Wall clock time and date at job start Mon Mar 30 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21313 * 120.00165 * 2 1 4 4 C 1.46642 * 119.99831 * 179.97438 * 2 1 3 5 5 C 1.40098 * 120.19684 * 0.21138 * 4 2 1 6 6 C 1.37542 * 119.90221 * 180.25061 * 5 4 2 7 7 C 1.38945 * 120.31543 * 359.79198 * 6 5 4 8 8 F 1.35099 * 119.80149 * 179.97438 * 7 6 5 9 9 C 1.38363 * 120.39679 * 359.97413 * 7 6 5 10 10 C 1.38540 * 120.08667 * 0.02562 * 9 7 6 11 11 O 1.35595 * 120.15641 * 179.97438 * 10 9 7 12 12 C 1.42899 * 116.99982 * 354.51906 * 11 10 9 13 13 H 1.09004 * 109.46852 * 324.94735 * 12 11 10 14 14 C 1.52998 * 109.47424 * 84.94868 * 12 11 10 15 15 C 1.53007 * 109.47080 * 204.94840 * 12 11 10 16 16 C 1.50694 * 109.47231 * 64.99884 * 15 12 11 17 17 H 1.07996 * 120.00214 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99731 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00310 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99861 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47205 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46944 * 120.00396 * 20 18 16 23 23 H 1.48494 * 109.47543 * 240.00607 * 20 18 16 24 24 H 1.09003 * 109.47229 * 269.99739 * 1 2 3 25 25 H 1.09003 * 109.47107 * 30.00003 * 1 2 3 26 26 H 1.09002 * 109.47462 * 149.99854 * 1 2 3 27 27 H 1.08002 * 120.04719 * 0.02562 * 5 4 2 28 28 H 1.08008 * 119.84466 * 179.76625 * 6 5 4 29 29 H 1.07994 * 119.95286 * 180.02562 * 9 7 6 30 30 H 1.08994 * 109.47435 * 59.99340 * 14 12 11 31 31 H 1.08997 * 109.47279 * 180.02562 * 14 12 11 32 32 H 1.09006 * 109.46904 * 300.00093 * 14 12 11 33 33 H 1.08998 * 109.46813 * 304.99122 * 15 12 11 34 34 H 1.09006 * 109.46923 * 184.99974 * 15 12 11 35 35 H 0.96995 * 120.00176 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2402 -1.2700 0.0006 5 6 1.5438 -2.4856 -0.0034 6 6 2.2376 -3.6733 0.0024 7 6 3.6270 -3.6738 0.0078 8 9 4.2980 -4.8464 0.0139 9 6 4.3276 -2.4807 0.0068 10 6 3.6455 -1.2748 0.0010 11 8 4.3307 -0.1047 0.0006 12 6 5.7517 -0.1849 0.1279 13 1 6.0113 -1.0142 0.7861 14 6 6.3752 -0.4133 -1.2504 15 6 6.2854 1.1216 0.7190 16 6 5.7678 1.2854 2.1247 17 1 5.1231 0.5328 2.5539 18 6 6.1183 2.3956 2.8633 19 7 6.9038 3.3119 2.3409 20 14 5.4761 2.5991 4.6057 21 1 4.6176 1.4389 4.9555 22 1 6.6202 2.6702 5.5497 23 1 4.6804 3.8494 4.6972 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 0.4638 -2.4902 -0.0072 28 1 1.6998 -4.6099 0.0032 29 1 5.4075 -2.4895 0.0106 30 1 6.1156 0.4158 -1.9086 31 1 7.4591 -0.4750 -1.1532 32 1 5.9950 -1.3441 -1.6715 33 1 5.9505 1.9600 0.1083 34 1 7.3751 1.0953 0.7337 35 1 7.1506 4.0928 2.8607 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829178858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:59 Heat of formation + Delta-G solvation = -103.875108 kcal Electronic energy + Delta-G solvation = -20195.146364 eV Core-core repulsion = 16880.070833 eV Total energy + Delta-G solvation = -3315.075531 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.99818 -40.27955 -38.38502 -37.10730 -33.50605 -31.80228 -31.56359 -29.89061 -28.84141 -27.48476 -23.75694 -23.56125 -22.53320 -20.45243 -19.67082 -18.26963 -16.66631 -16.39918 -16.29080 -15.87308 -15.70816 -14.85816 -14.66673 -14.50294 -14.38998 -14.17832 -13.81155 -12.98643 -12.87454 -12.64392 -12.21120 -12.12230 -11.91906 -11.78915 -11.58221 -11.45946 -11.20240 -10.98544 -10.75822 -10.43402 -10.12016 -9.46276 -9.29677 -9.11817 -8.88602 -8.36337 -8.04870 -5.99222 -3.99919 0.69218 1.38050 2.59996 3.33689 3.40924 3.45778 3.60486 3.76661 4.12638 4.30807 4.48674 4.67166 4.94208 5.12320 5.16563 5.35480 5.39444 5.44504 5.50448 5.54157 5.66045 5.82868 5.85981 5.99088 6.02646 6.08121 6.14878 6.35098 6.55345 6.66504 6.71023 7.44012 7.57759 7.94603 7.96726 8.00294 8.36499 9.02293 9.63031 11.12518 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.006554 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.860801 B = 4271.162406 C = 4914.040673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.381 3.619 3 O -0.420 6.420 4 C -0.229 4.229 5 C -0.010 4.010 6 C -0.222 4.222 7 C 0.167 3.833 8 F -0.136 7.136 9 C -0.269 4.269 10 C 0.232 3.768 11 O -0.249 6.249 12 C 0.077 3.923 13 H 0.065 0.935 14 C -0.178 4.178 15 C 0.027 3.973 16 C -0.510 4.510 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.137 0.863 29 H 0.149 0.851 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.040 0.960 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.630 -13.361 -6.455 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.257 3.743 3 O -0.292 6.292 4 C -0.231 4.231 5 C -0.029 4.029 6 C -0.241 4.241 7 C 0.148 3.852 8 F -0.115 7.115 9 C -0.288 4.288 10 C 0.180 3.820 11 O -0.158 6.158 12 C 0.021 3.979 13 H 0.083 0.917 14 C -0.235 4.235 15 C -0.009 4.009 16 C -0.549 4.549 17 H 0.072 0.928 18 C -0.142 4.142 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.155 0.845 29 H 0.167 0.833 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.232 -12.432 -6.433 17.338 hybrid contribution 0.015 -0.407 1.020 1.099 sum -10.217 -12.839 -5.412 17.278 Atomic orbital electron populations 1.22210 0.94458 1.04241 1.04369 1.22023 0.91051 0.87674 0.73594 1.90729 1.71428 1.33403 1.33678 1.20061 0.91038 0.96115 1.15858 1.21060 0.99889 0.89843 0.92058 1.20821 0.91882 0.99697 1.11728 1.17683 0.90056 0.80510 0.96971 1.91501 1.80821 1.45913 1.93254 1.21322 1.02047 0.90991 1.14460 1.19198 0.90935 0.85880 0.85944 1.86524 1.22013 1.24767 1.82506 1.23120 0.76046 1.03406 0.95287 0.91705 1.22426 1.01534 1.01520 0.98067 1.19267 0.96070 0.89491 0.96114 1.21093 1.29474 1.06261 0.98035 0.92751 1.24950 0.95141 0.95773 0.98383 1.69951 1.35970 1.10541 1.37125 0.86528 0.78670 0.78184 0.84625 1.19800 1.21050 1.20894 0.88913 0.89701 0.90142 0.83821 0.84549 0.83348 0.91580 0.91013 0.93328 0.94948 0.94195 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 9.75 36.00 0.35 -1.68 16 2 C 0.38 6.18 7.21 -30.92 -0.22 5.96 16 3 O -0.42 -9.13 15.90 -16.41 -0.26 -9.39 16 4 C -0.23 -3.57 5.88 -104.94 -0.62 -4.19 16 5 C -0.01 -0.12 9.35 -39.14 -0.37 -0.48 16 6 C -0.22 -2.54 10.00 -39.57 -0.40 -2.94 16 7 C 0.17 2.32 7.30 -39.27 -0.29 2.03 16 8 F -0.14 -1.86 17.26 2.25 0.04 -1.82 16 9 C -0.27 -4.27 8.21 -39.42 -0.32 -4.60 16 10 C 0.23 4.22 6.62 -38.60 -0.26 3.97 16 11 O -0.25 -5.47 7.62 -40.41 -0.31 -5.78 16 12 C 0.08 1.61 2.17 -26.73 -0.06 1.55 16 13 H 0.07 1.31 6.31 -51.93 -0.33 0.98 16 14 C -0.18 -3.04 9.17 37.16 0.34 -2.70 16 15 C 0.03 0.71 4.68 -27.88 -0.13 0.58 16 16 C -0.51 -14.82 8.88 -34.44 -0.31 -15.12 16 17 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 20 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 0.57 6.45 -51.93 -0.34 0.24 16 27 H 0.14 1.04 6.35 -52.49 -0.33 0.71 16 28 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 29 H 0.15 2.29 5.42 -52.49 -0.28 2.01 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.72 6.91 -51.93 -0.36 0.37 16 33 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 304.01 15.07 4.58 4.58 Total: -1.00 -33.68 304.01 -6.74 -40.42 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.14 Total: -2.90 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.37 Total: -15.99 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.74 Total: -26.58 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.57 Total: -15.17 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.68 -6.74 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.458 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds