Wall clock time and date at job start Mon Mar 30 2020 07:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21313 * 120.00165 * 2 1 4 4 C 1.46642 * 119.99831 * 179.97438 * 2 1 3 5 5 C 1.40098 * 120.19684 * 0.21138 * 4 2 1 6 6 C 1.37542 * 119.90221 * 180.25061 * 5 4 2 7 7 C 1.38945 * 120.31543 * 359.79198 * 6 5 4 8 8 F 1.35099 * 119.80149 * 179.97438 * 7 6 5 9 9 C 1.38363 * 120.39679 * 359.97413 * 7 6 5 10 10 C 1.38540 * 120.08667 * 0.02562 * 9 7 6 11 11 O 1.35595 * 120.15641 * 179.97438 * 10 9 7 12 12 C 1.42899 * 116.99982 * 354.51906 * 11 10 9 13 13 H 1.09004 * 109.46852 * 324.94735 * 12 11 10 14 14 C 1.52998 * 109.47424 * 84.94868 * 12 11 10 15 15 C 1.53007 * 109.47080 * 204.94840 * 12 11 10 16 16 C 1.50694 * 109.47231 * 64.99884 * 15 12 11 17 17 H 1.07996 * 120.00214 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99731 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00310 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99861 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47205 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46944 * 120.00396 * 20 18 16 23 23 H 1.48494 * 109.47543 * 240.00607 * 20 18 16 24 24 H 1.09003 * 109.47229 * 269.99739 * 1 2 3 25 25 H 1.09003 * 109.47107 * 30.00003 * 1 2 3 26 26 H 1.09002 * 109.47462 * 149.99854 * 1 2 3 27 27 H 1.08002 * 120.04719 * 0.02562 * 5 4 2 28 28 H 1.08008 * 119.84466 * 179.76625 * 6 5 4 29 29 H 1.07994 * 119.95286 * 180.02562 * 9 7 6 30 30 H 1.08994 * 109.47435 * 59.99340 * 14 12 11 31 31 H 1.08997 * 109.47279 * 180.02562 * 14 12 11 32 32 H 1.09006 * 109.46904 * 300.00093 * 14 12 11 33 33 H 1.08998 * 109.46813 * 304.99122 * 15 12 11 34 34 H 1.09006 * 109.46923 * 184.99974 * 15 12 11 35 35 H 0.96995 * 120.00176 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2402 -1.2700 0.0006 5 6 1.5438 -2.4856 -0.0034 6 6 2.2376 -3.6733 0.0024 7 6 3.6270 -3.6738 0.0078 8 9 4.2980 -4.8464 0.0139 9 6 4.3276 -2.4807 0.0068 10 6 3.6455 -1.2748 0.0010 11 8 4.3307 -0.1047 0.0006 12 6 5.7517 -0.1849 0.1279 13 1 6.0113 -1.0142 0.7861 14 6 6.3752 -0.4133 -1.2504 15 6 6.2854 1.1216 0.7190 16 6 5.7678 1.2854 2.1247 17 1 5.1231 0.5328 2.5539 18 6 6.1183 2.3956 2.8633 19 7 6.9038 3.3119 2.3409 20 14 5.4761 2.5991 4.6057 21 1 4.6176 1.4389 4.9555 22 1 6.6202 2.6702 5.5497 23 1 4.6804 3.8494 4.6972 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 0.4638 -2.4902 -0.0072 28 1 1.6998 -4.6099 0.0032 29 1 5.4075 -2.4895 0.0106 30 1 6.1156 0.4158 -1.9086 31 1 7.4591 -0.4750 -1.1532 32 1 5.9950 -1.3441 -1.6715 33 1 5.9505 1.9600 0.1083 34 1 7.3751 1.0953 0.7337 35 1 7.1506 4.0928 2.8607 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829178858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:58 Heat of formation + Delta-G solvation = -124.117139 kcal Electronic energy + Delta-G solvation = -20196.024124 eV Core-core repulsion = 16880.070833 eV Total energy + Delta-G solvation = -3315.953291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.07077 -41.56481 -39.77882 -38.35336 -35.52079 -33.54452 -32.80344 -31.03132 -29.88423 -29.40680 -25.44964 -24.84488 -23.95864 -21.93825 -20.90998 -19.54267 -18.60823 -17.90528 -17.47601 -17.08582 -16.83782 -16.61539 -16.17366 -15.69482 -15.64174 -15.46484 -15.26378 -14.47494 -14.09236 -13.90112 -13.84929 -13.62975 -13.38894 -13.08559 -12.97289 -12.79331 -12.72516 -12.61392 -12.35297 -12.21793 -11.84325 -11.43500 -11.14920 -10.64394 -10.55314 -10.01138 -9.28814 -8.25562 -6.34265 -0.43730 0.28130 1.31778 1.34270 1.44143 1.46316 2.25101 2.35954 2.63940 3.02738 3.09063 3.25249 3.64590 3.85663 3.96664 4.03655 4.13383 4.22061 4.31414 4.43789 4.58639 4.69601 4.74196 4.83846 4.95604 5.02440 5.03603 5.09262 5.13543 5.29184 5.35271 5.42612 5.69784 5.71793 6.12394 6.49934 6.75681 6.81841 7.32601 8.86875 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.006554 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.860801 B = 4271.162406 C = 4914.040673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.375 3.625 3 O -0.496 6.496 4 C -0.250 4.250 5 C 0.015 3.985 6 C -0.202 4.202 7 C 0.165 3.835 8 F -0.134 7.134 9 C -0.282 4.282 10 C 0.191 3.809 11 O -0.287 6.287 12 C 0.085 3.915 13 H 0.068 0.932 14 C -0.166 4.166 15 C 0.031 3.969 16 C -0.528 4.528 17 H 0.046 0.954 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.268 1.268 22 H -0.268 1.268 23 H -0.279 1.279 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.198 0.802 28 H 0.180 0.820 29 H 0.142 0.858 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.072 0.928 33 H -0.006 1.006 34 H 0.029 0.971 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.489 -16.288 -5.980 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.256 3.744 3 O -0.374 6.374 4 C -0.252 4.252 5 C -0.003 4.003 6 C -0.220 4.220 7 C 0.145 3.855 8 F -0.113 7.113 9 C -0.302 4.302 10 C 0.141 3.859 11 O -0.198 6.198 12 C 0.029 3.971 13 H 0.086 0.914 14 C -0.224 4.224 15 C -0.006 4.006 16 C -0.566 4.566 17 H 0.065 0.935 18 C -0.195 4.195 19 N -0.571 5.571 20 Si 0.785 3.215 21 H -0.193 1.193 22 H -0.193 1.193 23 H -0.205 1.205 24 H 0.130 0.870 25 H 0.103 0.897 26 H 0.143 0.857 27 H 0.215 0.785 28 H 0.197 0.803 29 H 0.160 0.840 30 H 0.074 0.926 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.012 0.988 34 H 0.047 0.953 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.109 -15.406 -5.965 21.090 hybrid contribution 0.814 0.363 0.836 1.222 sum -12.294 -15.043 -5.130 20.094 Atomic orbital electron populations 1.22245 0.89404 1.06456 1.06128 1.23075 0.93823 0.86785 0.70719 1.90712 1.73401 1.35751 1.37532 1.20492 0.90233 0.97920 1.16525 1.21614 1.02189 0.87622 0.88865 1.21348 0.90642 1.01533 1.08515 1.17871 0.91201 0.79731 0.96704 1.91511 1.81094 1.45506 1.93177 1.21287 1.01999 0.91360 1.15515 1.19645 0.92218 0.85312 0.88699 1.86437 1.21731 1.27455 1.84202 1.22768 0.76969 1.00188 0.97158 0.91376 1.22312 1.02155 1.02230 0.95661 1.19083 0.95430 0.91214 0.94849 1.21401 1.29364 1.06371 0.99463 0.93550 1.25873 0.95331 0.95390 1.02943 1.70067 1.37036 1.11099 1.38920 0.85472 0.78505 0.78154 0.79410 1.19262 1.19344 1.20460 0.86993 0.89745 0.85729 0.78469 0.80256 0.83984 0.92594 0.89583 0.90930 0.98777 0.95323 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 9.75 71.24 0.69 -2.53 16 2 C 0.38 12.02 7.21 27.88 0.20 12.22 16 3 O -0.50 -22.83 15.90 17.84 0.28 -22.54 16 4 C -0.25 -7.44 5.88 -20.07 -0.12 -7.56 16 5 C 0.01 0.26 9.35 22.56 0.21 0.47 16 6 C -0.20 -3.58 10.00 22.27 0.22 -3.36 16 7 C 0.16 4.11 7.30 22.47 0.16 4.28 16 8 F -0.13 -3.30 17.26 44.97 0.78 -2.52 16 9 C -0.28 -8.89 8.21 22.37 0.18 -8.70 16 10 C 0.19 7.07 6.62 22.90 0.15 7.22 16 11 O -0.29 -13.42 7.62 -68.07 -0.52 -13.94 16 12 C 0.08 3.78 2.17 30.60 0.07 3.85 16 13 H 0.07 2.91 6.31 -2.38 -0.02 2.89 16 14 C -0.17 -5.91 9.17 71.98 0.66 -5.25 16 15 C 0.03 1.74 4.68 29.85 0.14 1.88 16 16 C -0.53 -32.21 8.88 25.60 0.23 -31.99 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 18 C 0.00 0.14 5.46 84.65 0.46 0.60 16 19 N -0.93 -58.87 13.29 21.45 0.28 -58.58 16 20 Si 0.96 47.16 29.54 68.60 2.03 49.18 16 21 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 24 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.12 1.02 6.45 -2.39 -0.02 1.00 16 27 H 0.20 1.33 6.35 -2.91 -0.02 1.31 16 28 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.14 4.48 5.42 -2.91 -0.02 4.47 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.07 2.20 6.91 -2.38 -0.02 2.18 16 33 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -80.77 304.01 7.23 -73.55 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.11 Total: 3.74 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 3.27 Total: -28.88 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.28 Total: -58.58 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.24 Total: -36.49 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -80.77 7.23 -73.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.568 kcal (2) G-P(sol) polarization free energy of solvation -80.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds