1.38244 * 119.97167 * 119.99928 * 17 12 11 19 19 C 1.38205 * 120.02298 * 180.02562 * 18 17 12 20 20 C 1.38459 * 119.97412 * 0.24026 * 19 18 17 21 21 F 1.35099 * 120.02759 * 179.72396 * 20 19 18 22 22 C 1.38466 * 119.94836 * 359.48301 * 20 19 18 23 23 C 1.38196 * 119.97140 * 0.53984 * 22 20 19 24 24 H 0.97002 * 120.00360 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47364 * 59.99584 * 9 7 2 26 26 H 1.09003 * 109.46821 * 299.99648 * 9 7 2 27 27 H 1.08991 * 109.47298 * 59.99481 * 10 9 7 28 28 H 1.09003 * 109.46896 * 299.99388 * 10 9 7 29 29 H 1.09003 * 109.46918 * 60.00275 * 11 10 9 30 30 H 1.08989 * 109.47225 * 299.99468 * 11 10 9 31 31 H 0.96695 * 117.00324 * 179.97438 * 16 14 12 32 32 H 1.07999 * 119.98898 * 0.02589 * 18 17 12 33 33 H 1.08002 * 120.00949 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00962 * 180.25357 * 22 20 19 35 35 H 1.08000 * 119.98525 * 179.74601 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4804 -4.9870 -0.0020 12 6 2.4747 -6.1500 -0.0024 13 1 3.1588 -6.0428 -0.8441 14 6 3.2574 -6.1420 1.2853 15 8 3.2115 -7.0955 2.0261 16 8 4.0057 -5.0758 1.6094 17 6 1.7253 -7.4515 -0.1268 18 6 1.9686 -8.2887 -1.1996 19 6 1.2816 -9.4824 -1.3150 20 6 0.3458 -9.8372 -0.3582 21 9 -0.3304 -11.0011 -0.4729 22 6 0.1071 -9.0005 0.7189 23 6 0.7950 -7.8072 0.8319 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8714 -3.6046 0.8889 28 1 2.8727 -3.6039 -0.8910 29 1 0.8541 -5.0446 -0.8923 30 1 0.8534 -5.0450 0.8877 31 1 4.4895 -5.1168 2.4456 32 1 2.6958 -8.0099 -1.9478 33 1 1.4716 -10.1361 -2.1535 34 1 -0.6196 -9.2782 1.4679 35 1 0.6060 -7.1525 1.6698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821977436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:36 Heat of formation + Delta-G solvation = -153.888664 kcal Electronic energy + Delta-G solvation = -19424.152323 eV Core-core repulsion = 16106.908042 eV Total energy + Delta-G solvation = -3317.244282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.90537 -41.68389 -39.83313 -37.10915 -36.77938 -34.95655 -32.75980 -32.11010 -29.82188 -27.35295 -24.74516 -24.11595 -23.71794 -21.91794 -21.17997 -19.02860 -18.66326 -18.38485 -18.01803 -16.98123 -16.70375 -16.59884 -16.54962 -16.21579 -15.31623 -15.13781 -14.59272 -14.50465 -14.37950 -14.07687 -13.81111 -13.51400 -13.07711 -12.94677 -12.84543 -12.56807 -12.51964 -12.30593 -12.11268 -11.89612 -11.44682 -11.26828 -11.16133 -11.02015 -10.48187 -10.04395 -9.58517 -8.14865 -6.25087 0.07846 0.29386 1.23033 1.43219 1.45800 1.53537 2.14131 2.44889 2.70198 3.18561 3.26298 3.46200 3.70245 3.94688 3.99842 4.14798 4.32611 4.39086 4.41111 4.58497 4.68477 4.94262 4.96535 5.00220 5.13885 5.16184 5.23325 5.30659 5.40660 5.51182 5.64414 5.66673 5.87330 5.90463 5.98622 6.33020 6.93142 7.06792 7.44094 8.96647 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029527 B = 0.003851 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.060648 B = 7268.549757 C = 7781.891425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.961 3.039 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.107 4.107 11 C -0.098 4.098 12 C -0.033 4.033 13 H 0.142 0.858 14 C 0.491 3.509 15 O -0.542 6.542 16 O -0.502 6.502 17 C -0.093 4.093 18 C -0.076 4.076 19 C -0.153 4.153 20 C 0.082 3.918 21 F -0.147 7.147 22 C -0.162 4.162 23 C -0.072 4.072 24 H 0.262 0.738 25 H -0.010 1.010 26 H -0.014 1.014 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.422 0.578 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.145 0.855 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 -17.530 -1.327 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.135 4.135 12 C -0.052 4.052 13 H 0.160 0.840 14 C 0.335 3.665 15 O -0.433 6.433 16 O -0.315 6.315 17 C -0.093 4.093 18 C -0.094 4.094 19 C -0.172 4.172 20 C 0.063 3.937 21 F -0.126 7.126 22 C -0.181 4.181 23 C -0.090 4.090 24 H 0.070 0.930 25 H 0.009 0.991 26 H 0.004 0.996 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.283 0.717 32 H 0.182 0.818 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.336 -17.696 -1.491 18.543 hybrid contribution 0.052 0.774 0.836 1.140 sum 5.387 -16.922 -0.656 17.771 Atomic orbital electron populations 1.70096 1.07818 1.27635 1.52116 1.25969 0.95699 1.03295 0.95005 0.85558 0.78285 0.78332 0.79220 1.19059 1.21215 1.19216 1.21725 0.93662 0.92390 1.49860 0.91952 1.19033 0.94544 0.93417 0.94512 1.21685 0.97954 0.92333 1.02461 1.21552 0.96842 0.92164 1.02952 1.20055 0.96735 0.93752 0.94670 0.84038 1.23437 0.76451 0.78891 0.87765 1.90703 1.63151 1.36702 1.52741 1.84680 1.58352 1.42296 1.46155 1.19529 0.97869 0.95421 0.96527 1.21214 0.98867 0.92102 0.97233 1.21369 0.96926 0.98897 0.99994 1.17957 0.95109 0.83155 0.97483 1.91474 1.78788 1.46264 1.96065 1.21248 1.02895 0.95120 0.98803 1.20906 0.94327 0.95659 0.98110 0.92966 0.99119 0.99579 0.90647 0.92309 0.90089 0.92595 0.71684 0.81773 0.82205 0.83726 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.77 13.29 21.45 0.28 -56.48 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.11 -4.01 4.79 30.60 0.15 -3.87 16 11 C -0.10 -2.91 4.41 30.60 0.13 -2.78 16 12 C -0.03 -0.79 2.50 -12.28 -0.03 -0.82 16 13 H 0.14 2.66 7.87 -2.39 -0.02 2.64 16 14 C 0.49 12.77 7.47 71.23 0.53 13.30 16 15 O -0.54 -16.48 15.87 21.94 0.35 -16.13 16 16 O -0.50 -11.74 10.57 -51.39 -0.54 -12.28 16 17 C -0.09 -2.16 4.40 -19.86 -0.09 -2.25 16 18 C -0.08 -1.43 9.67 22.26 0.22 -1.21 16 19 C -0.15 -2.88 10.03 22.31 0.22 -2.66 16 20 C 0.08 1.85 7.30 22.38 0.16 2.01 16 21 F -0.15 -3.43 17.27 44.97 0.78 -2.65 16 22 C -0.16 -3.76 10.03 22.31 0.22 -3.54 16 23 C -0.07 -1.80 7.98 22.26 0.18 -1.62 16 24 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.08 2.79 5.46 -2.39 -0.01 2.78 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 1.76 7.57 -2.39 -0.02 1.74 16 31 H 0.42 6.23 9.10 -74.06 -0.67 5.56 16 32 H 0.16 2.02 7.94 -2.91 -0.02 1.99 16 33 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 35 H 0.12 3.18 7.57 -2.91 -0.02 3.16 16 Total: -1.00 -69.80 306.22 5.87 -63.93 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.43 Total: 9.52 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 2.54 Total: -31.60 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.28 Total: -56.48 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.19 Total: -28.41 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -69.80 5.87 -63.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821977436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.961 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds